LOCUS       NM_001107437            3606 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus junctophilin 3 (Jph3), mRNA.
ACCESSION   NM_001107437 XM_001079187 XM_226549
VERSION     NM_001107437.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3606)
  AUTHORS   Maret S, Dorsaz S, Gurcel L, Pradervand S, Petit B, Pfister C,
            Hagenbuchle O, O'Hara BF, Franken P and Tafti M.
  TITLE     Homer1a is a core brain molecular correlate of sleep loss
  JOURNAL   Proc Natl Acad Sci U S A 104 (50), 20090-20095 (2007)
   PUBMED   18077435
REFERENCE   2  (bases 1 to 3606)
  AUTHORS   Kakizawa S, Kishimoto Y, Hashimoto K, Miyazaki T, Furutani K,
            Shimizu H, Fukaya M, Nishi M, Sakagami H, Ikeda A, Kondo H, Kano M,
            Watanabe M, Iino M and Takeshima H.
  TITLE     Junctophilin-mediated channel crosstalk essential for cerebellar
            synaptic plasticity
  JOURNAL   EMBO J 26 (7), 1924-1933 (2007)
   PUBMED   17347645
REFERENCE   3  (bases 1 to 3606)
  AUTHORS   Moriguchi S, Nishi M, Komazaki S, Sakagami H, Miyazaki T, Masumiya
            H, Saito SY, Watanabe M, Kondo H, Yawo H, Fukunaga K and Takeshima
            H.
  TITLE     Functional uncoupling between Ca2+ release and
            afterhyperpolarization in mutant hippocampal neurons lacking
            junctophilins
  JOURNAL   Proc Natl Acad Sci U S A 103 (28), 10811-10816 (2006)
   PUBMED   16809425
REFERENCE   4  (bases 1 to 3606)
  AUTHORS   Nishi M, Hashimoto K, Kuriyama K, Komazaki S, Kano M, Shibata S and
            Takeshima H.
  TITLE     Motor discoordination in mutant mice lacking junctophilin type 3
  JOURNAL   Biochem Biophys Res Commun 292 (2), 318-324 (2002)
   PUBMED   11906164
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473972.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_226549.4, XM_001079187.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132262,
                              SAMD00132263 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3606
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..3606
                     /gene="Jph3"
                     /note="junctophilin 3"
                     /db_xref="GeneID:307916"
                     /db_xref="RGD:1308416"
     CDS             1..2250
                     /gene="Jph3"
                     /codon_start=1
                     /product="junctophilin-3"
                     /protein_id="NP_001100907.1"
                     /db_xref="GeneID:307916"
                     /db_xref="RGD:1308416"
                     /translation="MSSGGRFNFDDGGSYCGGWEDGKAHGHGVCTGPKGQGEYTGSWS
                     HGFEVLGVYTWPSGNTYQGTWAQGKRHGIGLESKGKWVYKGEWTHGFKGRYGVRECTG
                     NGAKYEGTWSNGLQDGYGTETYSDGGTYQGQWVGGMRQGYGVRQSVPYGMAAVIRSPL
                     RTSINSLRSEHTNGAALHPDASPAVAGSPAVSRGGFVLVAHSDSEILKSKKKGLFRRS
                     LLSGLKLRKSESKSSLASQRSKQSSFRSEAGMSTVSSTASDIHSTISLGEAEAELAVI
