LOCUS       XM_039089477            4828 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lysine demethylase 2B (Kdm2b),
            transcript variant X10, mRNA.
ACCESSION   XM_039089477
VERSION     XM_039089477.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4828
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4828
                     /gene="Kdm2b"
                     /gene_synonym="Fbxl10"
                     /note="lysine demethylase 2B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 21 ESTs, 2 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:304495"
                     /db_xref="RGD:1310217"
     CDS             16..3723
                     /gene="Kdm2b"
                     /gene_synonym="Fbxl10"
                     /codon_start=1
                     /product="lysine-specific demethylase 2B isoform X9"
                     /protein_id="XP_038945405.1"
                     /db_xref="GeneID:304495"
                     /db_xref="RGD:1310217"
                     /translation="MQKEASSLLLQSLRAIDRQRYDENEDLSDVEEIVSVRGFSLEEK
                     LRSQLYQGDFVHAMEGKDFNYEYVQREALRVPLVFRDKDGLGIKMPDPDFTVRDVKLL
                     VGSRRLVDVMDVNTQKGTEMSMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKR
                     PTVVDLVDWVDNMWPQHLKEKQTEATNALAEMKYPKVKKYCLMSVKGCFTDFHIDFGG
                     TSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYT
                     FFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMC
                     WYVLERYVYCVTQRSYLTQEYQRELMLIDAPRKNSVDGFSSDSWLEMEEESREQQLQE
                     EEDKEEEGDGADKTPKPPTEGPTSPTSTQSEDQDSTGKKPKAPAMRFLKRTLSNESEE
                     SVKSTAMPVDYPKTPTGSPATEVSTKWTHLTEFELKGLKALVEKLESLPENKKCVPEG
                     IEDPQALLEGVKNVLKEHVDDDPNLAITGVPVVSWPKKTPKPVLPHTAVCLVCGEAGK
                     EDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKT
                     GKAYKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPK
                     KVPTDGILRRKSDDVHLRRKRKYEKPQELSARKRASTLQTSPGSSSHLSPRPPLGSSL
                     SPWWRSSLTYFQQQLKPGKEDKLLRKKRRSWKNAEDRLSLANKPLRRFKQEPEDDLPE
                     APPKTRESDQSRSSSPTAGPSTEGAEGPEEKRKVKMRRKRRLPNKELSKELSKELNHE
                     IQKTESTLAHENHQPIKSEPESENEEPKRPLSHCERPHRFSKGLNGTPRELRHSLGPG
                     LRSPPRVISRPPPSTSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMHREVWMAV
                     FSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLMLSGIIRRQPVSLDL
                     SWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDA
                     QMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDVSLRLIIRHMPLLSKLHLSY
                     CNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICHIDLRYCKQ
                     VTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS"
ORIGIN      
        1 aaaaaaataa attgcatgca aaaggaagcg agcagcttac tcctccagtc tcttcgtgcg
       61 attgaccgcc agagatacga cgagaacgaa gacttgtcgg acgtggagga aattgtcagc
