LOCUS       XM_574050               6973 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus junctional cadherin 5 associated
            (Jcad), transcript variant X1, mRNA.
ACCESSION   XM_574050
VERSION     XM_574050.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 2, 2024 this sequence was replaced by
            NM_001427709.1.
            
            On Jan 21, 2021 this sequence version replaced XM_574050.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6973
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6973
                     /gene="Jcad"
                     /note="junctional cadherin 5 associated; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 39 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     99 samples with support for all annotated introns"
                     /db_xref="GeneID:498764"
                     /db_xref="RGD:1562037"
     CDS             202..4197
                     /gene="Jcad"
                     /codon_start=1
                     /product="junctional cadherin 5-associated protein isoform
                     X1"
                     /protein_id="XP_574050.3"
                     /db_xref="GeneID:498764"
                     /db_xref="RGD:1562037"
                     /translation="MYSVEDLLISHGYKPARDAPVPREDKSERCRSRRTGPQAGQGLL
                     NGYKDGPTAHAHSRTALGTGHVSNSEKHSSKPRGHQEYQSSSSRTPEAGFLSQPSLAW
                     SSQPQSGRDHIYWSRGQQEGSGSLCPRDQEEVEVRRMAQAHSLPIHVRESPWEVARRT
                     EHVMKNALWEAELRMPTPAKWQDMTLESWKQPRKLGRQASDGDGQKRSQERFEDLYQF
                     VHGEHMLTSQNRKKSQSLPRALSPKSLNFTEIPVPLHDGHITGVPKVPPYPPSCPPPL
                     EPTRNLEKTSSSGPFPRPKFGKPLKTPCHGSQPQPRGEGGFQDHQHRDPRGCHPTRSK
                     DPGHELGMLDTGLEPPVYVPPPSYRSPPQHIPNPYLEDPIPRHVSSSQSQQQQLPEKP
                     EADCLLPSGSLAARDLYNAMPGSPPPGPPPHPYPIATHGDSIQYIPFDDPRIRHIKLA
                     QPPEFYEEARLEDTSYNSGFIATQEPALGKRQYNDALSAPRGPILPPVNERGSAFAHS
                     SPQWLQGQLPMASEPGGFPGQTEHHGMRGLTADVRDSKVESHASSPQPQSEGTCRTHT
                     KLRKFETGIQSRKSSKKSNATIFCLVSVPVKSESLVPDTDTNNNDLKLGADKNHGLYQ
                     GPALEEQSLLSMSSTDLELQALMGSMAWRRTSPRQVLGESEDGQTDDPRTLHLIKPRE
                     LRASGSWPGHQYRDQQTQTSFPEDSKSSQLLPATKPGEASNAALTPTCPDDTASEVHL
                     HAALASSDPSQKPSVPHLRGQMSLSPSRNSAFSRTSSTINQTSMPKGASGQLPSANPV
                     PKPEVVKGESTVGQCNSTQLFGQFLLKPVSRRPWDLISQLESFNKELQEEEESHGVSS
                     GGDSEDSEAEQPEDCADSSAKTRGHQETRREQRPAELALGEAGPPGGRLGESQSRSKE
                     PKPGHPCARSQALGPSQEEDSRGVPVQWGHGNLSAEQKSQEALNGMCERDISPRPVSR
                     IAPVDTQAASLFCLAEPRGSQELTKVNDALGSVELGRETPIRVDNGGDTEVLPCVLPP
                     LADRCRGLSTPNFPSLELTLGQEQRAYKSECQGLDNTVEVLPSESLQERAERILGIEV
                     AVESLLPGARRTEQSQLPKPGTSACSPRSSREDSQPSSASPEDPTVATDAFYGRRKCG
                     WTESPLFVGERAPQAAVCSDVDGFPTSQATSPEPEKKKEAKPPFKSTLFHFMEKSTNV
                     VGPEKRLRNSSNVIESSQGKLVSLPKRADSARLVRMREVNSLSQMRCLSSKSADSMEE
