LOCUS       XM_017600381            3713 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus potassium calcium-activated channel
            subfamily U member 1 (Kcnu1), transcript variant X1, mRNA.
ACCESSION   XM_017600381
VERSION     XM_017600381.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017600381.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3713
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3713
                     /gene="Kcnu1"
                     /note="potassium calcium-activated channel subfamily U
                     member 1; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:680912"
                     /db_xref="RGD:1585877"
     CDS             65..3436
                     /gene="Kcnu1"
                     /codon_start=1
                     /product="potassium channel subfamily U member 1 isoform
                     X1"
                     /protein_id="XP_017455870.1"
                     /db_xref="GeneID:680912"
                     /db_xref="RGD:1585877"
                     /translation="MSQTLLDNLNKKELTETSCTIEIQAAFILSSLATFFGGLIVLFI
                     FRIALKISRNWKTVKGPRGILELFSSRRIEVNPLRKLYFHGVFRERIEMLLSAQTIVG
                     QVLVILVFVLSIGSLVIYFINSMDPVRKCSSYEDKIVHVDLSFNAFFSFYFGLRFWAA
                     EDKIKFWLEMNSIVDIFTIPPTFISYYLKSNWLGLRFLRALRLLELPKILQILQVIKT
                     SNSVKLSKLMSIVISTWFTAAGFLHLTFPLPSLFGQVENSGDPWLNGRNSQTMSYFES
                     IYLVTATMSTVGFGDVVAKTSLGRIFIVFFTLGSLILFANYIPEMVELFSTRKKYNKP
                     YEAVKGKKFIVVCGNITIDSVTAFLRNFLHRKAGEINIEIVFLGEAPPSVELETLLKC
                     HTSCTTFVCGTALKFEDLKRVAVENAEACLILANPFCSDLHDEDNSNIMRVLSIKNYY
                     PQTRVIIQMLQSQNKVFLSRIPNWNWSAGDNIICFAELKLGFIAQGCLVPGLCTFLTT
                     LFIEQNQKVFPKHPWQKHFLNGLKNKILTQRLSNDFVGMTFPQVSRLCFLKMHLMLIA
                     IQHKPLFHNCCSLILNPSSQVRLNKDTLGFFIAESSKDVKRALFYCSNCHSDVCNPEL
                     IGKCGCKNRSRQQLVAPTIMVMQSSLNEFAPTAEIYTSISREQTSSVTILTTRNMPVD
                     TADDSDMLDSSGMFHWCRSMPLDKVVLKRSDKATHEFQNHIVACVFGDAHSSLMGLRN
                     FVMPLRASNYTRQELKDIVFIGSLEYFQREWRFLRNFPKIHIMPGSALYTGDLHAVNV
                     EQCSMCVILATPYKALSSQLLVDTETIMATLNIQALRISCPMSGSSKKEVNTSPTFSK
                     YEGKQRYQQIPILTELKNPSNIHFIEQMDGLDEAIKGTSLHLSTAFSTGTVFSGTFLD
                     SLLATAFYNYHVLELLQMLVTGGINSQTEHCLVKEKLYEGNEGGATFLSGRTRCKLGL
                     LSLDETILSDIKPKKTFGQLFCGSLDNLGILCVGLYRMMDEGEHNSERKRFVITRPAN
                     ECHLLPSDLVFCAIPFSITCDKSESNASIQDQDTTTNVTSMSQGSNFQGAQSALNEHS
                     LSPASAMGEKKSPQLLNSRVYPLNLFDASDIDPGK"
ORIGIN      
        1 gcctcctggg actgttgccg ggtgaccatg acatcataga ctagcccaac agtgtcttct
       61 caagatgtct caaacattgc tagacaattt aaataagaaa gaattgacgg aaacgtcatg
      121 tacaatcgaa atccaagcag cattcattct ctcctccttg gcgactttct tcgggggact
      181 aatcgtcttg ttcattttca gaatagcctt gaaaatctca agaaactgga aaaccgtcaa
      241 ggggccaaga gggatcttgg aactattttc atcacgtagg atcgaggtta atcctttgag
      301 aaaactttac tttcatggag tatttcgtga gcgtatcgaa atgctgcttt ctgcgcagac
      361 cattgtgggg caagtgttgg tgatcctcgt ctttgtgcta agcatcgggt ctcttgtgat
      421 ctatttcatc aattcaatgg accctgttcg aaagtgttct tcatatgaag acaaaattgt
      481 ccatgtggat ttgagtttca atgctttctt tagtttctac tttgggttga ggttttgggc
      541 agctgaagac aagatcaagt tctggttgga gatgaattca attgtagaca tttttaccat
      601 cccaccaacc tttatttcct attatttgaa gagtaattgg ctgggtttga ggtttttaag
      661 agctctgcgg ttgctcgaac ttcctaaaat cttacagatc ctgcaagtca tcaagaccag
      721 caattcagtg aagctttcca aactgatgtc aatcgttatc agtacctggt tcacagcagc
      781 aggattcctt cacctgacct ttcccttgcc atctctcttt ggacaggtag aaaattctgg
