LOCUS       NM_001114656            1335 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus jumonji domain containing 7 (Jmjd7), mRNA.
ACCESSION   NM_001114656
VERSION     NM_001114656.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1335)
  AUTHORS   Markolovic,S., Zhuang,Q., Wilkins,S.E., Eaton,C.D., Abboud,M.I.,
            Katz,M.J., McNeil,H.E., Lesniak,R.K., Hall,C., Struwe,W.B.,
            Konietzny,R., Davis,S., Yang,M., Ge,W., Benesch,J.L.P.,
            Kessler,B.M., Ratcliffe,P.J., Cockman,M.E., Fischer,R., Wappner,P.,
            Chowdhury,R., Coleman,M.L. and Schofield,C.J.
  TITLE     The Jumonji-C oxygenase JMJD7 catalyzes (3S)-lysyl hydroxylation of
            TRAFAC GTPases
  JOURNAL   Nat Chem Biol 14 (7), 688-695 (2018)
   PUBMED   29915238
  REMARK    Erratum:[Nat Chem Biol. 2018 Jun 27;:. PMID: 29950663]
REFERENCE   2  (bases 1 to 1335)
  AUTHORS   Liu,H., Wang,C., Lee,S., Deng,Y., Wither,M., Oh,S., Ning,F.,
            Dege,C., Zhang,Q., Liu,X., Johnson,A.M., Zang,J., Chen,Z.,
            Janknecht,R., Hansen,K., Marrack,P., Li,C.Y., Kappler,J.W.,
            Hagman,J. and Zhang,G.
  TITLE     Clipping of arginine-methylated histone tails by JMJD5 and JMJD7
  JOURNAL   Proc Natl Acad Sci U S A 114 (37), E7717-E7726 (2017)
   PUBMED   28847961
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.10459.1,
                                           SRR26360172.505759.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                JAXUCZ010000003.1  127452261-127452331
            72-225              JAXUCZ010000003.1  127455788-127455941
            226-479             JAXUCZ010000003.1  127456018-127456271
            480-536             JAXUCZ010000003.1  127456568-127456624
            537-632             JAXUCZ010000003.1  127457052-127457147
            633-709             JAXUCZ010000003.1  127457320-127457396
            710-869             JAXUCZ010000003.1  127457586-127457745
            870-1335            JAXUCZ010000003.1  127457857-127458322
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..1335
                     /gene="Jmjd7"
                     /note="jumonji domain containing 7"
                     /db_xref="GeneID:100137086"
                     /db_xref="RGD:2290039"
     exon            1..71
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..958
                     /gene="Jmjd7"
                     /EC_number="3.1.1.4"
                     /note="jmjC domain-containing protein 7"
                     /codon_start=1
                     /product="bifunctional peptidase and (3S)-lysyl
                     hydroxylase JMJD7"
                     /protein_id="NP_001108128.1"
                     /db_xref="GeneID:100137086"
                     /db_xref="RGD:2290039"
                     /translation="MAEAALDAVRRALQEFPAAARDLNVPRVVPYLDEPPSPLCFYRD
                     WVCPNRPCIIRNALQHWPALQKWSFSYLRATVGSTEVSVAVTPDGYADAVRGDRFVMP
                     AERRLPVSHVLDVLEGQAQHPGVLYVQKQCSNLPTELPQLLSDIESHVPWASESLGKM
                     PDAVNFWLGDAAAVTSLHKDHYENLYCVVSGEKHFLLHPPSDRPFIPYNLYTPATYQL
                     TEEGTFRVVDEEAMEKVPWIPLDPLAPDLARYPSYSQARALHCTVRAGELLYLPALWF
                     HHVQQSHGCIAVNFWYDMEYDLKYSYFQLMDSLTRAAGLD"
     exon            72..225
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     exon            226..479
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     exon            480..536
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     exon            537..632
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     exon            633..709
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     exon            710..869
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
     exon            870..1335
                     /gene="Jmjd7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcgtgatg gcggaggcgg ctctggacgc tgtacggagg gcgttacaag agttcccggc
       61 ggctgctcgc gacctcaatg tacctcgagt tgtgccctat ctggatgagc ctccaagtcc
      121 gctctgcttc taccgggatt gggtgtgccc caataggccc tgtattatcc gaaatgccct
      181 gcagcactgg ccagccctcc agaagtggtc cttctcctac ttaagagcca ccgtgggctc
      241 cacagaggtg agtgtggctg tgactccaga tggttatgcg gatgccgtgc gaggggaccg
      301 ctttgtgatg cccgctgaac gccgcctgcc cgtaagccat gtgttagatg tgttggaggg
      361 tcaggcccag caccccggag tcctctatgt acagaaacag tgttccaacc tgcccactga
      421 gctgccccag cttctgtctg acattgagtc ccatgtgccc tgggcctctg agtcactggg
      481 aaagatgcct gatgctgtga acttctggct gggtgacgca gctgcagtga catccttgca
      541 caaggaccac tatgagaatc tgtactgtgt agtctctggc gagaaacact tcttgctgca
      601 tccacccagt gaccggccct tcatccctta caatctctac acaccagcaa cctaccagct
      661 gaccgaagag ggcaccttta gggtggtgga cgaggaagcc atggagaagg tgccctggat
      721 cccactggac cccctggctc cagacctggc ccggtacccc agttatagtc aggcacgggc
      781 ccttcactgc acagtgcggg ctggcgagct gctctatctg ccagctctgt ggttccacca
      841 tgtacagcag tcccacggct gtattgctgt gaatttctgg tatgacatgg agtatgacct
      901 caagtacagt tactttcagc tgatggactc cctcactagg gctgcaggcc ttgactgatg
      961 gcccctcaca gacactgcaa aggacagggg gactgatggc ggtatttgat tagaggcagc
     1021 ctggagttga gtatgtcctg gctgctgccc aggttcctgc ctgtgttgga tgtaggacta
     1081 agttggatat gttggaggac caggaaatgc caggcaaatc tgggtgaaca tgcccaggaa
     1141 cttgccacac aggtgacaag gaagcacgga tcaggtacag caatgcctct cacagtgcta
     1201 tgaccttggg tgagtcactg catgttagca tcagtccctt gcctgtaaag tagagataat
     1261 aatggctctg gctcccagag ctgtgggact agacgtgggc caacatagaa gaagcggtca
     1321 ataaaaggtg acact
//