                     PDPLKVIKSSAWPSEGLTSPSGKDQAWQAEYLPSVSQNENGHPEVIREKMSDQDLWCA
                     DSYDPSRVERV"
ORIGIN      
        1 ggactgtgcg gggcgaaggg cggggcgtac ggctgtgctc cgagcatgct ccgccgagta
       61 gtagcaggcg gggtggctcg tgctggtccc cggccggccg aagcggcagc ggcttcggcg
      121 cgggacagta tgcgggaacc tctcgtgatg cgtcctgcca ccatgatggt tcaagcttgt
      181 gaggtttgat gacgctgcac catgtatagt gtggaagatc tcctgatttc tcatggatac
      241 aaaccagccc gagatgcccc agtgccacgt gaggacaaat cagagcgatg caggtcaaga
      301 aggacaggac cccaagctgg ccaaggccta ttgaatgggt acaaggatgg ccctacagcc
      361 catgcccaca gtaggacagc cctaggaaca ggacacgtga gcaactctga aaagcacagc
      421 agcaagccaa gaggccacca ggagtaccaa agctcttctt ctagaactcc cgaggcgggg
      481 tttttaagtc aaccctcctt agcatggtcc tctcagcccc aaagtggtag agaccacatc
      541 tactggagca gaggacagca ggagggcagt ggctccctgt gtcccaggga tcaggaagaa
      601 gtggaggtca gaagaatggc tcaggctcac agtctgccca ttcatgtgag agagagtcca
      661 tgggaagttg ccagaaggac agagcatgtg atgaagaatg ccctttggga agcagagctg
      721 agaatgccga ctcctgctaa gtggcaggac atgaccttgg aaagctggaa gcagccaagg
      781 aagttaggga ggcaagcgtc tgatggtgat ggacagaaaa gatcccagga aaggttcgag
      841 gatctgtacc agtttgtcca tggagagcac atgctgacat ctcagaacag aaagaaatcc
      901 cagtcactgc cccgagctct ttcccccaag agcctgaatt tcacagaaat tcctgttcca
      961 ctacatgatg gtcacataac aggtgtccca aaagtgccac cataccctcc cagctgccca
     1021 ccgcctttgg aacccacaag gaaccttgag aagactagtt cctcaggccc ttttcccagg
     1081 cctaagtttg ggaaacccct taagactcca tgccatggct cacaaccaca gcccagggga
     1141 gaaggtgggt ttcaggacca ccagcacagg gacccacgtg gctgccatcc aacaaggagt
     1201 aaggatcctg gccatgagtt gggtatgctg gatactggct tggagccccc tgtgtatgtg
     1261 cctccacctt catacaggtc acccccgcag cacattccaa acccctacct tgaagatccc
     1321 attcccaggc atgtgagcag cagccagagc cagcagcagc aactacctga gaaacctgag
     1381 gccgactgtc tgcttccttc tggctccctt gcagctaggg atctctacaa tgcaatgcct
     1441 ggctctcctc ctccaggtcc tcctccacat ccttatccca ttgccaccca tggggattct
     1501 attcagtaca ttccttttga tgacccacgg atccgacata tcaaactagc tcagccccca
     1561 gagttctatg aagaggcaag gctcgaggac acatcctaca actctggttt cattgctacc
     1621 caggaaccag ctcttgggaa aagacagtac aatgatgccc tttcagcacc acggggccca
     1681 atactcccac cagtcaatga gcgggggtct gccttcgccc attccagtcc ccagtggctg
     1741 cagggccagc tccccatggc cagtgaacct ggaggcttcc ctggccaaac agagcatcat
     1801 ggcatgcgag gattaacagc tgatgtgaga gacagcaagg tagaaagcca cgcctcttct
     1861 ccacagccac agagtgaggg aacctgcaga acccacacga agctcagaaa gtttgaaact
     1921 gggattcaga gcaggaaaag ttcaaagaaa agtaacgcaa ccatattttg tttggtttct
     1981 gtcccagtta aatctgagtc acttgtgcca gatacggata caaacaacaa tgacttaaag
     2041 ctgggagctg ataagaacca tgggctgtat cagggtccag ccctggagga gcagagtctg
     2101 ctgagtatgt cttccactga cctggagctg caagccctca tgggaagcat ggcctggaga
     2161 agaacatccc caaggcaagt tctgggggag tcagaagatg gccaaactga tgaccccaga
     2221 accctccacc tcatcaaacc cagagaactc cgggcttccg gctcatggcc aggacaccag
