LOCUS       XM_006230297            6266 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus katanin interacting protein (Katnip),
            transcript variant X4, mRNA.
ACCESSION   XM_006230297
VERSION     XM_006230297.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006230297.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6266
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..6266
                     /gene="Katnip"
                     /gene_synonym="RGD1307324"
                     /note="katanin interacting protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     ESTs, 90 long SRA reads"
                     /db_xref="GeneID:361646"
                     /db_xref="RGD:1595846"
     CDS             274..5007
                     /gene="Katnip"
                     /gene_synonym="RGD1307324"
                     /codon_start=1
                     /product="katanin-interacting protein isoform X2"
                     /protein_id="XP_006230359.1"
                     /db_xref="GeneID:361646"
                     /db_xref="RGD:1595846"
                     /translation="MTDVIFHSRPTNPRILKHLKAKDPVQLRLEHLEQGFSVYVNGAN
                     SELKTSPRKAVHTDFSRSASQAEGSQDYGRRTLFREAEEVLRCSSRTAPGKVQRRGWH
                     QKSVQIRTEAGSRLHIEPPLDCSEDFESHEDVIDKHEDATGDHTQELRKGLGLSTSLQ
                     TQEDGSSDEYDSIEEDVLSETETEDPVLPVYARDECPLPSHDAVLKDVPKDQELEGRP
                     PQTTDTLVVMEFNPASKSNKMERILSAKRKENAEVFILSKPESVLNPQPPAVFPDQER
                     ACSRSGSRRDRPLSATRKACAAEDREEDASAVLKAIQVENAALQQVLLSQDPELQTSP
                     QQDAKEPPVKSRPSLLKAKEDIPEPLAVTPVTTNPELCRTAGGAKAVSQALDRMSPLG
                     SRQQHKLLGVLQTVESDTTHPSQVAIPTEKPGPDPEEKWKARIDEIEDAIYVTMEILS
                     NWGNASWVGLTEVQFFDLNNIKLYVSPHDVDIRNAVLPGELGCLVNRDLVSKKDPPVW
                     TCPFHPPLQLYFIIHNMQQLRDFGLATIKVRNYWTADGDLDIGAKNVKLYVNKSLLFD
                     GVLEKGGGEAPFDCTIPVDLQSEKNENPEKALRTDWKESKGALKMAATGKDKELGLSC
                     LQPAESLDMSVSSQGDFLGEKVNATYCPKKSLSKLQEDVRLLATPASMGDGPSVPSSS
                     SPGKCLPLEEELSFIQQLENLRSRKIPEPTGKTPHWLQPSLTGMGKKQTVRKPKPLWL
                     SPEKDLEQKSRLPSYDVIGDASGEVEAREKGPRREQGRSSSWNVITEERPPKASSKAC
                     GSDLDIFSQPPSRDRPASGRRALKKDASSSHGDDRPASKEDAQATQTLPWLQWDGEQE
                     HALHASWDSLTAFDRAHRGRISALEPQGDILDEFLKQQRSSRHEEYPAPGREEESEPS
                     TETDGDSDFKIPVLPYGQHLVIDIKSTWGDRHYVGLNGIEIFSSSGEPVQISSITADP
                     PDINILPAYGKDPRVVSNLIDGVNRTQDDMHVWLAPFTPGMTHTISIEFTHPCQVALI
                     RIWNYNKSRIHSFRGVKDITMLLDTQCIFEGEIAKASGTLMGAPEHFGDTILFTTDED
                     ILEAIFCLDDTFDMDAESLCGLQPEEALRRPSTADGEGQDERPFTQAGLGAQDQVPGL
                     ELQSGPPVSDVFTPEPGIFYGLCLRLNFTASWGDLHYIGLTGLEVVGKDGEALPIQPQ
                     QLSASPRDLNDLPEYSDDSRTLDKLIDGMNITTEDEHMWLIPFSPGLDHVVMIHFDRA
