LOCUS       NM_001108871            3106 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus potassium channel tetramerization domain
            containing 9 (Kctd9), mRNA.
ACCESSION   NM_001108871 XM_001068535 XM_344426
VERSION     NM_001108871.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3106)
  AUTHORS   Ji AX, Chu A, Nielsen TK, Benlekbir S, Rubinstein JL and Prive GG.
  TITLE     Structural Insights into KCTD Protein Assembly and Cullin3
            Recognition
  JOURNAL   J Mol Biol 428 (1), 92-107 (2016)
   PUBMED   26334369
REFERENCE   2  (bases 1 to 3106)
  AUTHORS   Yu H, Tardivo L, Tam S, Weiner E, Gebreab F, Fan C, Svrzikapa N,
            Hirozane-Kishikawa T, Rietman E, Yang X, Sahalie J, Salehi-Ashtiani
            K, Hao T, Cusick ME, Hill DE, Roth FP, Braun P and Vidal M.
  TITLE     Next-generation sequencing to generate interactome datasets
  JOURNAL   Nat Methods 8 (6), 478-480 (2011)
   PUBMED   21516116
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474023.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001068535.1, XM_344426.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3106
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p12"
     gene            1..3106
                     /gene="Kctd9"
                     /note="potassium channel tetramerization domain containing
                     9"
                     /db_xref="GeneID:364410"
                     /db_xref="RGD:1312010"
     exon            1..123
                     /gene="Kctd9"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..1245
                     /gene="Kctd9"
                     /note="potassium channel tetramerisation domain containing
                     9"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein KCTD9"
                     /protein_id="NP_001102341.1"
                     /db_xref="GeneID:364410"
                     /db_xref="RGD:1312010"
                     /translation="MRRVTLFLNGSPRNGKVVAVYGTLSDLLSVASSKLGIKATSVYN
                     GKGGLIDDIALIRDDDVLFVCEGEPFIDPQTDARPPGGLLGSHTDWLTLNVGGRYFTT
                     TRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVN
                     DGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSEL
                     RCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQ
                     GVKMLCSNAEGASLRLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAK
                     LKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR"
     exon            124..245
                     /gene="Kctd9"
                     /inference="alignment:Splign:2.1.0"
     exon            246..289
                     /gene="Kctd9"
                     /inference="alignment:Splign:2.1.0"
     exon            290..386
                     /gene="Kctd9"
                     /inference="alignment:Splign:2.1.0"
     exon            387..445
                     /gene="Kctd9"
                     /inference="alignment:Splign:2.1.0"
     exon            446..574
                     /gene="Kctd9"
                     /inference="alignment:Splign:2.1.0"
     exon            575..642
                     /gene="Kctd9"
                     /inference="alignment:Splign:2.1.0"
     exon            643..738
                     /gene="Kctd9"
                     /inference="alignment:Splign:2.1.0"
     exon            739..888
                     /gene="Kctd9"
                     /inference="alignment:Splign:2.1.0"
     exon            889..994
                     /gene="Kctd9"
                     /inference="alignment:Splign:2.1.0"
     exon            995..1128
                     /gene="Kctd9"
                     /inference="alignment:Splign:2.1.0"
     exon            1129..3106
                     /gene="Kctd9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgggcgcgga gcgcggcggg tggcgggccg ggagagaggg tggcggctcc ctcaggaccc