     2281 tacagagatc agcagaccca aaccagtttc cccgaagact ccaaaagctc acagctcctc
     2341 cctgccacaa agccaggaga ggccagcaat gcagcactga ccccaacatg cccagatgac
     2401 actgcctctg aagtacacct gcatgcggcc ttagcatcca gtgaccccag tcagaagccc
     2461 agtgtacctc acctccgcgg gcaaatgtcc ctcagcccat ctcgaaatag tgctttctca
     2521 aggacttcct caaccataaa ccagacgtct atgcccaaag gggcttctgg ccagctccct
     2581 agtgccaacc ctgtacccaa gccagaggtg gtgaaggggg agtccacagt aggccaatgc
     2641 aatagcacac aactctttgg tcagtttctc ttgaaaccag taagccggcg gccctgggat
     2701 ctgataagtc agttagaaag ctttaacaag gagcttcagg aagaggaaga aagccatggt
     2761 gttagcagtg ggggcgatag tgaagacagt gaggcagaac agccagagga ctgtgctgac
     2821 tccagtgcca agaccagggg ccaccaggaa actagaagag aacagcggcc tgcagagctg
     2881 gcactggggg aagcagggcc cccaggagga agacttggtg agtcacagag tcggagtaag
     2941 gaacccaaac ctggccaccc gtgtgcccgt tcacaggctc tggggccatc acaggaggaa
     3001 gacagcagag gcgttccagt ccagtgggga catggaaacc tgtctgcaga gcagaaaagc
     3061 caggaggctt tgaatgggat gtgtgagcga gacattagcc caaggcctgt gagcaggatt
     3121 gcgccggttg acacacaagc agcctctttg ttctgtctgg cagaaccgag aggaagtcaa
     3181 gaactcacca aagtcaacga tgctttaggg tctgtggagc tgggcagaga gactcccata
     3241 agggtggata atggtgggga caccgaggtc ctaccctgtg tcctgccgcc ccttgctgac
     3301 agatgtcgag gactctcaac accgaacttt ccatctttag agctcacact gggacaagaa
     3361 cagcgtgcct ataaatcaga gtgtcagggt ctagacaaca ccgtggaagt ccttccaagt
     3421 gagtctctgc aggaaagggc agagaggatc ctgggcattg aggtagccgt ggagtccctt
     3481 ctgccaggtg ccaggagaac agaacagagc cagctcccca agcctggtac aagtgcctgc
     3541 agcccaagat catccagaga ggactcacag cccagctcgg catccccaga ggaccccaca
     3601 gtggccactg atgctttcta tggcaggagg aagtgtggct ggactgagag tcctcttttt
     3661 gtaggagaaa gggcccccca ggctgctgtg tgctcagatg tggatgggtt ccctacaagc
     3721 caggccacca gtcctgagcc tgagaaaaag aaagaggcga aaccaccctt caagtccact
     3781 ctgttccatt tcatggaaaa gtccacaaat gtggtgggcc ctgaaaagag gctcagaaac
     3841 tcttccaacg taatcgagag ctcacaagga aaactggtgt cactccctaa gagggcagac
     3901 tcagctcgct tggtcagaat gagggaggta aactccttgt ctcagatgag gtgtctgagc
     3961 tccaagagtg cagactccat ggaggagccg gaccccttaa aggtcatcaa gagttcagcc
     4021 tggccgtcag aaggccttac ttccccgagt ggtaaagatc aggcctggca agcagagtac
     4081 ctgccctctg tctctcaaaa cgaaaacgga caccctgaag tgataaggga gaaaatgtca
     4141 gaccaggact tgtggtgtgc agattcctat gatcctagcc gagtagagag ggtgtgacgg
     4201 ctgcccgtgg agctcccagc acctcggcta gcagagcgtt ctctggttga gccacctgtc
     4261 ttgctcatgc tgaagctgga aactggggtt tgcagtgtcc gactcatcct tcgacagcca
     4321 tccctacgat tgttacggag ataaagtggt ggtctgtggg caccgtctgt ctctatagca
     4381 tggatatgta attcatatat ttagaacaaa gtatttacac cagttccctt ctggggcata
     4441 aggccaacct ggcaaatagc tttgtataaa tctggtgtta ggtgaaaaat caaacacgga
     4501 agcagtgggt gattctgatt gtaccctgat ctcatccatt ccctgccaca tctccccagc
     4561 cctcgctcac atttaggagc gtggcccagg agtttggcct cgaacagtgt aagaggaatg