                     QSIAGLRLWNYNKSPEDTYRGVKIAHVSLDGLCVSPAEGFLIRKGPGNCHFDFAQEIL
                     FGDYLQTRLPPAPSRRLDAKSLERASMDYEAPLMPCGFIFQFQLLSSWGDPYYIGLTG
                     LELYDEHGERIPLSQNNIAAFPDSVNALEGVCGDVRTPDKLIDQVNDTSDGRHMWLAP
                     ILPGLVNRVYVIFDLPTTVSMIKLWNYTKTPQRGVKEFGLLVDDLLVYNGILAMVSHV
                     VGGILPTCEPTVPHHTILFAEDTDLCHQEKHTIISKPEEDQDIQMMNENQVITTSRRK
                     PATADPALRPKTCIREKESSRRWRC"
     polyA_site      6266
                     /gene="Katnip"
                     /gene_synonym="RGD1307324"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gtcaggccct gcggaaggtg gagagaagcc ggtcctgctc tcaggagaga aaggagggtt
       61 acagtaagga catggtgaca gactttgatg agaaacatga tgagtattta atattgcttc
      121 agcagagaaa ccggcacatt tcaggctggc aaaagataag cagtctgtaa tcagtgttcc
      181 tgccatcttt gttgaaaaga tggatgtgtc agctgcagaa gaaatggctg aaaagtaaac
      241 aaagaaggcg tccataagcc accatcttct tccatgactg acgtcatctt ccactcaagg
      301 cccacaaacc caaggatatt aaagcatctg aaagccaagg accccgtgca gctgaggttg
      361 gaacacttgg agcaaggttt ctctgtctat gtcaatgggg ccaattcaga gctgaagaca
      421 tccccacgga aagctgtgca cacagacttc tccagaagtg cctcacaggc ggaggggtca
      481 caagattatg gacgaagaac cctattccga gaagctgaag aagtcttaag atgcagctcc
      541 aggacagcac caggaaaagt ccagcgccga ggatggcacc agaaatctgt gcagatcaga
      601 actgaagctg gctctcgtct ccacattgaa cctcctctgg actgttcaga agattttgaa
      661 tcacatgagg atgtgattga caagcatgag gatgccactg gggaccacac acaggagctg
      721 agaaaaggtc ttggactcag cacaagcctc cagactcaag aggacggctc cagtgacgag
      781 tatgactcta ttgaggaaga cgtcctctct gagacagaga ccgaggaccc tgtattgcca
      841 gtgtatgcca gagatgaatg tccccttccc agccatgatg cagtgctgaa agatgtcccc
      901 aaggaccagg aactggaagg ccggcctccc cagaccacag acacccttgt ggtgatggag
      961 tttaacccag cttctaaaag taataaaatg gaacggattt tatctgctaa gcggaaagag
     1021 aatgctgagg ttttcatcct cagcaaacca gaatcagtcc tgaacccaca acccccggcg
     1081 gtgttcccag accaggagag ggcctgttcc agatctggaa gccggagaga taggcccttg
     1141 tcagccaccc gcaaagcatg tgcagccgag gaccgagagg aggatgcctc ggctgtgctg
     1201 aaagccatcc aggtggagaa tgcagctctg caacaggtgc tcctcagcca agatcctgag
     1261 ctccaaacca gtccacagca ggatgccaag gaaccaccag taaaatcacg gcccagtctg
     1321 ctgaaggcca aggaggacat ccctgagccg cttgctgtca ctccagtgac cactaatcct
     1381 gagctgtgca ggacagcagg gggagccaaa gctgtcagcc aagccctgga cagaatgagc
     1441 cctttgggaa gcagacaaca gcataaactt ctgggagtct tgcagactgt ggaaagtgac
     1501 actacccatc ccagccaggt ggctatacca acagagaagc caggaccaga tccagaggaa
     1561 aagtggaaag caagaataga tgaaattgaa gatgccatct atgtgactat ggaaatcctg
     1621 tctaactggg gcaatgcatc atgggtgggt ctcacagaag tccagttctt tgacctgaac
     1681 aacataaagc tttatgtctc acctcatgat gtggacatcc ggaacgcagt gttgccaggc
     1741 gagctgggct gccttgtcaa cagggattta gtgagcaaga aggaccctcc agtgtggacc
