LOCUS       XM_006244319            5245 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lysine demethylase 4B (Kdm4b),
            transcript variant X4, mRNA.
ACCESSION   XM_006244319
VERSION     XM_006244319.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244319.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244319.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5245
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5245
                     /gene="Kdm4b"
                     /note="lysine demethylase 4B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 50 ESTs, 1 long SRA read, 13 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 153 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:301128"
                     /db_xref="RGD:1588576"
     CDS             215..3412
                     /gene="Kdm4b"
                     /codon_start=1
                     /product="lysine-specific demethylase 4B isoform X3"
                     /protein_id="XP_006244381.1"
                     /db_xref="GeneID:301128"
                     /db_xref="RGD:1588576"
                     /translation="MGSEDHSAQNPSCKIMTFRPTMDEFRDFNRYVAYIESQGAHRAG
                     LAKIIPPKEWKPRQTYDDIDDVVIPAPIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLA
                     NSEKYCTPRHQDFDDLERKYWKNLTFVSPIYGADISGSLYDDDVAQWNIGNLRSILDM
                     VERECGTIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGK
                     RLERLAIGFFPGSSQGCDAFLRHKMTLISPIILKKYGIPFSRITQEAGEFMITFPYGY
                     HAGFNHGFNCAESTNFATLRWIDYGKVATQCTCRKDMVKISMDVFVRILQPERYEQWK
                     QGRDLTVLDHTRPTALSSPELSSWSASRTSLKAKLLRRSHRRRSQPKKSKPEDSRSPG
                     EATAGVAGLDEARGCSRRETMPEEEEEEELSPSQGHEAEGVEEDGRGKPRPTKARSKK
                     KTPSLLSPPLLSAPPALFPAEEVLRLPPQPKSPGPAMGPMAAEGGPPPTALNVVPPGV
                     PGEETEVRPRPIIPMLYVLPRANSSDGDREHAAHPQLAPMELGPEEEDQAQAGDSQGT
                     TSFSKLKVEIKKSRRHPLGRPPTRSPLSVVKQEASSDEEAFPFSGEDDGSDPEALRSL
                     LSLQWKSKAASFQAERKLNAAAALSEPYCAVCTLFYPYSQSVQTEREVLATPGDSAVQ
                     PPSKSGQRTRPLIPEMCFTSSGENTEPLPANSYVGEDGTSPLISCAHCCLQVHASCYG
                     VRPELAKEGWTCSRCAAHAWTAECCLCNLRGGALQRTTEHRWIHVICAIAVPEVRFLN
                     VIERNPVDVSAIPEQRWKLKCVYCRKRMKRVSGACIQCSYEHCSTSFHVTCAHAAGVL
                     MEPDDWPYVVSITCLKHRASGAGGQLLRTVSLGQIVITKNRNGLYYRCRVIGTTAQTF
                     YEVNFDDGSYSDNLYPESITSRDCLRLGPPPEGELVELRWTDGNLYRARFISMATSLI
                     YQVEFEDGSQLTVKRADIFTLEEELPKRVRSRLSLSTGTPQEPSFSGDGVKAAKRPRV
                     ATVLATTTEDTGRSPEYLAFMESLLQAQGQPGAPF"
ORIGIN      
        1 ccgccccaag cgcttgctga gggctcggcc gcgagcgaga gaaccaacgg aggagcgtag
       61 agaccaggcg aagataggag ctgagtggcc cgggcgggca agcgagcgag ggccggcagt
      121 ggcgacgcga gacggctggg cacgcgcagc tcaacctgct gtccacgctc cgggccgcgc
      181 gttgcgccag gtgtagctcc actttgctgc aacgatgggg tctgaggacc acagtgccca
      241 gaatcccagc tgcaaaatca tgaccttccg ccccaccatg gatgaattca gggacttcaa
      301 cagatatgtg gcctacattg agtcgcaggg tgcccaccgt gccggcctgg ccaagatcat
