LOCUS       XM_039094781            4489 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus potassium calcium-activated channel
            subfamily N member 1 (Kcnn1), transcript variant X1, mRNA.
ACCESSION   XM_039094781
VERSION     XM_039094781.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4489
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4489
                     /gene="Kcnn1"
                     /gene_synonym="KCa2.1; SK1; SKCa1"
                     /note="potassium calcium-activated channel subfamily N
                     member 1; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 3 ESTs, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 22 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:54261"
                     /db_xref="RGD:2962"
     CDS             2472..4082
                     /gene="Kcnn1"
                     /gene_synonym="KCa2.1; SK1; SKCa1"
                     /codon_start=1
                     /product="small conductance calcium-activated potassium
                     channel protein 1 isoform X1"
                     /protein_id="XP_038950709.1"
                     /db_xref="GeneID:54261"
                     /db_xref="RGD:2962"
                     /translation="MSSRSHNGSVGRPLGSGPGFLGWEPVDPEAGRPRQPTQGPGLQM
                     MAKGQPAGLSPSGPRGHSQAQEEEEEEEDEDRPGSGKPPTVSHRLGHRRALFEKRKRL
                     SDYALIFGMFGIVVMVTETELSWGVYTKESLCSFALKCLISLSTVILLGLVILYHARE
                     IQLFLVDNGADDWRIAMTWERVSLISLELAVCAIHPVPGHYRFTWTARLAFSLVPSAA
                     EADVDVLLSIPMFLRLYLLARVMLLHSRIFTDASSRSIGALNRVTFNTRFVTKTLMTI
                     CPGTVLLVFSISSWIVAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVP
                     HTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAA
                     NVLRETWLIYKHTRLVKKPDQSRVRKHQRKFLQAIHQAQKLRTVKIEQGKVNDQANTL
                     ADLAKAQSIAYEVVSELQAQQEELEARLAALESRLDVLGASLQALPSLIAQAICPLPP
                     PWPGPSHLTTAAQSPQSHWLPTTASDCG"
ORIGIN      
        1 tcctccaccg ccactgcgcc cacgcggtcc ggggtaatcc gcttgaacca gagaggagct
       61 cctggagagg gcggcggggg agggctgccg gcggggtctt ccccaggttt cctccctcgc
      121 ggtcgccatg gcaaccgtgc gggggctgca gagagggcta cagggaagcc gggtaggtgt
      181 gcgcatgcgc cgccaaggcc gggggtttcc cttttgccgg gcctggacaa ctaagacaaa
      241 gggatccacg cgctgctgga gaggagagcg gggtgggcct cgcacggtta gccacacctg
      301 ttatcccaac acttagtgga ggcatgagaa ttaggagttc aaggccatta tgggctccgt
      361 gagctcttgt gaaaaaaatc acatggcaca aagcctgcag ccagaatttg gctcctctcc
      421 ccctgtctct ccactcattt ccccctcccc cctgcgactc cccatccaca accgtctccc
      481 cagcctagcc ccctccactt ccccaggtct ccaccctctc cccatcccgg tgtcatgaac
      541 tccagcccag tgtatggtac aaagacctgg ctccctcacg tagctccgag cggtccaacc
      601 gggtgactgg ccccaccggc agcgcctttg gtgtactctg gggcgcagcc cgtgcctctc
      661 cgtccgcatc actcaggtgc gtggcagtgt ccagagggac agtctcctgt cgcggaccgc
      721 agcgccactc tttagggtgc agacgccttc ctcgcgcctt tgtccttagt acaaagcttt
      781 cttccatcct ttgtggagag agcgtgtgac acacaggcta tgggaataat gagccgcaaa
      841 gagggtcagg tcccagcgga caccctgaac acacacgcta tttgatcccc agtggcgggg
      901 cagccccact gcgttactga agtttcgggg acgccctaca gaaggcatga aggccttctg
      961 tgctgggtcc aaaggtcctt cccagctgtc tgtgcacaga cccccttctc cggcaccttt
     1021 atttgaggtt gactcgcccc aattgccgct tcctcccggc tccctaagtg tctttaggtg
     1081 cctctttctc cttgaggagg gtgatgaatg tatcaggaaa ggagggcgtt agggacctga
     1141 aaccggggcg agatggccag taaggacgcc ggtcgggaaa gatcaccttc agtctatgaa
     1201 tgagatgtgg gagtagttgg cacaggacag agctggccaa agggtccaga tgctaggggt
     1261 cacctagggg ttctgggaaa gactatgggt ctgggaaaag ccaggttggt ctcctcgctt
     1321 gcaaggagag acagacaggg gagatgtgct ggaccggaat gtgacctgtc accaagctat
     1381 caaggtgttt catgaggcag ggattgttgg gagtccaaga atcgcggctt gaggactcca