      121 gtccgtggct tcagcctgga ggagaagcta cgtagccagc tataccaggg ggacttcgtg
      181 catgccatgg aaggcaaaga ttttaactat gagtacgtac agagagaagc tctcagggtt
      241 cccctggttt ttcgagacaa ggatggacta ggaatcaaga tgccagaccc tgacttcaca
      301 gtccgagacg tcaaactcct ggtggggagt cgccggctgg tggacgtgat ggacgtgaac
      361 acccagaagg gcacggagat gagcatgtcc cagttcgtgc gttactacga gacaccagag
      421 gcacagaggg acaaactgta caatgtcatc agcctcgagt tcagccatac gaagctggag
      481 catctagtca agcgtcccac tgtggtggac ctggtcgact gggtggacaa catgtggccc
      541 caacatctaa aggaaaagca gacagaagcc acaaacgccc ttgccgagat gaaatacccc
      601 aaagtgaaga agtactgtct gatgagcgtg aagggctgtt tcaccgactt ccacattgac
      661 tttggaggca cctccgtgtg gtaccatgtt ttccgtggcg ggaagatctt ttggctgatc
      721 cccccaaccc tgcacaactt ggctctgtat gaggagtggg tgctgtctgg caaacagagt
      781 gacatctttc tgggagaccg agtggaacgc tgccaaagaa ttgagctgaa gcaaggctac
      841 acatttttca tcccttctgg ttggatccat gcagtgtaca cgcccgtgga ctctctggtg
      901 ttcggcggga acatcctgca cagcttcaac gtgcccatgc agctgcgcat ctacgagatc
      961 gaggacagga cccgggttca gcccaagttc cgttacccct tctactatga gatgtgctgg
     1021 tatgtcttgg agagatacgt gtactgtgtg acccagcgct cctacctcac tcaggaatac
     1081 cagcgagaat taatgctcat tgatgcccca agaaaaaaca gtgtagacgg tttctcatct
     1141 gattcctggc tggagatgga ggaggagtcc cgtgagcagc agctccagga ggaggaggac
     1201 aaggaagagg aaggggatgg tgcagacaaa acacccaagc cacccaccga gggccccacc
     1261 tcacccacca gcacccagtc ggaagaccag gacagcacag ggaagaagcc taaagcccct
     1321 gctatgcgat tcctcaagag gactttgtcc aatgagtccg aggaaagtgt caagtccaca
     1381 gcgatgcccg tagactaccc caagacgccc acaggctccc cggccactga ggtttctacc
     1441 aagtggactc accttaccga atttgaactg aagggcttga aagccctggt tgaaaaacta
     1501 gagtctcttc cggagaataa gaagtgtgtc cctgagggaa ttgaggaccc ccaggccctc
     1561 ctggaaggtg ttaagaatgt actgaaggaa cacgtggatg atgaccccaa cctggccatc
     1621 accggggtcc ccgtggtcag ttggccaaag aaaactccaa agccagtgct gccccacacc
     1681 gccgtgtgcc ttgtgtgtgg cgaggcaggg aaggaggaca cagtggaaga ggaagaaggc
     1741 aagtttaacc tcatgctcat ggagtgctcc atctgcaacg agatcatcca ccctggatgc
     1801 cttaagatta aggaatcaga gggtgtggtc aacgatgagc ttcccaactg ctgggagtgt
     1861 ccgaagtgta accatgccgg caagaccggg aaagcctaca agcaaaagcg tggccctggc
     1921 tttaagtatg cctccaactt gcctggctcc ttgctcaagg agcagaagat gaaccgggac
     1981 aacaaggaag ggcaggagcc tgccaagcgg aggagtgagt gtgaagaggc cccccgtcgc
     2041 aggtcagacg agcaccccaa gaaggtgcct acagatggca tcctccgccg aaagtctgac
     2101 gatgtgcacc tgaggaggaa gcggaaatac gagaagcccc aagagctgag tgcacgcaag
     2161 cgagcctcga cgcttcaaac gtcccccggt tcctcctctc acctctcgcc gaggccccct
     2221 ctaggcagca gtctcagccc ttggtggaga tccagtctca cttacttcca gcagcagcta
     2281 aaacctggca aagaagataa gcttctcagg aaaaagcggc ggtcctggaa gaacgctgag
     2341 gatcggctgt cactggccaa caagcccctt cggcgcttca agcaggagcc agaggacgac
     2401 ctgcctgagg cacctcctaa gacccgggag agtgatcagt cacggtccag ctcgcccaca