     1801 tgccctttcc accctccact tcagctctat ttcattattc acaacatgca acagcttcgt
     1861 gacttcggtc tggccacgat caaggttcgg aattattgga cagcagatgg ggatcttgac
     1921 attggtgcta agaacgtgaa actctatgtc aacaaaagcc tcctcttcga tggcgtgcta
     1981 gagaaaggag gaggtgaagc cccgtttgat tgtaccatcc ctgttgatct gcagagtgag
     2041 aagaatgaga acccagagaa ggccttgagg actgactgga aagaaagcaa aggcgccctc
     2101 aagatggctg ccacgggtaa ggataaggag cttgggctca gctgcttaca gccagctgaa
     2161 tccttggata tgagtgtttc ctcacaagga gatttccttg gtgaaaaggt gaatgctaca
     2221 tattgcccga agaaaagttt gtccaagtta caggaagatg taagactgtt ggcaacccct
     2281 gcgtctatgg gtgatgggcc cagtgtccct tcttcctcct ctcctgggaa atgtcttcct
     2341 ctagaagagg agctctcttt catccaacag ctggaaaacc tcagaagtag gaaaatccct
     2401 gaacccactg ggaaaactcc ccactggtta cagccttctc tcacaggaat gggcaaaaaa
     2461 cagacagtta ggaagcccaa acccctgtgg ctcagtcctg aaaaagatct ggaacagaag
     2521 agcaggcttc catcttatga cgttattggt gatgcttctg gagaggtgga ggccagagaa
     2581 aaaggcccga ggcgtgagca agggagaagt agcagctgga atgtcatcac tgaggagaga
     2641 cccccaaagg catcctccaa agcctgtggc agtgacttag acatctttag ccagcctcct
     2701 agcagggatc gccctgctag tgggaggagg gccctgaaga aggacgccag cagtagccat
     2761 ggtgatgacc ggccagccag caaagaagac gcccaggcca cccagacact gccttggttg
     2821 cagtgggatg gtgagcagga gcatgcactg catgcatcgt gggattccct cactgccttc
     2881 gaccgtgccc accggggccg catctctgcc ctggagccac agggggacat cctggatgag
     2941 ttcctgaagc agcagaggag cagccggcat gaggagtacc cagcccctgg cagagaggag
     3001 gagtcagagc cctccacaga gacagatggt gacagcgatt ttaaaattcc agtcctccct
     3061 tatggacagc acttggtcat tgacatcaag tctacatggg gagatagaca ctatgttggc
     3121 cttaatggca tagaaatatt cagctcctca ggggaaccag tacagatttc cagcattaca
     3181 gcggaccctc ctgacatcaa tattttacca gcttatggga aagacccacg tgtagtgtct
     3241 aacctcattg atggggtgaa caggacccag gatgacatgc atgtctggct ggcccccttc
     3301 acaccaggca tgacccacac catctctatt gaattcacac acccttgcca agttgccctg
     3361 attaggattt ggaattacaa taagtctcga atccactcct tccgaggtgt gaaagacatc
     3421 acaatgctgt tggatactca gtgcatcttt gaaggagaaa ttgccaaagc ctcaggaacc
     3481 ctgatgggag cccccgagca ctttggagac actattctat tcaccacgga tgaggacatc
     3541 ctagaggcca tattctgttt ggatgatact tttgacatgg atgctgagag tctgtgtggt
     3601 cttcagcctg aagaggcgct aaggaggccc agcactgccg atggtgaagg tcaggatgaa
     3661 aggcccttca cacaggctgg cttgggtgcc caggaccagg taccaggact agagctacaa
     3721 tccggccccc ctgtctctga tgtcttcact cctgagccag gcatcttcta cgggctatgc
     3781 ctccgactaa acttcacagc ctcctggggg gacctgcact acataggact cactggcctg
     3841 gaagtagtag gcaaggacgg cgaggccctg cccatccaac cacagcagct ctctgcctct
     3901 cccagggact taaatgacct gcccgagtac agtgatgact cacggaccct ggacaagtta
     3961 atcgatggca tgaacatcac caccgaggat gagcacatgt ggctgatccc cttttcccct
