LOCUS       NM_001105784            4281 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus jumonji domain containing 4 (Jmjd4), mRNA.
ACCESSION   NM_001105784 XM_001077074 XM_220561
VERSION     NM_001105784.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4281)
  AUTHORS   Feng T, Yamamoto A, Wilkins SE, Sokolova E, Yates LA, Munzel M,
            Singh P, Hopkinson RJ, Fischer R, Cockman ME, Shelley J, Trudgian
            DC, Schodel J, McCullagh JS, Ge W, Kessler BM, Gilbert RJ, Frolova
            LY, Alkalaeva E, Ratcliffe PJ, Schofield CJ and Coleman ML.
  TITLE     Optimal translational termination requires C4 lysyl hydroxylation
            of eRF1
  JOURNAL   Mol Cell 53 (4), 645-654 (2014)
   PUBMED   24486019
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000220.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001105784.3.
            
            On Oct 25, 2022 this sequence version replaced NM_001105784.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132262,
                              SAMD00132264 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-393               JACYVU010000220.1  1059386-1059778
            394-559             JACYVU010000220.1  1059927-1060092
            560-694             JACYVU010000220.1  1062733-1062867
            695-962             JACYVU010000220.1  1063015-1063282
            963-1109            JACYVU010000220.1  1064071-1064217
            1110-4281           JACYVU010000220.1  1064441-1067612
FEATURES             Location/Qualifiers
     source          1..4281
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..4281
                     /gene="Jmjd4"
                     /gene_synonym="RGD1307186"
                     /note="jumonji domain containing 4"
                     /db_xref="GeneID:287359"
                     /db_xref="RGD:1307186"
     exon            1..393
                     /gene="Jmjd4"
                     /gene_synonym="RGD1307186"
                     /inference="alignment:Splign:2.1.0"
     CDS             129..1409
                     /gene="Jmjd4"
                     /gene_synonym="RGD1307186"
                     /note="jmjC domain-containing protein 4"
                     /codon_start=1
                     /product="2-oxoglutarate and iron-dependent oxygenase
                     JMJD4"
                     /protein_id="NP_001099254.1"
                     /db_xref="GeneID:287359"
                     /db_xref="RGD:1307186"
                     /translation="MDRETRTFAERYYRGLRDRVPSGGGPRPSSVNFIQAPDAFSYAD
                     FVKGFLLPNLPCVFSSAFTEGWGSRRRWVTSEGKPDFEYLLQKYGDAVVPVANCGVRE
                     YNSNPKEHMPFRDYISYWKEYIQGGYSSPRGCLYLKDWHLCRDSLVDDLEDIFTLPVY
                     FSSDWLNEFWDVLNVDDYRFVYAGPKGTWSPFHADIFRSFSWSVNICGKKKWLFFPPG
                     QEEALRDCRGNLPYDVTSTELLDTHLYPRIQQDSLPIEVIQEPGEMVFVPSGWHHQVY
                     NLEDTISINHNWVNGCNLANMWHFLQQELQAVQHEVGEWKDSMPDWHHHCQVIMKSCT
                     GINYEEFYHFLKVIAEKRLLVLRQGLKGDSGDNKSLGLGLQQAAFDVGRLADVLASVV
                     VNPDFQRVDTSVFSPQPEELLQQLEDSVTAAEAL"
     exon            394..559