      841 tgacccctgg ctcaatggta gaaactcgca gacgatgtca tacttcgagt ccatttatct
      901 ggtgacggca acaatgtcaa ctgttggctt tggggatgtg gtggccaaga cttccctggg
      961 acggattttc atcgtcttct tcacccttgg aagtttgata ctatttgcaa actacattcc
     1021 agaaatggtg gagctttttt ctaccaggaa gaaatacaac aagccctacg aagcagtcaa
     1081 gggaaagaag ttcatcgtgg tctgtggaaa catcacaatt gacagtgtga ctgctttcct
     1141 aaggaatttt ctccaccgga aggcaggaga aatcaatatc gagatcgtgt tccttggaga
     1201 ggctcctcct tccgtggaac tagaaacctt gctcaagtgc cacacatcct gcaccacctt
     1261 tgtatgtggc accgcgctga agttcgagga tctgaagaga gttgcagtgg agaacgcaga
     1321 agcctgcctg atcctagcca acccattctg cagtgacttg cacgacgagg ataactcgaa
     1381 catcatgagg gtgctctcga tcaagaacta ttatccacag accagagtca tcattcagat
     1441 gcttcagtcc caaaacaagg ttttcctgtc aagaatcccc aactggaact ggagtgccgg
     1501 agacaatatc atctgctttg cagaattaaa acttggattt atcgcccaag gctgcttggt
     1561 gccagggctg tgcacctttc ttacgactct gtttatcgaa caaaaccaaa aggtttttcc
     1621 taaacatcct tggcaaaaac atttcttgaa tggcttgaag aacaaaattc tgacacagcg
     1681 cctctctaac gacttcgttg ggatgacgtt tcctcaggtc tccaggctct gcttcctgaa
     1741 gatgcatctc atgctgatag ccatccaaca caagcccctc ttccacaatt gttgctctct
     1801 gatactaaat ccatcatcac aagtgaggct gaataaggac accttagggt tcttcatcgc
     1861 agaatcctcg aaagacgtca aaagagccct cttttactgc tccaactgtc acagcgatgt
     1921 gtgcaatcct gagctgattg ggaagtgtgg ctgcaaaaac aggagccgac agcaactcgt
     1981 ggcgccaacc atcatggtga tgcaaagcag cttgaacgaa ttcgccccca ctgcagaaat
     2041 ttacacttct atttcaagag aacagacgag ctcagtcacc attttaacaa ccaggaacat
     2101 gccggttgac acagcagatg attcggacat gctagacagc agcggcatgt ttcactggtg
     2161 tagatcaatg cccttggaca aggtggttct gaaacgatct gacaaggcaa cacacgagtt
     2221 tcagaaccac atagtggcat gcgtgtttgg agacgcccac tcttccctga tggggctccg
     2281 gaatttcgtg atgcccctga gagccagcaa ctacacccgg caggagctga aggacattgt
     2341 tttcattggg tcccttgaat acttccagag agaatggcgg tttctccgga actttcccaa
     2401 gatacacatt atgcctggat ctgcgctcta tactggagat ctgcatgcag tcaatgtaga
     2461 gcagtgttct atgtgtgtta tcttagccac cccttacaag gcactgagca gccagcttct
     2521 ggtggacact gagaccatca tggccaccct caacatccag gccctgcgga tcagctgccc
     2581 tatgtcaggg tcttcaaaga aagaagtaaa tacatcacct actttttcta aatatgaagg
     2641 gaagcaaaga taccagcaga tccccattct cactgaactg aagaatccct ccaacatcca
     2701 ctttattgag cagatggatg gactggacga agcgatcaaa ggaacaagct tgcacctcag
     2761 cactgccttc tctacgggta ctgtcttttc gggcaccttc ttggattctc tcctggccac
     2821 ggctttctac aactaccatg tcctggaatt gcttcagatg ctagtgaccg gaggtataaa
     2881 ctctcagacg gagcactgtt tggttaagga gaagctgtat gaaggaaatg agggcggtgc
     2941 caccttcttg tccgggagga cgcggtgtaa gctgggactc ctctctttag acgaaaccat
     3001 tctatcagac attaagccga aaaaaacctt tggacagctg ttctgtggct cactggataa
     3061 tctggggatc ctatgtgttg gcttataccg tatgatggat gaaggggagc acaattcaga
     3121 acgcaaaagg tttgtgatca ccaggccggc caacgagtgt cacttgctgc cctcagatct
     3181 tgtgttctgt gctattcctt tcagtatcac ctgtgacaaa tcagaaagca atgcttcaat
     3241 tcaggatcaa gacaccacga caaatgtgac atccatgagc caggggtcga acttccaggg
     3301 tgcccagagt gccctcaatg agcacagtct tagcccagcc agtgccatgg gagagaagaa
     3361 atctcctcag cttttgaact ctcgagtcta tcctttgaac ttattcgatg ccagtgacat
     3421 tgatccagga aaataaagac ggaagcatgc tcttttccta ccgatcgctt agtggccggc
     3481 gagccgtcca gcccacactg ccgtgggagg aaccaacctc cttatcccag tggatccggt
     3541 gtgacgagta aaggtgtacc cggtgaatgg tattaaagct cactgctccc tttccttaag
     3601 cgcgaatggg ttcatttggg ctgaattaag aagtcctcca cttggacaga tgccagttgg
     3661 aactggaacc aatgtgtctg taagacctag gtatacctaa gacaggacag atg
//