     1441 ctcagggcga tacaaggttc agggttcccc acagcgatgg gagtcctttg tcgtcccttc
     1501 ccccacatct acgtccctcc ctcgagctct gttcttcaga ccccgaagtc cccctttctg
     1561 ccatgtctct ccccgcccgc agctccgcga tgggaggggc cctcgcagcc cgcggctgtc
     1621 gccagcgcat cccagccccg cccgtccgag gaatccccgg ccaccgcggg agcgccgcgt
     1681 agctcttgac aagctgcggg gctgggggac tggcgcgagg ggaacggcta tttttagaat
     1741 gtatggaaga aaaaatacaa aaacaaaaat aacaacaacg aaaaatgatg gagactctta
     1801 aaggcctcca gactcgcagg aggaaatccc cccgtctcag accgtggctg aaggaccttc
     1861 cagtctgggc cgcgtcatca gctgctcgag tctcccggcg tctctccctc tcgaccctcc
     1921 cctgccccag gctcagcttc ccgcaggagt gcagttctct gtgggaggcg acagctgctg
     1981 cgcctgactg ggttgaaggg caagggttcc cggtcctggt cgcagcctca gtttacccgt
     2041 ctgtaaactg tgtgtgtaaa gccagcggat accaaggttc accccagccc ttggcgtgtc
     2101 ctcggtcact gtcagcctcg gcggggtgca cgctgggagc cgccgcggaa gggacacctg
     2161 accgtcccca gcgggccgcg agggtggggg tccgcgctgc agcggcgcgc gcacctctgt
     2221 tcccacgccc ttgcccggct gcttgttcac ttggttttgc tctcggacca ggacgcaggg
     2281 actccagcag ctgaagctga agactgctgg tgtggagaag aaaagagcca cgggcagagc
     2341 catcccacct ctgagggcaa cttcaaggca ccaagtaaca cggacctcag gtctgttcgg
     2401 aagcccttct gctgaaccat gctgggcccc aacgggcctg ctgcaagtcc agcccacgga
     2461 ggcaggtggc catgagtagc cgcagccaca atggcagtgt ggggcggcct ctgggcagtg
     2521 ggcctggatt cctgggctgg gaacctgtgg accccgaggc aggccgcccc cgacagccca
     2581 cccaaggccc cggcctgcag atgatggcca agggtcagcc tgctgggctg tcacccagtg
     2641 gccccagggg ccactcccag gcgcaggagg aggaagagga agaggaggat gaggacaggc
     2701 caggctcagg gaagcccccg accgtcagtc accgcctggg ccaccgtagg gccctcttcg
     2761 agaagcgtaa acgactcagt gactatgcac tcatctttgg catgttcggg attgtcgtca
     2821 tggtgacaga aacagagctg tcctggggtg tgtacaccaa ggagtctctg tgctcattcg
     2881 ccctgaaatg cctaatcagc ctctccactg tcatcctgct tggccttgtc atcctctacc
     2941 acgcccgaga gatccagctg ttcctggtgg acaatggtgc cgatgactgg cgcattgcca
     3001 tgacgtggga gcgagtgtcc ctgatctcgc tggagttggc tgtgtgtgcc atccacccag
     3061 tgcctggcca ctaccgcttc acatggacgg cgcggctggc cttctccctg gtgccgtcag
     3121 cagccgaggc ggatgtggat gtgcttctgt ccatccccat gtttctgcgc ctctatctgc
     3181 tggctcgggt catgctcctg cacagccgca tcttcacgga cgcatccagt cgcagcatcg
     3241 gagccctgaa ccgtgtcacc ttcaacacac gctttgtcac caagacactc atgaccatct
     3301 gccctggcac tgtgctgttg gtcttcagca tctcctcctg gatcgtcgct gcatggacag
     3361 tgcgcgtgtg tgagaggtac catgataaac aggaagtgac cagcaacttc ctgggggcca
     3421 tgtggctcat ctccattacc ttcctgtcca tcggctacgg ggacatggtg ccgcacacct
     3481 actgtgggaa gggcgtgtgt ctgctcaccg gcatcatggg agcaggctgc actgcactcg
     3541 tggtggccgt cgtggcccgg aagttggaac tcaccaaggc tgagaaacac gtgcacaact
     3601 tcatgatgga cacacagctc accaagcggg ttaaaaacgc cgctgcaaac gttctcaggg
     3661 agacatggct catctacaaa cacaccaggc tagtgaagaa gccagaccaa agccgggttc
     3721 ggaaacacca gcgtaagttc cttcaggcca tccatcaggc gcagaagctc cggactgtga
     3781 agattgaaca agggaaggtg aatgatcagg ccaacacgct ggctgacctg gccaaggcac
     3841 agagcatcgc atatgaggtg gtgtcggagc tgcaggccca gcaggaggag ttggaggccc
     3901 gtctggctgc cctggagagc cgcctggatg tcctaggcgc ctccctgcag gccctaccaa
     3961 gtctcatagc ccaagccata tgccctctac caccaccctg gcccgggccc agtcacctga
     4021 ccacagccgc ccagagccca caaagccact ggctgcccac cacggcatca gactgtgggt
     4081 gagggcctgc tggtcactag actgcttaat cttggccatt gtgtggccac agctagctcc
     4141 tcactgttct ggacctccgg acgactgagt ttgcaagctt gggtggaact gaactgactg
     4201 gactggcatt cattcctctg aggctggacc atgagatcca tggcccctta gctgtcccaa
     4261 gccccaggag ggcaaggagt agtagaaggg gggcctcgac atttctaagt aaatcagaag
     4321 cctccagccc acttcctgtt tacatggcag gggggccatg accatctccc cagaggaggt
     4381 ggatgaccca gcctgtgggt tcctgaatgg gcaaggacag gggtggaaag tcactgccca
     4441 tgcattgagt acttgctgta tacagggact gatacaatga cttttcttc
//
