LOCUS       XM_039082325            2722 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus junctional cadherin complex regulator
            (Jhy), transcript variant X1, mRNA.
ACCESSION   XM_039082325
VERSION     XM_039082325.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082325.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2722
                     /gene="Jhy"
                     /note="junctional cadherin complex regulator; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 21 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:315578"
                     /db_xref="RGD:1309108"
     CDS             139..2469
                     /gene="Jhy"
                     /codon_start=1
                     /product="jhy protein homolog isoform X1"
                     /protein_id="XP_038938253.1"
                     /db_xref="GeneID:315578"
                     /db_xref="RGD:1309108"
                     /translation="MPLWMNKYKPVPKRSSRSPVHHTNLRTPPSGRAFKEEDFNLISK
                     DSLESDSESLPREAKFWSDIKDQIQDKDMEPDSLEEDSSSETEEAAHGTNREGLGAQG
                     AGANHSHHQVEDKYSDLRYDPNWKNKKEEGQLLAVEALPESADSSSDNLPGAPLYPSR
                     EPSMRLSVGKGKEKRSPQSEASLLGSEFLSPKYECGTRQNEFFSELSDSDQEDQEEKS
                     SDLSPYLKSSSSHNEVFLPGSRGPRRRKSRQYFVEKNKLTLGLPAPKTDSYLQLHNKK
                     RGETRLEQISYPIRDAGKMTVQDDKGVENTFMDPEDKWHQRAKQLKNYQEHLSQCEDT
                     KSGNVPRGQSSNAANVQQPSRRTAKARVQKQKKYQNGLKSLGTKEQVVSQNNQNNSLQ
                     QPQTQRLPMDTSSKHEPAAQMTASNPNLQDPRTLTHNPKVTSDPFFPPKETFDRVVYK
                     NSVLGLNTNKRRGHRYKEEKRILYQQQPIYIFSDGDLQDFNELSHRHESLSQRGPQSD
                     YRMNTHRSRSTKTKKPSKEPEAETKYKNIEMLWKLHSSSDMEPVSASPDSRLAQIMEQ
                     HQQALLQLAEVQPSEGSLSSTVFPPILSRVESESQLDSERSHKHQMRMARSNSEGYLL
                     QLEKGKRHRKRSQSRTKSSKLKGYQKRDVKLGGLGPDFASIRDKMQTLLQQKEYAKQV
                     KEYNMKTLSVLSKPQTSKTDSKSTISRKKALDYAKTIPKPKPPNLPYQTMKKTNNSKH
                     SEKEGSLPEISLLEILQSRHEREKQAVAAFKVLHIV"
ORIGIN      
        1 ctctgctagc tgttccttcc tgcgggtgtt ttgacttttt gaggaaggat gtcacgctcc
       61 taatcctcca gccactcccc ctgagggctg agactcctag atggcatcac caacacatgg
      121 ccaacttttc gccataagat gcctctgtgg atgaataaat ataaaccagt ccccaagcgc
      181 tctagccggt ctcctgtcca tcacaccaac ctgaggaccc cgccttcagg cagagccttt
      241 aaggaagaag acttcaacct gatttcaaag gactccttag aatcggattc agaaagcctc
      301 cctcgagagg ctaagttctg gtctgatatt aaggaccaaa tccaagacaa agatatggag
      361 cccgacagct tagaggagga tagttcaagt gagaccgaag aggcagccca cggcaccaac
      421 agggagggcc tgggagctca aggtgctggt gcgaatcaca gccatcatca ggtagaagac
      481 aaatattcag acctccgata tgatcccaat tggaagaata aaaaagagga gggccaacta