       61 ggcgcgggcg gagcgatgcg gcgggtcacg ctgttcttga acggcagccc gaggaacggc
      121 aaggtggttg ctgtatacgg aactttgtct gatttgctct cagtagccag cagtaaactc
      181 ggcataaaag ccaccagtgt atataatggg aaaggcggac tgattgatga tattgctttg
      241 atcagggatg atgatgtgtt gtttgtgtgt gaaggagaac catttattga tcctcagaca
      301 gatgccagac cgcctggagg attgctagga tctcacacag actggcttac attgaatgta
      361 ggagggcgat actttacaac aacaaggagc actttagtga ataaagagcc tgacagtatg
      421 ctggcgcaca tgttcaagga caaaggtgtc tggggaaata agcaagatca tagaggagct
      481 ttcttaattg accgaagtcc tgagtacttt gaacctattt tgaactattt acgtcatgga
      541 cagctcattg taaatgatgg cattaactta ttgggtgttc tagaagaagc caggtttttt
      601 ggtattgact cactgattga acacctagaa gtggccataa agaattccca accaccagag
      661 gatcattcac caatatcccg aaaggaattt gttcgatttc tgctggccac tccaaccaag
      721 tcagagctgc gctgccaggg tttaaacttc agtggtgctg atctttcccg tttggacctt
      781 cgatacatta acttcaaaat ggccaattta agccgctgca acctcgcaca tgcaaatctc
      841 tgctgtgcta atcttgaacg agctgatctt tctggatcag tgctcgactg tgcaaatctc
      901 cagggagtca agatgctctg ctcaaacgca gaaggtgcat ccctgaggct ctgtaatttt
      961 gaggatcctt caggtcttaa agccaactta gagggtgcta atctgaaagg tgtggacatg
     1021 gaaggaagcc agatgacagg gattaacctc agagttgcta ccttaaaaaa tgcgaaactg
     1081 aagaactgta atctcagagg agcaactctg gcaggaacag atttagaaaa ctgtgatttg
     1141 tcggggtgtg acctccagga agccaacttg agaggctcca acgtgaaggg tgccatattt
     1201 gaagagatgc tgacaccatt acatatgtct cagagtgtca gatgagagtg gcaagagctg
     1261 gaggaagatg tcccagatga aaacgtttcc ttattttata tctcccatct atcaagttgt
     1321 ctagtggaga gaaaactgta agggaattta aggcatatgt ttgttcccag aggtgcataa
     1381 ggggaagtaa ttgcatttcc ctcattgtga ctgtaacaga agaacactct gttcatagat
     1441 gtagggaaag tagaccatgc tgctgcattt tgagtggagt tggggcgttt gtctggtttc
     1501 tgaccaggag tagtagctat tctatttgct tttatttagg cattgtatgg aagaaccatc
     1561 ttggtttaag atgcattgag agttttaatt tatgaaaagc acaacatatg caaatatatt
     1621 tattgaatac ctagatgcag taaggatgtt taagttgtta aacgtcttga agactctgac
     1681 gagttgttcg ggtttataaa tagctttagt aatgccttcc tcttcaaaca cctatccatc
     1741 ctgtgagggt gattagttta agactccctt ggctcttttg aaattcattt ctgtaatgtt
     1801 tacttttaaa gaagaaaaca gcaaactttg agtcatagtc tgttctcaca ttttgagaca
     1861 cagttggagg aaagctcgtg tgtatcattc tgcaggagaa ggaaggattc ccagtcgctg
     1921 cagtggtcta gtgagcacgc gtcagcttca ctataggcaa attccattgt gcagcagact
     1981 aggctaccct gtcccgtcac tagttagttc tcatgctcag ttgtcacaag cataggaaga
     2041 tacttcagaa ccaaacacag ctttatcctg accacagttc gtgtatgcca gttagtttat
     2101 acagaaccag cttagaatag atattcaact aaatctactg catttggagc tagacagtat
     2161 ggataaatcc tgcagtcacc tacaagaacg caacatcaga taactatagc taaaacccta
     2221 tggtggggac taagaaattc tgaactgatg gcttgattat agccaccaaa acagctgatg
     2281 aacacaaatt aagtgtttgg ccagcacatg ctgtactgtg tcagtacctg tggctctttt
     2341 tttttttaaa tattttctga tgtttgtctt gtttttaagt gaaattttgg tccagttttc
     2401 ttgagtcatt attatctgtg aacacagcag tagggtcttt accttcctag tggatgtccc
     2461 agtgtcctta tgtgtttccc aagagcaggg aagaagctgt gtccaaatgg gttctcaatc
     2521 ctacaggctg gtcagcttga ggcaatgaat ccttacagat gaccttgtct ccttcaggag
     2581 agtggcttgt cttcattact ctgtagctta ttcttatatc tacatatgca aagctttcct
     2641 tcacagtaaa gggcttacac ggggaggaga gcgccccttt acagggaaag gaaagcaatt
     2701 ttgaaaatga attattttct ttgtgttatt atttttacca agacagagaa gtattgtatt
     2761 gagagatacc tattttcata atcaatgtgt gcctaaatta tatttaactc atttcactgc
     2821 actctatttt caataattat agcctgtatg cattcactga atggtcctct gcagacagag
     2881 gagctgagag atgcaaacaa agtgtgcttg ggaactgcgg ggttcagctc tgatgtaaac
     2941 cgcattaata aatggtgtgg accgctgacc ggctgtttcg gctcttgctt ttataagtca
     3001 gcagtttctg catttcccac agttttccat gatggtgcca tgcaggagtg ggccgcacgg
     3061 tgctcttaat gaattagttt tgttgaaaaa gtcattaaag caaatt
//