                     EDDIDATTTETYVGEWKNDKRSGFGVSQRSDGLKYEGEWVSNRRHGYGCMTFPDGTKE
                     EGKYKQNVLVSGKRKNLIPLRASKIREKVDRAVEAAERAATIAKQKAEIAASRTSHSR
                     AKAEAALTAAQKAQEEARIARITAKEFSPSFQHRENGLEYQRPKHQMSCDDIEVLSTG
                     TPLQQESPELYRKGTTPSDLTPDDSPLQSFPASPTATPPPAPASRNKMAHFSRQVSVD
                     EERSGDIQMLLEGRGGDYARNSWGEEKAGASRGVRSGALRSGQPTEDFRTRGSGHKQP
                     GNPKPRERRTESPTTFSWTSHHRAGNPCSGGPKLLQPDEEQLSNYKLEMKPLLRMDAC
                     PQDTHPQRRRHSRGAGGDRRSEDRGFGLQRLRSKSQNKENLRPASSAEPTVQKLESLR
                     LGDRPEPRLLRWDLTFSPPQKSLPVALESDEETGDELKSSTGSAPILVVMVILLNIGV
                     AILFINFFI"
     exon            1..382
                     /gene="Jph3"
                     /inference="alignment:Splign:2.1.0"
     exon            383..1160
                     /gene="Jph3"
                     /inference="alignment:Splign:2.1.0"
     exon            1161..1285
                     /gene="Jph3"
                     /inference="alignment:Splign:2.1.0"
     exon            1286..2169
                     /gene="Jph3"
                     /inference="alignment:Splign:2.1.0"
     exon            2170..3606
                     /gene="Jph3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtccagtg ggggtaggtt taattttgac gatggagggt cctactgcgg aggctgggag
       61 gacggcaagg cgcacggcca tggcgtctgc accggcccga agggccaggg cgaatacacc
      121 ggctcgtgga gccacggctt tgaggtgctg ggcgtctaca cctggccaag cggcaacacg
      181 taccaaggca cctgggcgca gggcaagcgc cacggcatcg gcctggagag caaggggaag
      241 tgggtgtaca agggcgagtg gacgcacgga tttaaggggc gctacggggt gcgggagtgc
      301 acgggcaacg gagccaaata cgaagggacc tggagcaacg gactgcagga tggctacggc
      361 acggagacct actcggatgg agggacgtac cagggccaat gggttggtgg catgcgccag
      421 ggctatggtg tacgacagag tgtcccttac ggcatggctg cggtcatccg ctcgcccctg
      481 aggacgtcca tcaactccct ccgcagcgag cacacgaacg gtgcggcgct gcacccggac
      541 gcctccccgg cagtggccgg cagcccggct gtgtcccgtg gtggcttcgt gctggtggcc
      601 cacagtgact cggagatcct gaagagcaag aagaagggac tgttccggcg ctcgctgttg
      661 agcggcctga agctgcgcaa gtctgagtcc aagagcagcc tggctagcca gcgcagcaag
      721 cagagctcct tccgcagcga ggcggggatg agcaccgtga gttccacggc cagcgacatc
      781 cactccacca tcagcctggg tgaggccgag gctgagctgg ctgtcattga ggacgacatc
      841 gacgccacca ccactgagac ctatgtgggc gagtggaaaa acgacaagcg ctcgggcttt
      901 ggcgtgagcc agcgctcgga tgggctcaag tatgagggtg agtgggtcag caaccgccgg
      961 catgggtacg gatgtatgac cttccccgat ggcaccaagg aggaggggaa gtacaagcag
     1021 aacgtgctcg tgagcggcaa gcgcaagaac ctcatcccac tgcgtgccag caagatccgg
     1081 gagaaggtgg accgggccgt ggaggcagcc gagagggcgg ccaccatcgc caagcagaaa
     1141 gccgagatcg ctgcgtccag gacctcccac tcacgggcca aggccgaggc agcactcact
     1201 gcggctcaaa aagcccagga agaagcacgg atcgccagga tcactgccaa agagttctcg
     1261 ccttccttcc agcacaggga aaacgggctt gagtaccaga ggccaaagca ccagatgtcc
