LOCUS       NM_001104612            3387 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus Jrk helix-turn-helix protein (Jrk), mRNA.
ACCESSION   NM_001104612 XM_001073499 XM_235416
VERSION     NM_001104612.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3387)
  AUTHORS   Benchabane,H., Xin,N., Tian,A., Hafler,B.P., Nguyen,K., Ahmed,A.
            and Ahmed,Y.
  TITLE     Jerky/Earthbound facilitates cell-specific Wnt/Wingless signalling
            by modulating beta-catenin-TCF activity
  JOURNAL   EMBO J 30 (8), 1444-1458 (2011)
   PUBMED   21399610
REFERENCE   2  (bases 1 to 3387)
  AUTHORS   Liu,W., Seto,J., Donovan,G. and Toth,M.
  TITLE     Jerky, a protein deficient in a mouse epilepsy model, is associated
            with translationally inactive mRNA in neurons
  JOURNAL   J Neurosci 22 (1), 176-182 (2002)
   PUBMED   11756500
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jan 1, 2009 this sequence version replaced NM_001104612.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.483083.1,
                                           SRR22582416.375536.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                JAXUCZ010000007.1  108484254-108484329 c
            77-3387             JAXUCZ010000007.1  108479646-108482956 c
FEATURES             Location/Qualifiers
     source          1..3387
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..3387
                     /gene="Jrk"
                     /note="Jrk helix-turn-helix protein"
                     /db_xref="GeneID:315073"
                     /db_xref="RGD:1306316"
     exon            1..76
                     /gene="Jrk"
                     /inference="alignment:Splign:2.1.0"
     exon            77..3387
                     /gene="Jrk"
                     /inference="alignment:Splign:2.1.0"
     CDS             511..2184
                     /gene="Jrk"
                     /codon_start=1
                     /product="jerky protein homolog"
                     /protein_id="NP_001098082.1"
                     /db_xref="GeneID:315073"
                     /db_xref="RGD:1306316"
                     /translation="MASKQAAAKGKGEKRKRVVLTLKEKIDICSRLERGESRKALMQE
                     YNVGMSTLYDIKAHKAQLLSFFASSDSRQALEQRRTLHTPKLEHLDRVLYEWFLVKRA
                     EGIPVSGPMLIEKAKDFYKQMRLTEPCVFSGGWLWRFKARHGIKKLDASSEKQVADPQ
                     AAEQFCGFFRSLAAEHGLSPEQVYSADETGLVWRCLPSSTPDDGTVPRFKQGKDRLTV
                     LMCANATGSHRIKPLAIGKGGGPRAFRGIQHLPVAYKAQGNAWVDKEIFSDWFHHIFV
                     PSVREHFRTIGLPEDSKAILLLDHSRAHPQESELVSENVFTIFLPSSVTSLLQPTEQG
                     IRRAFMRLFINPPVALQGFPTRHNVNDAIVNVACAWNAVPSQVFRRAWRKLWPTVPFT
                     EGSSSGEEAECCSIKPHKTFAHILELVKEGPSCSGSRLQDSRVEERLVSGRDMDEAPA
                     VVAPSQTTGCAEKSEKDAGEDEETVWEQAATSFEALVRFAERQPCFSVQEVGQLQALH
                     TVFRRQQQLRQPRVALRAVIKLEALQEHPGVCMATAHSALPCSSTAGDN"
ORIGIN      
        1 aggccgcgag gagcggaccg gtggagagct gcgtggctgg catttccggc cggtaccggc
       61 ggtacagggt ccacagttcc tgaagtatac ggatgagaca acgtaacaac gtgaatcctc
      121 atgagaagta ttcccagctc agaccgtcaa atcttcgtta acctgaaacc tggacaagtt
      181 gaaggggaaa agtgtcccat tgtgctatct gtgtggagac ccaaagctcc cggtgcaccc
      241 cagcagtcca gggtagcttg ccctgccacc tcccctgaag agaacagcag ctgaccttac
      301 tactaggatc tgaggcctaa gtgtgctgga gccccgatac taaagggaaa ctgaggcaag
      361 agacagaggg tagagccaag aatgaacttg tcttgagcct gggatcagtt ccgtcggcag
      421 gcagagaaga cagggagaga ctgtggctcc aagagccaga aagaaacagc caagtgagga
      481 caggcgcagc ctagcttggg ctccctcctc atggcctcca agcaggctgc tgccaagggc