     4621 tgaattagta catacgaccc gtttttattc ctgaatctta gtaacgtgtg agctaactgc
     4681 cgtgaaactc acaatggctc ctcggtgttc agaagggtca cactcgctgt cactccccct
     4741 cgaggtgatg ccttggcatc ggggcagacg tgctgcgctc tgctttgcac tcagtctcca
     4801 taggtttacc ttctgtgtga atgtttagaa ttctctctat gaaaaatgat ggctggttta
     4861 aaatagacca tggtaacaaa gtaactttat tgctttttat aaaattgcta tttttctatg
     4921 atgtataaac agttcttagg tggcagattt ttaaggaagt gctattttat ttaagagtct
     4981 atccctgtgt gtgtgaggga cccaagaggg cccaccctgg ctctaaagcc tttatcccgg
     5041 ctccaacttc agctctgctc cttttcacag tgtcatcgaa aaccaatcac atgttcatta
     5101 attctcataa agatgtttgc acaggcagag ctgcaagatt acattagaag ataccattct
     5161 caaaatcagc ccacaacttc atggtcacct tgcagccgtg cccactagac ttgccaaacc
     5221 ccatcctttc atctttgtat tcctgtgggg aatttgccct aagaagagac tgttctcctg
     5281 cctacctacc gccttgctcc tttaaagaaa catatatttt tgtctagaat gacctgatta
     5341 attaatcttg catattctga aaagtgcttg ggaaccgtac acaggtggca tactgtgtga
     5401 gcatacacca tgacagacgt ataaagaggc ctatggttcc actcttgcat ttgcctgcat
     5461 agttcgtgaa ttttgtgcca tttcaccctt ctgcctgagg aaggtattct tgttagctga
     5521 cattttccaa agcctttgtc ccctttcttc ccctcttacc tatctccctg tcctccccac
     5581 caccacccca tccttgcctc tctatctcta ttagtttttt gggacattta gttaacctgt
     5641 tttcgggcat gccaagtttc tgcagtgtga gcccatggct ggtcagtcct ctggtcctaa
     5701 gctcaaacag gactttgaca gtctcttatg tacaccatat cattttatta cctaagaacc
     5761 tcacatgcac tgactggaca acacaaagca gagtccaagt agcctcggca caccttccca
     5821 gatgcacaca tctgcagtct tcctgacaca ccatccgaga cgcacacatc tgcagtcttg
     5881 gtttgcacct atttctcatg gtcgcccttg tccagagctt ggctctcatg ggaaggggtg
     5941 tggcctgtag atctccctgg ggcagcgggt aagcaggctg gtggtctgca atggtggttg
     6001 aatcatctgc taggggcaag tgaaggctaa gttatactgg actctgtggg gctgcacttc
     6061 cctccttaaa agaaaaaagt gaaagcagcc gtttgcatgt gtacacatgt gtacacatgt
     6121 gaagacctca gtgcatacct gtgtacccgt gtacatgctg taatgacctc tgtcaagtaa
     6181 cctgatacca tctaaagact gtgagagaga gaaggatcct gaaggaaaac tgtcgtgcct
     6241 tacgtatctc agtctgaaac aagctgtgtt tccgtattgt cttgtttgaa attgctttat
     6301 actttcctgc agctggtcag tcacgtaatg aacattataa tttaacccta gtttttccca
     6361 tattcaagcc catgagcaaa tgtttgggaa agaagtggta atgttaaact tagaaacttg
     6421 aaattttgac ctgtaacttt ttatacttct aggtaatgta tatccgacca aaaaccattt
     6481 tgccaaggtc ttaaggtcaa tactaaccaa cattctgtat gtaaatttcg tgtgtgccct
     6541 aaccaccatt ccatatgtta atttcatgtg tgcccgtggc tttttggtag aaaaagattt
     6601 ccacattctg tatttgtaat tatttttctc attacatatg ttggtttggt attcaataat
     6661 ttggagtttg taaaatttaa agttctaatt tcaaccattt gaactaaaaa gtacaggagg
     6721 aattatgcct gtggttgttt tggaacatac agacatgatg gggaagtggt ttctttggct
     6781 tctttagggg aaattgcctg aaggactgta aacgaggtat cttacttatt cttacaaata
     6841 cttacagttg tgtttctgta agccccagga accctctaaa gatgcaacca gcccctacaa
     6901 gggaccacca gaagtatttc cataattata aacacttatt tcctttatta ataaagaccc
     6961 tgaatgtgca tca
//