                     /gene="Jmjd4"
                     /gene_synonym="RGD1307186"
                     /inference="alignment:Splign:2.1.0"
     exon            560..694
                     /gene="Jmjd4"
                     /gene_synonym="RGD1307186"
                     /inference="alignment:Splign:2.1.0"
     exon            695..962
                     /gene="Jmjd4"
                     /gene_synonym="RGD1307186"
                     /inference="alignment:Splign:2.1.0"
     exon            963..1109
                     /gene="Jmjd4"
                     /gene_synonym="RGD1307186"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..4281
                     /gene="Jmjd4"
                     /gene_synonym="RGD1307186"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttttgttccg ggctccttct cagtggtttc tgctgtgaac tgcttttagg ggctttctca
       61 gcctctggtc cccatttgga gggtagtgag aagtgggact gggcctccgg ggtcaggttc
      121 cccggtggat ggatcgggag acacgcacct ttgccgagcg gtactaccgg ggtctccggg
      181 accgagtccc tagcggcggc ggtcccagac ccagcagcgt gaacttcatt caagcgccgg
      241 acgccttctc ctatgctgac ttcgtgaagg gcttcctgct acctaacctg ccctgcgtgt
      301 tttccagcgc cttcactgaa ggctggggta gcaggcggcg ctgggtaaca tcggagggaa
      361 agcctgactt cgaatatctg ctgcagaagt atggagacgc ggttgtaccg gttgctaact
      421 gtggagtgcg ggaatacaat tcaaacccca aggagcatat gcccttccgt gactatatca
      481 gttactggaa ggagtacatc caaggaggct actcctctcc aaggggctgc ctctacctca
      541 aggactggca tctgtgcaga gactccttgg tggatgactt ggaagatata ttcaccctgc
      601 ctgtgtactt ctcatcagat tggctgaatg agttctggga cgtcctcaat gtggatgact
      661 accgttttgt ctatgcgggc cccaagggca cctggtctcc cttccatgca gacatcttcc
      721 gctccttcag ctggtcagtc aacatctgtg ggaagaagaa atggttgttc ttcccgccag
      781 ggcaggagga agcccttcgg gactgccgtg gtaacctgcc ctatgatgtg acttccaccg
      841 agctcctgga cacccacctg tatcccagga tccagcagga cagccttccc attgaagtca
      901 tacaggagcc tggcgagatg gtgtttgtgc ccagcgggtg gcaccatcaa gtgtacaacc
      961 tggaagacac catctctatc aaccacaact gggtcaatgg ctgcaacctg gcaaacatgt
     1021 ggcacttcct gcagcaggag ctccaggccg tgcagcatga ggttggagaa tggaaggact
     1081 ccatgcctga ctggcaccac cactgccagg tcatcatgaa gtcctgcaca gggatcaact
     1141 atgaagaatt ttaccatttc ctcaaggtca tcgctgagaa gaggcttctt gtcctgagac
     1201 aaggactgaa gggggattca ggggacaaca agagcctagg cctgggccta cagcaggctg
     1261 catttgatgt tggccgcctc gcagatgtgc tagcctctgt agttgtgaat cctgactttc
     1321 agagagtgga caccagcgtg ttctcaccac agccagagga gttgcttcag cagctggagg
     1381 actcagtgac tgctgcagaa gccctttagt atgctacaga tcaagatgca ggaagaattc
     1441 tggaaagcag ctcttgcccc agggcccttc tggaaatgca ggataccttt ccttgaggcc
     1501 taggatgtgc cccaagcctg tgccagtgca gttcttgcag ggtggacctt gaggaaagtc
     1561 cagccaaact gggaatttaa ctcttggagg ccagaaagat attcacctat ctgacctcta
     1621 acaagcctgc ctagaatgtg aattgagtag tggtcatgaa gccaggtttc cttggagcct
     1681 cccagcctct tagttaccct aggattcctg agtgatggac agctttggat gcctaccttg
     1741 gaggtactcc tgtgtagcct gggagattac atatatatat atatatatat atatatatat
     1801 atatatatat atatatatat tttatgtatg cagttgccct ccgagcctct agttctgtcc
