LOCUS       XM_039094783            4071 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus potassium calcium-activated channel
            subfamily N member 1 (Kcnn1), transcript variant X3, mRNA.
ACCESSION   XM_039094783
VERSION     XM_039094783.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4071
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4071
                     /gene="Kcnn1"
                     /gene_synonym="KCa2.1; SK1; SKCa1"
                     /note="potassium calcium-activated channel subfamily N
                     member 1; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 3 ESTs, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 22 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:54261"
                     /db_xref="RGD:2962"
     CDS             2054..3664
                     /gene="Kcnn1"
                     /gene_synonym="KCa2.1; SK1; SKCa1"
                     /codon_start=1
                     /product="small conductance calcium-activated potassium
                     channel protein 1 isoform X1"
                     /protein_id="XP_038950711.1"
                     /db_xref="GeneID:54261"
                     /db_xref="RGD:2962"
                     /translation="MSSRSHNGSVGRPLGSGPGFLGWEPVDPEAGRPRQPTQGPGLQM
                     MAKGQPAGLSPSGPRGHSQAQEEEEEEEDEDRPGSGKPPTVSHRLGHRRALFEKRKRL
                     SDYALIFGMFGIVVMVTETELSWGVYTKESLCSFALKCLISLSTVILLGLVILYHARE
                     IQLFLVDNGADDWRIAMTWERVSLISLELAVCAIHPVPGHYRFTWTARLAFSLVPSAA
                     EADVDVLLSIPMFLRLYLLARVMLLHSRIFTDASSRSIGALNRVTFNTRFVTKTLMTI
                     CPGTVLLVFSISSWIVAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVP
                     HTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAA
                     NVLRETWLIYKHTRLVKKPDQSRVRKHQRKFLQAIHQAQKLRTVKIEQGKVNDQANTL
                     ADLAKAQSIAYEVVSELQAQQEELEARLAALESRLDVLGASLQALPSLIAQAICPLPP
                     PWPGPSHLTTAAQSPQSHWLPTTASDCG"
ORIGIN      
        1 tcctccaccg ccactgcgcc cacgcggtcc ggggtaatcc gcttgaacca gagaggagct
       61 cctggagagg gcggcggggg agggctgccg gcggggtctt ccccaggttt cctccctcgc
      121 ggtcgccatg gcaaccgtgc gggggctgca gagagggcta cagggaagcc gggtaggtgt
      181 gcgcatgcgc cgccaaggcc gggggtttcc cttttgccgg gcctggacaa ctaagacaaa
      241 gggatccacg cgctgctgga gaggagagcg gggtgggcct cgcacggtta gccacacctg
      301 ttatcccaac acttagtgga ggcatgagaa ttaggagttc aaggccatta tgggctccgt
      361 gagctcttgt gaaaaaaatc acatggcaca aagcctgcag ccagaatttg gctcctctcc
      421 ccctgtctct ccactcattt ccccctcccc cctgcgactc cccatccaca accgtctccc
      481 cagcctagcc ccctccactt ccccaggtct ccaccctctc cccatcccgg tgtcatgaac
      541 tccagcccag tgtatggtac aaagacctgg ctccctcacg tagctccgag cggtccaacc
      601 gggtgactgg ccccaccggc agcgcctttg gtgtactctg gggcgcagcc cgtgcctctc
      661 cgtccgcatc actcaggtgc gtggcagtgt ccagagggac agtctcctgt cgcggaccgc
      721 agcgccactc tttagggtgc agacgccttc ctcgcgcctt tgtccttagt acaaagcttt
      781 cttccatcct ttgtggagag agcgtgtgac acacaggcta tgggaataat gagccgcaaa
      841 gagggtcagg tcccagcgga caccctgaac acacacgcta tttgatcccc agtggcgggg
      901 cagccccact gcgttactga agtttcgggg acgccctaca gaaggcatga aggccttctg
      961 tgctgggtcc aaaggtcctt cccagctgtc tgtgcacaga cccccttctc cggcaccttt
     1021 atttgaggtt gactcgcccc aattgccgct tcctcccggc tccctaagtg tctttaggtg
     1081 cctctttctc cttgaggagg gtgatgaatg tatcaggaaa ggagggcgtt agggacctga
     1141 aaccggggcg agatggccag taaggacgcc ggtcgggaaa gatcaccttc agtctatgaa
     1201 tgagatgtgg gagtagttgg cacaggacag agctggccaa agggtccaga tgctaggggt
