LOCUS       NM_001399471            4340 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus potassium channel tetramerization domain
            containing 20 (Kctd20), transcript variant 2, mRNA.
ACCESSION   NM_001399471 XM_006256148
VERSION     NM_001399471.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4340)
  AUTHORS   Nawa,M. and Matsuoka,M.
  TITLE     KCTD20, a relative of BTBD10, is a positive regulator of Akt
  JOURNAL   BMC Biochem 14, 27 (2013)
   PUBMED   24156551
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4340)
  AUTHORS   Suzuki,H., Fukunishi,Y., Kagawa,I., Saito,R., Oda,H., Endo,T.,
            Kondo,S., Bono,H., Okazaki,Y. and Hayashizaki,Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Jan 9, 2022 this sequence version replaced XM_006256148.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.57210.1,
                                           SRR26360194.2351738.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-139               JAXUCZ010000020.1  7017695-7017833
            140-318             JAXUCZ010000020.1  7023023-7023201
            319-589             JAXUCZ010000020.1  7026107-7026377
            590-692             JAXUCZ010000020.1  7027568-7027670
            693-813             JAXUCZ010000020.1  7028023-7028143
            814-1011            JAXUCZ010000020.1  7028776-7028973
            1012-1122           JAXUCZ010000020.1  7029762-7029872
            1123-4340           JAXUCZ010000020.1  7031223-7034440
FEATURES             Location/Qualifiers
     source          1..4340
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..4340
                     /gene="Kctd20"
                     /gene_synonym="RGD1309887"
                     /note="potassium channel tetramerization domain containing
                     20"
                     /db_xref="GeneID:294307"
                     /db_xref="RGD:1309887"
     exon            1..139
                     /gene="Kctd20"
                     /gene_synonym="RGD1309887"
                     /inference="alignment:Splign:2.1.0"
     exon            140..318
                     /gene="Kctd20"
                     /gene_synonym="RGD1309887"
                     /inference="alignment:Splign:2.1.0"
     CDS             159..1415
                     /gene="Kctd20"
                     /gene_synonym="RGD1309887"
                     /note="potassium channel tetramerisation domain containing
                     20"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein KCTD20"
                     /protein_id="NP_001386400.1"
                     /db_xref="GeneID:294307"
                     /db_xref="RGD:1309887"
                     /translation="MNVHQGSDGDWLLQPELSFLGDETLAATQEKESSSLVSSGLPSL
                     TYPLAARNEDFALDSAPQPAASLQHPHIMPLPEDNKGSCFQSGSRRSREPFLVPERSG
                     SGGLGFGGSSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEK
                     GEYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDL
                     SALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPP
                     PMGEEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRP
                     GGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEIMM
                     HHPPQVDELDRLNAPLAQMAPNDFQD"