      541 aagggggaga agcggaagcg agtggtgctg accctgaagg aaaagattga catctgcagt
      601 cggctggagc gcggggagag taggaaggca ctgatgcagg agtataacgt gggcatgtcc
      661 actctgtacg acatcaaagc ccacaaggcc cagctactca gcttctttgc cagctcagac
      721 tctcgccagg cactggagca gcggcgtacc ctgcacaccc caaagctgga gcacctggac
      781 cgggtactct atgagtggtt cctggtgaag cgtgctgagg gcatccccgt atccggccct
      841 atgctcatcg aaaaggccaa ggacttctat aagcagatgc ggctgacaga gccctgtgtg
      901 ttctctggag ggtggctttg gcgcttcaag gccaggcacg gcattaaaaa gctcgacgcc
      961 tctagtgaga agcaggtggc cgacccccaa gccgctgagc agttctgcgg ctttttcagg
     1021 agcctggcag ctgagcatgg gctgtctcct gagcaggtgt acagcgctga tgagactggt
     1081 ctggtctggc gctgcttgcc aagttctacc ccggatgatg ggactgtgcc ccgcttcaaa
     1141 cagggcaagg acaggctgac tgtcttgatg tgcgccaatg ccacaggctc ccacagaatc
     1201 aagcccttgg ccatcgggaa gggtggcggc cccagagcct tcagaggcat ccagcacctg
     1261 cctgttgctt acaaggccca gggtaatgcc tgggtagaca aggagatttt ctcagactgg
     1321 ttccatcata tttttgtccc ctcagtgaga gagcactttc gaaccatagg cttaccagaa
     1381 gacagcaagg ccattctctt gctggaccat tcccgggccc acccacagga gtcagagctg
     1441 gtgtcagaga atgtcttcac tatcttcctg ccctccagtg tgacctccct actgcagccc
     1501 acagagcaag gcattcgaag agccttcatg aggctcttca ttaaccctcc tgtggcctta
     1561 cagggcttcc ccacccgcca caacgtgaat gatgccatag tcaatgtggc ctgcgcctgg
     1621 aatgctgtgc ctagccaggt cttcaggcgg gcctggagga aactgtggcc cactgtccca
     1681 ttcactgaag gttcctcctc tggggaggaa gcagagtgct gtagcatcaa gcctcacaag
     1741 actttcgcac acatccttga gcttgtaaaa gaagggccct cttgttctgg cagcaggctt
     1801 caggacagca gggttgaaga gcggcttgtg tcagggaggg acatggatga ggcccctgct
     1861 gttgtggcac catcccagac cactgggtgt gcagaaaagt cagagaaaga tgctggtgag
     1921 gatgaggaga cagtttggga gcaggcagcc acatccttcg aggcactcgt gcgctttgca
     1981 gagcggcagc catgtttcag tgtgcaagag gtggggcagc tgcaggcgct gcacacagta
     2041 ttcaggagac agcagcagct gaggcagcct cgtgtggctc tcagggctgt gatcaaactt
     2101 gaggcccttc aggagcaccc tggtgtgtgc atggccacag cccactctgc cttgccttgc
     2161 tcatctacag caggtgacaa ctagagtacc ttgcttatac ctgctgaccc tctgcagctc
     2221 tgctctgtgg catctgcagc tcgggggctg acactgcctg ctagggagga gagcatactg
     2281 agaggagatg agcgggagag caagcacaga cacaagcccc aggagcatag ctcttgtcag
     2341 ggtcactctg tttacagagg gctgcatatg ttctggctag tggtttactg tacctcctag
     2401 cacagataat atatcatttg aatagcagga gacctggtgc cctttttctc agcactctga
     2461 agcctcccct agctgcagct gggtccattg gggcagttct gtgtctggtg ttggaagact
     2521 gagccacatt atcaggttga agtgccttga ggggtgcacc tccagccttc aggaggctcg
     2581 ctctcctcaa tgggtggacc ccaagcccag tcttgagggc attgtcttca gcgtctgacc
     2641 tctggtcaca tccctcactg ctagttgcaa aggtaccatg ctgtcctctt ggtttgcacc
     2701 cacctcagcc atggacaaat tcaagcaagc tctgtagtgt ccttgtcaga gcaggtccta
     2761 cccccagggt ccaggtctca cagagacact gtgttctagt taaagcattg ctcagaggcc
     2821 aacatgtacc cagaagtctg tgcttcccaa aatttcaaag taacagcctt tatgtgaatg
     2881 gtttgcaaag tcacagaaca acactcagtg gcttggagct cacggggtgg gggtgagggg
     2941 aggcggtagg tgggttagca ctactccagt ggaatatgtg tctgcactgg ttagttctat
     3001 ggagaccagc tgtcggagga cgtgactgtt ttcctgacat tgtagctttg tagctgagga
     3061 gtagcactgt ggctgctgtg cctgtgactc ccattgccct tgtctgcagc cgttagctct
     3121 gttcgttcac cgtggctttg tctttgacct tcttccctct gcgattcctg tggctgtatt
     3181 accagttttc attccagtgg tcgacggctg ctacaccaag agacttttgt ccgaacctct
     3241 gagagccaga ggggtttggg gaatgttggt ttgtgtttct gtatctgtct aaactgagga
     3301 tggtcattgc ggacagctgt agttgtgggc gagtgttgtc ttgcttttcc tgtatgtgtg
     3361 aatattataa ctaggttgtt tttagaa
//
