LOCUS       XM_006229199            2178 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus KASH domain containing 5 (Kash5),
            transcript variant X1, mRNA.
ACCESSION   XM_006229199
VERSION     XM_006229199.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006229199.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006229199.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2178
                     /gene="Kash5"
                     /note="KASH domain containing 5; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:308581"
                     /db_xref="RGD:1561972"
     CDS             204..2018
                     /gene="Kash5"
                     /codon_start=1
                     /product="protein KASH5 isoform X1"
                     /protein_id="XP_006229261.1"
                     /db_xref="GeneID:308581"
                     /db_xref="RGD:1561972"
                     /translation="MRELGVQGAIWASCPFPNPLRSGEKLRASTAAVEEHQEWPMDLP
                     EGQASGPTAQMYLWEQPEEANSGPLLSLEEQILNSTFEACDPHKTGTVTVAHLLAYLE
                     AVTGQGPQDVRLQTLARSLDPYGEGAGATVELDTFLVVMRDWIAACQLQGGLELAEET
                     AFGGALASPHLPSACPEAEEPANLESFGGEDPRPEGPATAELLSSLEDLELSNRRLAG
                     ENAKLQRSVETAEEGSARLGEEITALRKQLRSTQQALQVAKALDEELEDLKTLAKSLE
                     EQNRSLMAQARHTEKEQQHLVAEVETLQEENGKLLAERDGVKRRSEELATEKDALKRQ
                     LCECERLICQREAALSERTRHAESLAQTLEEYRTTTQELRQEISNLEEQLSQSQEGPE
                     ELLEGAEAGRVGWIMALPPSLDLEIQALRQGQDAASTGLSSPLCGLWQWEEAEPQEEA
                     ESPSEDPARRQTDFQREPVHALEGSRTPCLRLSRRQEEEEEEESWILADPSSPLGTPH
                     RKLAPRSSPKSCHVVPNMQQALMPVVRELVPVGRSQTQHCLRPRHTPGIRISQHPLVP
                     TPILGLLLLLLVSILLLSQSPPPTWPHLQLYYLQPPPV"
ORIGIN      
        1 ttcaaagact gacaaggggt gaacagggtg tccttcggtt gaactctccc ctgctcggcc
       61 ctattttgcg aagcagaagg gaaggattta gtaccacaga agaaaactgt cgataatatc
      121 gcaccatcac cgctattcca ccaccactag tgcgcatgcg ctcatttctc tgatctaagc
      181 ggtcgtcccg ggaagttcta cgcatgcgcg agctcggggt tcaaggagct atctgggcat
      241 cctgtccctt tcccaaccct cttcgcagtg gagagaagct gagagcttcg acagcagcag
      301 tagaggaaca tcaggagtgg cccatggacc tgccagaggg ccaggctagt ggtcctactg
      361 cacaaatgta cctctgggag cagcctgagg aagcaaattc aggaccactg ctcagcctag
      421 aggaacaaat ccttaactcc acatttgaag cctgtgaccc tcacaagaca ggcactgtga
      481 ctgtggccca cctcctggcc tacctggagg ctgtgacggg acagggacct caggatgtac
      541 gcctccaaac actggcccga agcttggacc cttatgggga gggtgctgga gccactgtgg
      601 aattggacac ctttctggtg gtcatgcggg actggattgc tgcctgtcag ctgcaggggg
      661 gattagagct ggcagaggag accgccttcg ggggagccct ggcttctcca cacctgccat
      721 ctgcatgccc agaagctgag gagccagcca acttagagag ctttggagga gaagacccca
      781 ggcctgaggg gccagccaca gccgagctgc tgagcagcct ggaggaccta gagctaagca
      841 accggcgcct tgctggtgag aacgccaagc tgcagcgcag tgtggagact gctgaggagg
      901 gctccgcgcg cctcggggag gagatcacag ccctgcgcaa gcagctgcga agtacccagc
      961 aggccctgca ggtggccaaa gctttggatg aggagctaga agacctgaag actttggcca
     1021 agagcctgga ggagcagaat cgcagtctga tggctcaggc ccggcacaca gagaaggagc
     1081 agcagcacct ggtggctgag gtggagacgc tacaggagga gaatgggaag ctactagcag
     1141 agcgagatgg agtgaagaga cggagtgagg agttggccac agagaaagat gctttgaagc
     1201 ggcagctctg tgagtgtgaa cgactcattt gccagcgtga agcagccctc tcagagcgta
     1261 cccgccatgc agagagtctg gcccagacct tggaggagta ccgaaccacc actcaggagc
     1321 taaggcaaga aatttcaaac ctggaggagc aactgagtca gagccaggaa ggcccagagg
     1381 agctgctgga aggggctgag gcaggaagag taggctggat catggccctg cccccatcac
     1441 tggacttgga gatccaggct ctccggcagg ggcaggatgc agccagtact ggcctctcca
     1501 gtcctctgtg tggactgtgg cagtgggaag aggctgaacc acaggaggag gccgagtctc
     1561 cctctgagga ccctgctagg cgacagacag acttccagag agagccagtg catgctctag
     1621 aaggaagcag aactccatgc ttgaggttgt ccagaagaca ggaagaggag gaagaagagg
     1681 agagctggat cctggctgac ccctccagcc ctctgggaac ccctcaccgg aaactcgccc
     1741 caagaagctc tcctaagagc tgccatgttg tgccaaacat gcaacaagcc ctcatgccgg
     1801 tggtgagaga gctggtacca gtcggacgat cacagaccca gcactgtctg cgtccccggc
     1861 acaccccagg gatcagaatc agccagcacc cactggtacc cacacccatt ctgggtctgc
     1921 tgctgctgct gctggtctcc attctgctgc tcagccagtc cccaccgccc acctggccgc
     1981 acctgcagct ctactaccta cagccgccac cagtgtgagg cccttctcag tagacagccc
     2041 acccatttcc accactgtac tgcctgctgt cactgctgtc agcactgggc ccacatccct
     2101 aagttgtgtt atgtgaccat ggcctctcct ggcttctcct gtttcttaac aatagcaaat
     2161 ctcgcagtca tgacttga
//