      361 cccacccaag gagtggaagc cacggcagac atatgatgac attgatgacg tggtcatccc
      421 agcacctatc caacaggtgg tgacaggcca gtcggggctt ttcacacagt acaacatcca
      481 gaagaaggcc atgactgtgg gggagtaccg ccgcctagcc aacagtgaga agtactgtac
      541 cccacgccat caggacttcg atgacctgga acgcaagtac tggaagaacc tgacctttgt
      601 ctcacccatc tatggggctg acatcagtgg ctccctgtat gatgatgacg tggcccagtg
      661 gaacatcggc aatctgaggt ccatcctaga catggtggag cgcgaatgcg ggaccatcat
      721 tgagggtgtg aacacaccct acttgtactt tggcatgtgg aaaaccacgt ttgcctggca
      781 cacagaggac atggacctct acagcatcaa ctacctgcac tttggcgagc ccaagtcctg
      841 gtacgccata ccaccagagc acggcaagcg cctggagcgc ctggccatag gcttcttccc
      901 tgggagctca cagggctgcg atgccttcct aaggcacaag atgacgctca tctcgcccat
      961 catcctgaag aagtatggca tccccttcag ccggattaca caggaagctg gggagttcat
     1021 gatcacattc ccctatggtt accatgcggg cttcaaccat ggctttaact gcgctgagtc
     1081 cactaacttt gccacgctgc gctggatcga ctatggcaaa gtggccacac agtgtacatg
     1141 tcgaaaggac atggtcaaga tctccatgga tgtgtttgta cgcatactgc agcccgaacg
     1201 ctatgagcag tggaagcaag ggcgtgacct cacagtgctg gaccacacga ggcccacagc
     1261 cctgagcagt cccgagctca gctcttggag tgcctcacga acttcactca aggccaagct
     1321 cctgcgaagg tcacaccgga gacggagcca gcccaagaag tccaaacctg aagactccag
     1381 gtctccaggg gaagccacag ctggggtagc tggtctggac gaggccaggg gctgttcccg
     1441 gagggagacc atgcctgagg aggaggagga agaggagctg tcaccttcac agggccatga
     1501 ggccgagggc gtggaagagg atggcagagg caagcctcgg ccaactaagg ccaggagcaa
     1561 gaagaagact cccagcctac tgtcaccccc attgctgtct gccccaccag ccctattccc
     1621 cgccgaggag gtcctgaggc ttccacccca acctaagtct ccagggccag ccatgggccc
     1681 catggctgca gaggggggtc ctccaccaac agccctcaat gtcgtgcctc ctggggtgcc
     1741 aggtgaggaa acagaggtgc ggccccggcc cattatccca atgctgtacg tgttgccccg
     1801 tgccaacagc tctgatgggg acagggagca tgctgcccat ccacagttgg cacccatgga
     1861 gctggggcca gaagaggaag accaggccca ggctggtgac tcacagggaa caacctcctt
     1921 ctctaagctg aaggtggaga tcaaaaagag tcggcgtcac cccttgggtc ggccacccac
     1981 acggtccccg ctatctgtgg tcaagcagga ggcctcaagt gatgaagagg ccttcccatt
     2041 ctcaggagag gatgatggca gtgaccctga ggccttgagg tccctgctgt ccctgcagtg
     2101 gaagagcaag gcagccagct tccaagctga gaggaagctg aatgcggcag ccgccctcag
     2161 cgagccctac tgtgccgtct gtaccctctt ctacccctac agccagtcag tacagacaga
     2221 gcgggaggtc ctggccactc caggggacag tgctgtccag ccgccctcca aaagtggcca
     2281 gaggacacgg ccactgatcc ctgagatgtg cttcacttca agtggggaga acacagaacc
     2341 gctgcctgcc aactcctacg tcggtgagga cggcaccagt ccactcatct cctgtgccca
     2401 ctgctgtctg caggtccatg ccagttgcta tggtgtccgg cctgagctgg ccaaagaggg
     2461 ctggacatgt tcccggtgtg cggcccacgc ctggactgcg gaatgctgtt tgtgcaacct
     2521 tcggggagga gcactacaga ggaccacaga gcacaggtgg attcatgtga tctgcgccat
     2581 tgcagtcccc gaggtacgat tcctcaatgt gatcgaacgc aacccagtgg acgtcagtgc
     2641 catccctgag cagcgatgga aactgaaatg tgtgtactgc cgcaagcgta tgaagagggt
     2701 gtcgggtgcc tgcatccagt gctcctacga gcactgctcc acgtccttcc atgtgacctg
     2761 cgcacatgct gctggcgtcc tcatggagcc agatgactgg ccctatgtag tgtccatcac