     1321 tgtgatgaca tcgaggtgct ctccaccggg acacccctgc agcaggagag ccccgagctg
     1381 taccgcaagg gcaccacccc ttctgatctg acccccgatg acagtcccct gcaaagcttt
     1441 cctgccagcc ccacggctac ccctccgcca gctcctgcct ccaggaacaa gatggcccac
     1501 ttctccaggc aggtctcggt ggatgaggag cgaagcgggg acatccagat gctccttgag
     1561 ggccgaggag gggactatgc ccgcaacagc tggggcgagg agaaggctgg ggcctctagg
     1621 ggtgtgcgca gtggtgccct acgcagcggt cagcccactg aggacttccg cacccggggt
     1681 tcaggccaca agcagcctgg gaaccccaag ccccgggagc ggcggacgga gtcccccacc
     1741 acgttctcgt ggacttcaca ccaccgggca ggcaatccct gctctggggg ccccaagctg
     1801 ctacagcccg atgaggaaca gctgagtaac tacaagctgg agatgaagcc cttactaagg
     1861 atggatgcct gtccacagga tacgcaccca cagagacggc gtcacagtcg gggtgctggg
     1921 ggagaccggc gctctgagga ccggggcttc gggctacaga gactgaggtc caagtcccag
     1981 aacaaggaga acctcaggcc ggcctcctct gcagaaccca cggtgcagaa actagagagc
     2041 ctgaggctgg gggaccggcc cgagccccgt ctgctgcgtt gggacctgac cttctcccca
     2101 ccccagaagt ccctgcctgt tgcactagag tctgacgagg agactgggga tgagctcaag
     2161 tccagcacgg gctcagctcc catcttggtc gtcatggtga tcctgctcaa cattggagtc
     2221 gccattttgt ttattaactt tttcatctga caagattgtt gtgaccacgg aagcaatgat
     2281 gtacaaaagg gacgataaat gcaaaacaag aaggggaacc ctgactcgga cagccccaca
     2341 actcctgtcc ttccacagaa gaacaacatg attgggtagc actcacagtt tgcctttttt
     2401 tctgggtaat gtttttttgg attttagcca aaattctttg cttgtgtaac acgatgctgt
     2461 gtggcatggt aggaggaggc cggcatgcca cccctccagc ttggtgtgaa cgggtcctgg
     2521 caaaccagcg gccaaaagat cgggactttc atgtttcctg ccgggtgtgg aaggtggcaa
     2581 gtggaaggtg gcgccttgac cagggtgccc ggcgagccgg gagaggggga gggcagctag
     2641 ggagtgcagc tatgcaaggc aagtagctgg gagtgtgggc ccaggcccag ggacagggac
     2701 agggtgtcct ggcctctgtc tccatgagtc tgtgctgcat acctgcggag ggagagggaa
     2761 gcccctgctc ttcttcccag aacagaccat gatccctctt ctcggcactg ccccaaggct
     2821 ctcctaagga ggccgcctcc ccacactgag tcttaaggca aagtctgttc cttgctgtcc
     2881 tccgctcact cattgttggc cctgtccagc catcctccct ccagacccag ggaggccatg
     2941 ctgcagacgt ccagggctga ccccgacctg gccaggcaca tctgagccct gatgccaagg
     3001 gggctatggc ccacatgccc cggacagcct gacagcacgc ctgggctgag catgtgacgt
     3061 tttgcaccta gtatgcagga tgtatattca ggcttccgtg tccctggcag tgacgcccca
     3121 tggaggacgt cacctctcac tgacctccac ggggtctcac atctttgcac tgtgcctgcc
     3181 tcgacttccc ctaacagata tgcatattcc ctccagatgc ctcagagcta ctccagagag
     3241 tctggtccgg gacaggaatg tggttgaagc cagtggcttg aatgtcctgg agactgttgc
     3301 atacccagca ctccccggat gtacaatgta acttgtttca gtcaaacaac aggttcctca
     3361 tgtctctgcc ttctctacca gggttgttcc ctcatccaaa caaatgaaca agggatgcca
     3421 gctcgcctgg cacccgtggc tccgtcagtc ttcttgggtg cagcccgttt gtcttatgga
     3481 ctttgccttg ctttgctcgt gttcagctgt cctctgctac ctttcgagca gatttcttta
     3541 ctacagtgca ctggattgct atatttttaa ccagaaataa actacagatt agagcatgtt
     3601 ccagcg
//