     4021 gggttggacc atgtggttat gatccacttt gacagagccc aaagcattgc tggcctgcgc
     4081 ctctggaact acaataaatc tccggaggac acctaccgag gggttaaaat cgcacatgtg
     4141 tccctggatg gcctgtgcgt gtctcctgca gaaggctttc tcatccgaaa ggggcctggt
     4201 aactgccatt ttgattttgc acaagaaatc ctctttgggg actacctaca gacccggcta
     4261 ccaccagcac ccagcaggag gttagatgcg aagagcctgg agcgagccag catggactac
     4321 gaggccccac tcatgccctg tggcttcatt ttccagttcc agctgctgtc cagctgggga
     4381 gatccctact acattggcct cacggggctg gagctgtatg atgagcatgg ggagaggatc
     4441 ccgttgtccc agaacaatat tgctgccttt ccagacagtg tgaatgcact agagggtgta
     4501 tgtggggatg tgagaacccc tgacaagctt atcgaccaag tcaacgacac cagtgatggc
     4561 aggcacatgt ggttggctcc catcctgcct ggcttggtga accgagtgta tgtcattttc
     4621 gatctgccca ccactgtgtc tatgatcaaa ctgtggaatt acacgaaaac acctcagcga
     4681 ggggtgaagg agtttggcct gctggtggat gacttgctgg tgtacaatgg cattcttgcc
     4741 atggtgagcc acgtggttgg gggcatccta cccacatgtg agcctaccgt gccccaccac
     4801 accatccttt ttgccgagga cactgacctc tgtcaccagg agaaacacac catcatcagt
     4861 aagcctgagg aagaccagga catacaaatg atgaatgaaa accaggtcat caccacctct
     4921 cgcaggaagc cagccactgc tgacccagcc ttacgtccca aaacctgcat acgtgagaag
     4981 gagagctcaa ggcgttggcg gtgctgactg gagcaggagg gagagcctct tcgggctggc
     5041 taggctccat caccagcccc aaacagcacc ggtgtccctc agacttcagg gctggccagc
     5101 tgggacccct cgggctggaa gagcatggag ggacaaggga cttgaatcac agccccagga
     5161 gccataggag tcaggcgaaa gggtcaagaa caggatagct gctccctgcg acacagggct
     5221 ggctgctggg agccaggaac acttggttcc tctctgtgcc tctcctgtga ggttcataag
     5281 agcagggcct ctggcacccg agtcctaggc agcccctgac ccaggcccag aactcagtac
     5341 caagaccatg gagcctgtgc ccctcctcca ctacacagcc ctcctcacta agggcaacag
     5401 ctgctaagag gccactgtgc tgcagctcct ctatccagtg cctctggaga cctgatgggg
     5461 ctagtcctct gttcaagcct gattcaggat gggtcaagga catgtgtcct gctgaggaga
     5521 ggaagtgagc tgtagcgagt gctgaaacct gcccttagcc cctacatctc ctcctatcac
     5581 aacacacgcg cgcgtgcaca cacacaccct ctacctgcaa gtcagagttg ggagggccta
     5641 ggctcagccc tgcttcttct ccctgcagcc cagagcccca tacctgtgtg tacatctatg
     5701 gaacaagctc agatcaggga cctaatcagt ctcccagtag tgggtaattt ctgcttccaa
     5761 atattaatct gttattttcc tggctcgggg cccagtgggg cggtgccatg gtgccgaact
     5821 cagtacattc tgatactacc aagaatcaca aaccctttta agcagcaaca cccagcagct
     5881 gtacagatgt tttaattcag atccagctga caagcagata ggattgcttc tctgatgaga
     5941 atccatcatc tctgtagcct ccagggcctc cccaccccca ccccctggct cctccactta
     6001 ctcccaggag agccatcaaa ccaactctag gcgaatcagg gccactcctt taacaggaat
     6061 ccagcttcta ctccttgggg tgggctcagg tagatttttc tggaacacct aagactgacc
     6121 ttggcgtgct ccctccagat acttggtggg tgtttataag tgtgtattcc atgcactctc
     6181 agagggaagg cgctggcaca agcattaact gtcaaacaaa tgtttatttt ttcttacaaa
     6241 atcaataaaa gatgttatta agaata
//