     exon            319..589
                     /gene="Kctd20"
                     /gene_synonym="RGD1309887"
                     /inference="alignment:Splign:2.1.0"
     exon            590..692
                     /gene="Kctd20"
                     /gene_synonym="RGD1309887"
                     /inference="alignment:Splign:2.1.0"
     exon            693..813
                     /gene="Kctd20"
                     /gene_synonym="RGD1309887"
                     /inference="alignment:Splign:2.1.0"
     exon            814..1011
                     /gene="Kctd20"
                     /gene_synonym="RGD1309887"
                     /inference="alignment:Splign:2.1.0"
     exon            1012..1122
                     /gene="Kctd20"
                     /gene_synonym="RGD1309887"
                     /inference="alignment:Splign:2.1.0"
     exon            1123..4340
                     /gene="Kctd20"
                     /gene_synonym="RGD1309887"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggctgatga tggcggcggg cgcgacgcgg cggcctgaga ggccctgcgc agggtcctcc
       61 cgggccagag gagaaaggag aagctcggcg agcgggccaa ccgacctcgc ggggccaccg
      121 gtaaccaagc ctggggaagg cttcctttct gactaagaat gaatgttcac cagggcagtg
      181 atggcgactg gttattgcag ccagagctca gcttcctagg agatgagacc ttagctgcca
      241 ctcaagagaa agaaagcagc agcttggtgt cctctggtct tcctagtctc acttatcccc
      301 tagctgccag gaatgaagac tttgcacttg actcagcccc tcagccagcc gcaagccttc
      361 agcatcctca cataatgcca cttcctgaag acaacaaggg ctcctgcttc cagagtggga
      421 gcaggcggag ccgagagccc ttccttgttc cagagaggtc tggaagtggt ggcttaggct
      481 ttggaggtag ctctcaggcc ccagagaaag tgacacttct tgtggacggc acccgttttg
      541 tggtaaatcc tcaaattttc actgctcatc cggataccat gttgggaagg atgtttgggc
      601 caggaagaga atacaacttc acacggccca atgaaaaggg agagtacgag atcgcagaag
      661 ggatcagcgc cactgtgttc cgcacagttc tggattatta caaaactggc atcatcaact
      721 gtccagatgg catctccatc ccagatctca gggacacctg cgactatctc tgcattaact
      781 ttgacttcaa cactatccgg tgtcaggatc tgagtgctct actgcacgag ctgtccaacg
      841 atggtgccca caagcagttt gaccactacc tcgaggaact gattctgccc atcatggtgg
      901 gctgtgccaa gaaaggcgag cgagagtgtc acatcgttgt gctgacagac gaggactccg
      961 tggactggga tgaagaccac cccccaccca tgggggaaga gtattcccaa attctttaca
     1021 gctccaagct ctacagattc ttcaaataca tcgagaatcg agatgttgct aaaactgtgc
     1081 tgaaagagcg aggcctgaag aacattcgaa ttggaattga aggttacccg acctgtaaag
     1141 aaaagatcaa gaggaggcct ggtgggcggt ctgaagttat ctacaattat gtgcagcgcc
     1201 cttttatcca gatgtcctgg gaaaaggagg aaggaaagag tcgccatgtg gatttccagt
     1261 gtgtccgcag caaatccctc actaatctgg tggccgctgg agaggacgtc ttggaagacc
     1321 aggagataat gatgcatcac ccgcctcagg tggacgagct cgaccggcta aacgcgccgc
     1381 ttgctcagat ggctccgaat gactttcaag attaggaaca gacggcatct gcccattgct
     1441 ggagctctct ctgtgggtac ccccagccag gcctccctgc cctctggttt ctcaccctta
     1501 ggagatgctt cctcctgtct ccttcccccc gagtcatgac tgtgcccttt tctgggcccg
     1561 cctctgactg ggtgaagaag ctctctggaa atcaggcagt cggctttacc agccctggca
     1621 aagaaaccgt ttgggtctgg tgctccgttg aatctctgca caactgaggg agaggacgtg
     1681 ggcggggcct cacatctgca cagcagccta ctctccatct gtgggtggct tcgcatcaga