     2821 ctgcctcaag cacagggcca gtggagcagg gggccagctg ttgcgcacgg tgtccctggg
     2881 ccagatcgtc atcaccaaga atcgcaatgg gctctactac cgctgccgtg tcattggcac
     2941 cactgctcag acattctatg aggtcaactt cgatgatggc tcctacagcg acaacctgta
     3001 tccagagagc atcacaagca gagactgtct gcggctaggg ccgcctcctg agggcgagct
     3061 ggtggagctg cggtggacag acggtaatct gtacagagcc aggttcatct ccatggccac
     3121 cagcctcatc taccaggtag agtttgagga tggatctcag ctgactgtga agcgtgcgga
     3181 catcttcaca cttgaagagg aattgcccaa gagggtacgg tcccggctgt cactgagcac
     3241 cggcacacca caggagccca gcttctccgg agatggcgtg aaggccgcca agcgcccacg
     3301 ggtggccacc gtgctggcca ccaccactga ggacacaggg cgcagcccag aatacctggc
     3361 cttcatggag agcctgctgc aggcgcaggg ccagcctgga gcacccttct agatactgcc
     3421 cactcctgtc ccactgtagg taactgggta acaggacccg caggatccaa cttggccaga
     3481 ctcagggagc gagaccggca tccctggact acagtgactc cacgggacct ggcctggctc
     3541 tgctcttctc ctaaaggtgc taaggggcgt cccagagtct cctgtgacag atgctagcca
     3601 aggacactgg ggcacagccc caacctgttt tctagatttg tggctttaaa aattgacaac
     3661 aggcacattc tttttcctct ccaccaagat gcgaggagat aaaagtttca tctgtgtttg
     3721 acacctgagg atgtttgtct actgagcagg tgggaaggca cttttgtaca ggtgttccct
     3781 ggagggggca gcagcccagt gtgcagtgac ttgtgtgatg gccgcttgag atgctccctg
     3841 cttcctgctc ggggaggtgg gccctgcagg agtgggccct gccctgcctc ctccatgccc
     3901 tgccctgtgc agagtatgcc tcactctgcc tttgctgcct gggctcccat gagccttcac
     3961 ctttggacta gggcctctgt gtggctgagg gcaggagaaa gcagattcca ccttcacttg
     4021 aagccctgat cgagtgacac agggcacaga cttcacaggc cctgtccgca ctagccgcca
     4081 ctacccatgg gttggctata ggttctgtct ctttagaagc cactgccgcc atagggcctc
     4141 aggccccagg agagacagct gaccttaaat gacaaaggac tggacagagg gacctggccc
     4201 tgcggacctg ctggggactt agggactggg cctctgctga gtgcccaatg gctgccatgc
     4261 ccatgtgtac attgaaattc tatttatatt gtaaagagaa taaaaaagga cccaacctgg
     4321 gcctggaagg agaggccaaa ccgcaggagt ctcaggctgt gccccttgtg ggctctgcag
     4381 tggctgcagg tggccctgct tgtgccccca ccccccaccc tccagagagg ccctgatttt
     4441 tgtgcaaaaa caaaagctca ctccccgcca gatgaaggac tccatatttt tgcctcattc
     4501 tctggcctct ggttcagtat caattaaagc ccttgagctg agcgcttcct attcccacct
     4561 ggtcatggct gtgttgtcat tttgtgccag gacaagatgg gctcaggatg gaggtgtcct
     4621 tggcaggcat aatgggtaca gtgtgtcctg gtctgggcgt aggggtcgcc aggaggtggg
     4681 acgccatcct caggacatct agtatctcca cagtgacgtg gagctgaggc cgtgtgtccc
     4741 tcgtgtccct cctgaatgtc tgtgctctct ctgactctcc tgcctgctcc tacactgtgg
     4801 ggccacagag gagcaaaggc cctgggattg ggcagaccat ggcctggtga agcagaggga
     4861 ggagtggagg aagggtggcc tccaaagggt agacttggat ttgacttgga gggaggagga
     4921 ggagggtaga agctgccaaa ggctctggac agaagagggg gagcctccct ggtgctttca
     4981 gcaagagctc agcagcagac agccccggtg ccgcaggggc cttggtttct ctttgaaact
     5041 gtcccatatg actctaggaa ggaaagggaa ggtggccctg ccagtgatag ggcctgggcc
     5101 ctgtgggagt gaagcgatgt cctaggaggg gacatctaac tagctgtcac ctcgcctggt
     5161 acatcgggcc aagctcacat gtacagcccc cagtcctggg ccaaatctag ccctggacct
     5221 gtttgttaat aaagttttcc ttgca
//