     2461 gctgggccca gcactgaggg ggccgagggc ccagaagaga agaggaaggt gaagatgcgc
     2521 cggaaacggc ggcttcccaa caaggagttg agcaaagagc taagcaagga gctcaaccac
     2581 gagatccaaa agacagagag caccttagcc cacgagaacc accagcctat caagtcagag
     2641 cccgagagtg aaaacgagga gccaaagagg cccttaagcc actgcgagcg cccgcaccgc
     2701 ttcagcaaag ggctcaacgg cactcctcgg gagctgcggc actcactggg acctgggctt
     2761 cgcagcccac ctcgtgtcat ctcccggccc ccgccctcta catccccacc caagtgcatc
     2821 cagatggagc gtcacgtgat ccggccacca cccatcagcc ccccacctga ctcgctgccc
     2881 ctggatgatg gagcagccca tgtcatgcat agggaggtgt ggatggcagt cttcagctac
     2941 ctcagccacc aagacctgtg tgtctgcatg cgggtctgca ggacctggaa ccgctggtgc
     3001 tgcgataagc ggttgtggac ccgcatcgac ctgaaccact gcaagtccat cactcccctg
     3061 atgctgagcg gcatcatccg gcggcagccg gtctccctgg atctcagctg gaccaacatc
     3121 tccaagaagc agctgagctg gctcatcaac cggttgcctg ggctccgaga cttggtgctg
     3181 tcaggctgct catggatcgc tgtctcagcc ctctgtagct ccagttgtcc actgctccgg
     3241 accctggatg tccagtgggt agaaggacta aaggatgccc agatgcggga tctcctgtct
     3301 ccacccacag acaacaggcc aggtcaaatg gacaatcgga gcaagctccg gaacattgtg
     3361 gaactgcgcc tagctggcct ggacatcaca gatgtctccc tgcggctcat tattcgccat
     3421 atgcccctgc tctccaagct ccacctcagt tactgtaacc acgtcactga tcagtccatc
     3481 aacctgctca ctgcggtcgg caccaccacc cgggactctc tgacagagat caacctatcg
     3541 gactgcaata aggtcactga ccagtgcctg tccttcttca aacgctgtgg aaatatctgt
     3601 catattgacc tgaggtactg caagcaagtc accaaggaag gctgtgagca gttcatagct
     3661 gaaatgtctg tgagtgtcca gtttgggcaa gtggaagaga aactcctgca aaaactaagt
     3721 tagctccagg acaaggatgt aaatatgggg gtttggggga atacagccag ggagagggaa
     3781 gactgcagag acaagtgggc ctgtatttcc ctttggaatc tgaaacgaga ctacaggaca
     3841 cagttctgtt ttgcaagtct tgccaaggga gaagccgttc aaccacccat ttggggatga
     3901 gtgagccaga tgttttcctt tgctctttct acatcgtaac tgcactgctt ctggaccatt
     3961 tctaaggcgg cctttagaag acattccaat tgcaaaggaa gatgagcttc agagaaatcc
     4021 tcttagaagc ctgagtttag tgtttttatc agcagcttct gtttgggaca ccttgttcct
     4081 tgcaatgctg aggcttctgg tgtcaacatg gagtggacca caaacaccac ctgcagccat
     4141 cttgacacat tttgtttagt tggttttgtt acaccttaca ttatgcagaa ctatttttgt
     4201 ataaattgtt taaaaattat ttatgcaaga tttgaatgca taccagtgtt tttattattt
     4261 agattgccaa ctgtccttca ggtaggagag aacttaacct gtattttgtc aacataaaaa
     4321 gcccatctcc agatgtgccc aggtgtgacg ggggctatga ccttccactt aaaaaagcat
     4381 gtttaactgg atgctgagag cctactctgt atgtcaagaa gttacaagca tgttgtggat
     4441 gtgtgtaaag tatagtccag gtaaagacac tttgccaagt ttcaatagaa ttcacctttt
     4501 cctcaaagtt ttacaatgca gacttcggcc tttacactca ggagggtttt gctccaagca
     4561 tgagctcttg tattctattt acatagatct aatttatacc atgagtcagg tagagtaaat
     4621 gtgcccatag cctttcctct gtcccctcct ttcaagtgtt cagttctcac ttaagttggt
     4681 aagctggcta ttttctagtt gtcaagttct gcaaccctgt gtgccattgt tgtttggtgg
     4741 tatcctaacc tttccctgat gaggttttac ctttgttgga tttgtataaa cagttgtacc
     4801 aaaaaaaaaa aaaaaaaaaa aaaaaaat
//
