LOCUS       NM_001006956            1663 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus katanin catalytic subunit A1 like 1 (Katnal1),
            mRNA.
ACCESSION   NM_001006956 XM_213698
VERSION     NM_001006956.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Cheung,K., Senese,S., Kuang,J., Bui,N., Ongpipattanakul,C.,
            Gholkar,A., Cohn,W., Capri,J., Whitelegge,J.P. and Torres,J.Z.
  TITLE     Proteomic Analysis of the Mammalian Katanin Family of
            Microtubule-severing Enzymes Defines Katanin p80 subunit B-like 1
            (KATNBL1) as a Regulator of Mammalian Katanin Microtubule-severing
  JOURNAL   Mol Cell Proteomics 15 (5), 1658-1669 (2016)
   PUBMED   26929214
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Smith,L.B., Milne,L., Nelson,N., Eddie,S., Brown,P., Atanassova,N.,
            O'Bryan,M.K., O'Donnell,L., Rhodes,D., Wells,S., Napper,D.,
            Nolan,P., Lalanne,Z., Cheeseman,M. and Peters,J.
  TITLE     KATNAL1 regulation of sertoli cell microtubule dynamics is
            essential for spermiogenesis and male fertility
  JOURNAL   PLoS Genet 8 (5), e1002697 (2012)
   PUBMED   22654668
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083673.1.
            
            On Nov 22, 2004 this sequence version replaced XM_213698.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083673.1, SRR8487231.74245.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132272, SAMD00132277
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12p11"
     gene            1..1663
                     /gene="Katnal1"
                     /note="katanin catalytic subunit A1 like 1"
                     /db_xref="GeneID:288449"
                     /db_xref="RGD:1359252"
     exon            1..66
                     /gene="Katnal1"
                     /inference="alignment:Splign:2.1.0"
     exon            67..242
                     /gene="Katnal1"
                     /inference="alignment:Splign:2.1.0"
     CDS             81..1547
                     /gene="Katnal1"
                     /EC_number="5.6.1.1"
                     /note="p60 katanin-like 1; katanin p60 subunit A-like 1;
                     katanin p60 ATPase-containing subunit A-like 1-like"
                     /codon_start=1
                     /product="katanin p60 ATPase-containing subunit A-like 1"
                     /protein_id="NP_001006957.1"
                     /db_xref="GeneID:288449"
                     /db_xref="RGD:1359252"
                     /translation="MNLAEICENAKKGREYALLGNYDSSMVYYQGVIQQIQRHCQSLR
                     DPATKAKWQQVRQELLEEYEQVKSIVSTLESFKMDKPPDFPVSCRDEPFRDPAVWPPP
                     VPAEHRAPPQIRRPNREVRPLRKDMGAGARGLVGRAHQISKSDKAASRDKDYRARGRD
                     DKARKNMQDGASDGEIPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLL
                     REAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLT
                     SKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQM
                     DGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISL
                     REVELDPDIHLEDIAEKTEGYSGADITNICRDASLMAMRRRINGLSPEEIRALSKEEL
                     QMPVTRGDLELALKKIAKSVSAADLEKYEKWMVEFGSA"
     exon            243..403
                     /gene="Katnal1"
                     /inference="alignment:Splign:2.1.0"
     exon            404..566
                     /gene="Katnal1"
                     /inference="alignment:Splign:2.1.0"
     exon            567..694
                     /gene="Katnal1"
                     /inference="alignment:Splign:2.1.0"
     exon            695..800
                     /gene="Katnal1"
                     /inference="alignment:Splign:2.1.0"
     exon            801..959
                     /gene="Katnal1"
                     /inference="alignment:Splign:2.1.0"
     exon            960..1086
                     /gene="Katnal1"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..1221
                     /gene="Katnal1"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1348
                     /gene="Katnal1"
                     /inference="alignment:Splign:2.1.0"
     exon            1349..1634
                     /gene="Katnal1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggctagcgg cgccccgcct cgtccctccc cgctccttga cagccctgac ctgcaagatc
       61 taagtggtgt ctgaaagaag atgaatttgg ccgagatttg tgagaatgcg aagaaaggcc
      121 gggaatatgc acttctgggg aattatgact cgtcaatggt gtattaccag ggagtaatac
      181 agcagatcca gagacactgc cagtcactga gagacccggc caccaaagcg aagtggcagc
      241 aggttcggca ggagctcttg gaagaatatg aacaagttaa gagtatcgtc agcacgttag
      301 aaagctttaa gatggacaag ccccctgact tccctgtgtc ttgtcgagac gaaccgttta
      361 gagatccggc agtatggcca cccccggtcc ctgcagaaca cagagcacca cctcaaatca
      421 ggcgtcccaa ccgagaagtg aggcctctgc ggaaagacat gggggcagga gcccggggcc
      481 tcgtgggccg agcacaccag atatcgaaga gtgataaagc tgcaagtcgg gacaaggact
      541 atagagcaag agggagagat gacaaggcaa ggaaaaatat gcaagatggc gcaagtgatg
      601 gtgagatccc caagttcgat ggcgctgggt atgacaagga tctggtggag gctctggaga
      661 gggacattgt gtccaggaac cctagcattc actgggatga tatagcagat ctggaggaag
      721 ctaagaagtt gctccgggaa gctgttgtcc ttcccatgtg gatgcctgac tttttcaaag
      781 ggattagaag gccatggaag ggtgtgctga tggtcggccc tccagggact ggtaagacta
      841 tgctggctaa agctgttgcc accgaatgtg ggacaacctt tttcaacgtc tcctcttcca
      901 ccctgacgtc taagtaccga ggcgagtctg agaagttggt ccgtctgttg tttgaaatgg
      961 cgaggttcta tgcccctacc acgatcttca tcgacgaaat agactccatc tgcagtcgaa
     1021 gagggacctc cgatgagcat gaggccagcc gcagagtgaa gtccgagctc ctcatccaga
     1081 tggacggagt tggaggagcc ttagaaaacg atgatccatc caaaatggtg atggtcctgg
     1141 cggctacgaa cttcccgtgg gacatcgatg aggctctgcg caggagactg gagaagagga
     1201 tctacatccc tctccccaca gcaaaaggaa gggcggagct cctgaagatc agcctccggg
     1261 aggtggagct ggaccccgac atccacctgg aggacatcgc tgagaagacg gagggctact
     1321 cgggcgctga cataactaac atctgcagag atgcttctct gatggccatg aggcggcgca
     1381 tcaacggcct gagtccagaa gagatcaggg ccctgtccaa ggaggagctg cagatgcctg
     1441 tcaccagagg ggacttggag ctggcgctga agaaaatcgc caagtctgtc tctgcggcag
     1501 acctggagaa gtacgaaaag tggatggttg agttcggatc tgcgtgactg gtcaccgtct
     1561 tccatttccg ggagtttgtt tatgaaatgt gaagaaatac ctgaaattaa aaaaaaaaag
     1621 tctggaattt ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//