     1741 tagagctctc aatagcaaag gaccaaacgt cagaggagac agccggggtg gtgtgcccac
     1801 ctgtgtgggc tgtgtaccag ggtgggtgaa aggcggtgcc tgggcactgc acccagatgc
     1861 catctggata gaatgtgtga aaggaattcc caagagcatc agctcagtgc tgcttttcac
     1921 taacacagga gcaaactgac ccacaagaca gggtctacgg ctggaagagc agtgacccag
     1981 ggctgtgcct gtgcagcctg atgcttcatt tggaagtgaa acttgcaaat gaggtgacag
     2041 aatggctcca gattgggcca gccggaccct cttctggcag gaagccaagt acctgtcccc
     2101 agagacagcg cgtgactgtg ggtgtggtag gagactgata ccttgaggat ttgcttgcca
     2161 tcctttgagc tccagggggg agggcatctg gtgagctggg caggtgctgc cccagggctc
     2221 tcacaccagt atgctcactt tttaaaaaaa acagaacaaa aaaccacagg ccattagcaa
     2281 ccggaacaca gtaagaaggt gatactctgt ggtcatcccc caaatcaggt caggccttgt
     2341 ttagtttatc tgtccatgct tccctgtgtg gaagatggcc gtccaggtca ttccccagtc
     2401 cttcctctga catttccatg gtcgtttgca gagtcaagcc agacagcagt gtctgcggtt
     2461 atctttcttc ctggtagaag gtgacctttg aacctgtcct ccaccctggg catttcccag
     2521 cataggtggt cataagctgt ctccttcaag ctccctagag atcacctttg gcttccagaa
     2581 ggccctgtat agcgcactgc ttgacggcaa tagaatcagg tttggaagcg ctctccagtg
     2641 ttgaagaaca cgtgtgcttc agtgtcctgt gcttgtggca tcacggtggg agatggtgtg
     2701 agatcttcct tgctcagaaa agaactgaag ggtaactaag cggctccagt ttgtgcagtg
     2761 acattggcgt cttggcgagg cggcatccag aatgagctca ggttatgcgc atccagaggt
     2821 cacctgtgaa gctgcttggc tcgggtcgag gccaggtctg gtgactttgt tggtgctaca
     2881 cggttgcagc tgtccagccc agggtcagtg gtgcctcctg tttctcaatg gccactgtgt
     2941 gtgtgctgtg tgtaatgtca gatgtgagca caatcctttg tgtgtccttt gtagttggtt
     3001 cactggcttt ggcttttttt tttttttttt ttttggttct ttttttcgga gctggggacc
     3061 gaacccaggg ccttgcgctt cctaggcaag cgctctacca ctgagctaaa tccccagccc
     3121 caggctttgg ccttttatga cctaggtctt aaccccgaaa cactccggtc atggggtttg
     3181 actaggaggc agtctaaaga ccgctccagt gacactggat gggggggact gaaggaaagg
     3241 cttgggacat gggctcttgt gtagagggaa gctttgtgtg ctctcagccc cacccttacc
     3301 tttcagtgtc gtttggtgtc ttgcctactg ttctcagtgt tgggacattt tttctttttt
     3361 cctttttttg ggggggaggg gagggaaggg tgggtcaaaa caaggtttct ctgtgtagcc
     3421 ctgactgtcc tgaacttact ctgtagacca ggctggccag acctcaaact cgagatccac
     3481 ctgcctctgt ctccagagtg ctaggattaa aggtgtgagc caccattgcc tggccccaaa
     3541 ttgggacatt gtttaatggt gggaccttgc aggaccaagg gctgggttac agttgtcttt
     3601 ggagttgatt actaactgtg acagagagga tttttctcat aaaaagattt tgggctcagt
     3661 gtcttttgta agtgcctaga tatgtaagct ggctgtgcac agaaagtctt atgagaacgg
     3721 tgacattaaa cctcagagtc tgagaatctt acaagataaa agataaggct gagcctgagg
     3781 tcggacctgc ttgctgttgc agtctgtgga gctgataggg aacgcctgca ccaggagttg
     3841 gtgaacgggg cacagtgtta gaatgtaacg gatgggggtg atggcaaaat ttgaggaaga
     3901 taggagggaa gtgggtaacc cagtcattta accagcgcct caggagatgc tgtgtaatgt
     3961 ctgatgtgta caggcccgag tgctcttcag gaaatccagg aaggggcatc ttctcggagt
     4021 cagagaatgt gccttaggga aataaatgtt ccgagcacag gcttcaactc aagtggagag
     4081 ttttagtgtt ggccatcagc gacttctgag gtcagtgcaa cgagctcagg aggatactgc
     4141 tgccctttta ggaggcagag ccactccagt gtctgctgat ggacttctaa tctggagaat
     4201 tatattctcc cctaagggca atgtgtggat tttgcctctt acattttatt tactttggaa
     4261 gttgcacttg ttcacctacc agtgtttacg gaatcctgtg tatgggatgc tttttctata
     4321 ataaagtatt tttatttgtg
//