     1261 cacctagggg ttctgggaaa gactatgggt ctgggaaaag ccaggttggt ctcctcgctt
     1321 gcaaggagag acagacaggg gagatgtgct ggaccggaat gtgacctgtc accaagctat
     1381 caaggtgttt catgaggcag ggattgttgg gagtccaaga atcgcggctt gaggactcca
     1441 ctcagggcga tacaaggttc agggttcccc acagcgatgg gagtcctttg tcgtcccttc
     1501 ccccacatct acgtccctcc ctcgagctct gttcttcaga ccccgaagtc cccctttctg
     1561 ccatgtctct ccccgcccgc agctccgcga tgggaggggc cctcgcagcc cgcggctgtc
     1621 gccagcgcat cccagccccg cccgtccgag gaatccccgg ccaccgcggg agcgccgcgt
     1681 agctcttgac aagctgcggg gctgggggac tggcgcgagg ggaacggcta tttttagaat
     1741 gtatggaaga aaaaatacaa aaacaaaaat aacaacaacg aaaaatgatg gagactctta
     1801 aaggcctcca gactcgcagg aggaaatccc cccgtctcag accgtggctg aaggacgcag
     1861 ggactccagc agctgaagct gaagactgct ggtgtggaga agaaaagagc cacgggcaga
     1921 gccatcccac ctctgagggc aacttcaagg caccaagtaa cacggacctc aggtctgttc
     1981 ggaagccctt ctgctgaacc atgctgggcc ccaacgggcc tgctgcaagt ccagcccacg
     2041 gaggcaggtg gccatgagta gccgcagcca caatggcagt gtggggcggc ctctgggcag
     2101 tgggcctgga ttcctgggct gggaacctgt ggaccccgag gcaggccgcc cccgacagcc
     2161 cacccaaggc cccggcctgc agatgatggc caagggtcag cctgctgggc tgtcacccag
     2221 tggccccagg ggccactccc aggcgcagga ggaggaagag gaagaggagg atgaggacag
     2281 gccaggctca gggaagcccc cgaccgtcag tcaccgcctg ggccaccgta gggccctctt
     2341 cgagaagcgt aaacgactca gtgactatgc actcatcttt ggcatgttcg ggattgtcgt
     2401 catggtgaca gaaacagagc tgtcctgggg tgtgtacacc aaggagtctc tgtgctcatt
     2461 cgccctgaaa tgcctaatca gcctctccac tgtcatcctg cttggccttg tcatcctcta
     2521 ccacgcccga gagatccagc tgttcctggt ggacaatggt gccgatgact ggcgcattgc
     2581 catgacgtgg gagcgagtgt ccctgatctc gctggagttg gctgtgtgtg ccatccaccc
     2641 agtgcctggc cactaccgct tcacatggac ggcgcggctg gccttctccc tggtgccgtc
     2701 agcagccgag gcggatgtgg atgtgcttct gtccatcccc atgtttctgc gcctctatct
     2761 gctggctcgg gtcatgctcc tgcacagccg catcttcacg gacgcatcca gtcgcagcat
     2821 cggagccctg aaccgtgtca ccttcaacac acgctttgtc accaagacac tcatgaccat
     2881 ctgccctggc actgtgctgt tggtcttcag catctcctcc tggatcgtcg ctgcatggac
     2941 agtgcgcgtg tgtgagaggt accatgataa acaggaagtg accagcaact tcctgggggc
     3001 catgtggctc atctccatta ccttcctgtc catcggctac ggggacatgg tgccgcacac
     3061 ctactgtggg aagggcgtgt gtctgctcac cggcatcatg ggagcaggct gcactgcact
     3121 cgtggtggcc gtcgtggccc ggaagttgga actcaccaag gctgagaaac acgtgcacaa
     3181 cttcatgatg gacacacagc tcaccaagcg ggttaaaaac gccgctgcaa acgttctcag
     3241 ggagacatgg ctcatctaca aacacaccag gctagtgaag aagccagacc aaagccgggt
     3301 tcggaaacac cagcgtaagt tccttcaggc catccatcag gcgcagaagc tccggactgt
     3361 gaagattgaa caagggaagg tgaatgatca ggccaacacg ctggctgacc tggccaaggc
     3421 acagagcatc gcatatgagg tggtgtcgga gctgcaggcc cagcaggagg agttggaggc
     3481 ccgtctggct gccctggaga gccgcctgga tgtcctaggc gcctccctgc aggccctacc
     3541 aagtctcata gcccaagcca tatgccctct accaccaccc tggcccgggc ccagtcacct
     3601 gaccacagcc gcccagagcc cacaaagcca ctggctgccc accacggcat cagactgtgg
     3661 gtgagggcct gctggtcact agactgctta atcttggcca ttgtgtggcc acagctagct
     3721 cctcactgtt ctggacctcc ggacgactga gtttgcaagc ttgggtggaa ctgaactgac
     3781 tggactggca ttcattcctc tgaggctgga ccatgagatc catggcccct tagctgtccc
     3841 aagccccagg agggcaagga gtagtagaag gggggcctcg acatttctaa gtaaatcaga
     3901 agcctccagc ccacttcctg tttacatggc aggggggcca tgaccatctc cccagaggag
     3961 gtggatgacc cagcctgtgg gttcctgaat gggcaaggac aggggtggaa agtcactgcc
     4021 catgcattga gtacttgctg tatacaggga ctgatacaat gacttttctt c
//