     1861 taggagtgcc agactccaac tgaactagga ttaaccaggg tatgataagc tatacgagtt
     1921 cttagggtaa gtgttgtttg ccagtggctg gaggcacagt gctaagtggc caaaaagcct
     1981 aggtactggt ccatccaagt ccccaggatg gagatgatag tgcagaacta gggagcagta
     2041 gcattcttgc ccacagcagt cctgcaaggc ctagcctcct gtgctagccc atctgcagct
     2101 gtatagggag ccctgtagag agggcagata tgcagtctta agctgcgctc actcccatgc
     2161 atgttctctg agtctgagat ggagacaaac cactgcttct tggcctgcat gaatccacat
     2221 gataatcctg gtgcctgcct gccatgttct ctgtgccgtt tctagaagta ggggttgtgg
     2281 ctgagggcag tggtgtgcag cctctgagag ccagctgctt actctggatc ccagcataga
     2341 cccctaggat gaggggcagc gcaggacttg tggagatctt ggcagacaga aactgcctaa
     2401 acctgcagcc ttcatggtct gagctgaggc ctcataggaa ggaggaaatt ataagcagaa
     2461 ttggccagaa tctttgtagg gttcttatac agggccttgt gcccatgaca caccctatca
     2521 tccctaggaa taataggtaa taatgggtaa ggcctgggaa cattttcaga agacccatgt
     2581 gaggcctaga gagttggtct tacaagacac aactggtggt accctgtaga gtagctaatt
     2641 gacctgtgag ctacaggtcc ctctacagac taagtgaagc atgtgggtag ggcagggaca
     2701 cctctcttcc tgccctgcct gccaggagta gggccttgcg tcttggttga ccctgctgag
     2761 gagctgctgg agaccagtgg ctaggaggat ggcgcctggt gttagataga gaatcagtga
     2821 aagaaaagtg tttactaaac ctttcaagcc ctttgccagc taaataatgg cagcacctcc
     2881 tgttctcaga gcctgcgcag catatctcag ggtcctcaaa catggccagg taggtaagct
     2941 cacccaggct ctgcctttga actggccagg ggtgtagatc tggagccctg gttcctttcc
     3001 tgtgtggaga tacttcgact tcactcaagt ggcccagcaa cttaatttac ctccctcact
     3061 ctagactagc agaaattaac atcctaggcc atgtgtgata gatattagct actatgtatt
     3121 cccatgacca gcgtaattag aatgataata gtatcccaag tcagattaac aagccaggag
     3181 cagcccatga taaacagctc agcaggttca ggaacttgct gtgcaaatgt gttgccaggt
     3241 ttgaacggta gaatccatgt caaagagtag acctcgtgct gcttgagtac tttataggct
     3301 gccacaatgt gatgtttgtg tgagtctcac agataccact cttgttgctg atccttgaag
     3361 tcaaacatta gtgttttatg agctcttcta tcatctcctt attttgttgt cccagccgcc
     3421 atgggcacag ccttagttta ctgacacgta tttccattgt gacactactg ttcaaaagta
     3481 acatcttctg aaagatgatt tgaattaaca ttaaatgtac tccacctagt tatcccaaca
     3541 tgtggaaagc attagcaaaa ggaaaacatc ctaatctgag cccaaggagg cctcaaatct
     3601 gtgttgaggg aatcctcttc ccagtgggag gatgatgcac acgtcacagc acctgactaa
     3661 gcctgcgatt aaataacaaa tagttggaga actcaatata gatacagatt atgttagggt
     3721 aagataaaga atcaacagca acattagaaa gtacacttta gtttactgaa aatgaaggga
     3781 caatatacaa actataagac agctaaaatc ttacctagag ggaaaatgat gggcttgcgg
     3841 gacttcagaa agaacaagcg tcttggacca gtaaacccaa tagaacatac acaggaagat
     3901 ggaaataagc agcacaagtc tctgaaacag aaaactagag actagcaatg aaaccaaaag
     3961 ttggtttata aaagatcaat aacctgggct ggagagatgg ctcagcagtt aagagcactg
     4021 actgcttttc cagaggtttt gaattcaatt cccagcaccc acatggtggc tcaaaccatc
     4081 tgtaacggga tccaatgccc tcttctggtg tgtctgaaga cagctatagt gtattcaaca
     4141 tgtttttcaa aaaatcagta gcctgtgcgc gcgcgcgcac acacacacac ctgtaatccc
     4201 agcacttggg agggtgcaga gtaccagagc aaccccacgc tctgtaaatc ctattaaaag
     4261 tatgcatttg ttttagtgaa a
//