      541 ttagctgtgg aagcattgcc agagtctgca gatagctctt cggacaacct gccaggggct
      601 ccgctctacc cttccaggga gccgtccatg agactctcag tggggaaagg caaagagaag
      661 aggagtcctc agagcgaagc ctccttactt ggaagcgaat ttctaagccc aaagtacgag
      721 tgtggcaccc gtcaaaatga gtttttttca gaactaagcg acagtgacca ggaggaccag
      781 gaggagaaat ccagcgacct gtctccgtac ctaaagagtt caagctcaca caacgaagtt
      841 ttcctgccag ggtcacgtgg cccacgcaga aggaaatcca gacagtattt tgtggaaaaa
      901 aacaagctga ctttgggatt acccgctcct aaaacagact cttaccttca acttcacaat
      961 aaaaagagag gagagactcg cctcgaacag atttcctacc ccatcagaga tgctggcaag
     1021 atgactgtcc aggatgacaa aggagtcgaa aacactttca tggatcctga ggacaaatgg
     1081 catcagagag caaagcagct caagaattac caagaacatt tgtctcagtg cgaagataca
     1141 aaatcaggca acgtcccaag aggtcagtct tccaatgcag ccaacgtcca gcaaccttct
     1201 agaagaacag ccaaggccag ggttcagaaa cagaagaaat atcagaatgg cctgaaatct
     1261 cttgggacaa aagaacaagt tgtcagtcaa aataatcaga ataactctct ccaacaacca
     1321 caaacccaaa ggctgcctat ggatacctca tcaaagcatg agccagctgc acaaatgacc
     1381 gcttctaatc ccaatttaca ggaccccaga accctcaccc ataatcccaa agtcacctcc
     1441 gacccattct ttccacccaa ggagactttt gacagagtag tatataaaaa ctctgtctta
     1501 gggctgaaca ctaataaaag aagaggacac agatacaagg aagagaaaag aattttgtat
     1561 cagcaacagc ccatctacat attttctgat ggagatctgc aggactttaa tgaactttct
     1621 cacagacatg agtccctgag tcagagagga ccccagtctg attatcgcat gaacacacac
     1681 aggtccaggt cgacgaagac taagaagcca tccaaagaac cggaggcaga gacgaaatac
     1741 aagaacatag agatgctctg gaaactccac tcttcctcgg acatggagcc cgtgagtgcc
     1801 tctccagact cccggctcgc ccagatcatg gagcagcacc agcaagccct gctacagctg
     1861 gcagaggtgc agcccagcga gggctccttg tccagcaccg tattcccgcc tatcctgtcc
     1921 agggtagaga gtgaatccca gctcgattca gagagaagcc acaagcacca gatgaggatg
     1981 gcccgtagta attcagaggg ctacctgctt cagctggaga aagggaagag acacaggaag
     2041 cgaagccaaa gccgcacaaa gagttccaag ctgaaaggtt atcagaaaag agacgtgaag
     2101 cttggaggcc tgggacctga ctttgcgtcc atcagagaca aaatgcaaac gttactgcag
     2161 caaaaagagt atgcaaagca agtcaaggaa tacaacatga agacactgtc cgtcctgtcc
     2221 aaaccccaga catcaaaaac tgacagtaag tcaacgattt ctcggaagaa ggctttggac
     2281 tatgctaaga ccatccccaa acccaaacca ccaaatctgc cttatcaaac aatgaagaaa
     2341 actaataact caaagcacag tgagaaagaa ggaagcttac cggaaatttc cctgctggag
     2401 atcctgcaga gcagacatga gcgggaaaag caggccgtgg ctgctttcaa agtccttcac
     2461 attgtctagg cagcatttgg tggggatcaa aaatgctatg caagggacgt ggagaaaaga
     2521 aagtgaaccg ttccgtctac gctgagtggt gagcaggccc tgcctgctgc ctgcctgcca
     2581 cccttgtcca ctctgtgcag aagttaatgg tggcatgttt aaccttctgg aaagaaaaat
     2641 atatgtaatt atttattttc caatctgtta gaatttgggc aggtaggcag ctagacaata
     2701 aagcctttgg ttttatattg ga
//
