LOCUS       NM_001400852            2868 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus JAZF zinc finger 1 (Jazf1), mRNA.
ACCESSION   NM_001400852 XM_001065610
VERSION     NM_001400852.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Zhou,M., Xu,X., Wang,H., Yang,G., Yang,M., Zhao,X., Guo,H.,
            Song,J., Zheng,H., Zhu,Z. and Li,L.
  TITLE     Effect of central JAZF1 on glucose production is regulated by the
            PI3K-Akt-AMPK pathway
  JOURNAL   FASEB J 34 (5), 7058-7074 (2020)
   PUBMED   32275331
  REMARK    GeneRIF: Effect of central JAZF1 on glucose production is regulated
            by the PI3K-Akt-AMPK pathway.
REFERENCE   2  (bases 1 to 2868)
  AUTHORS   Nakajima,T., Fujino,S., Nakanishi,G., Kim,Y.S. and Jetten,A.M.
  TITLE     TIP27: a novel repressor of the nuclear orphan receptor TAK1/TR4
  JOURNAL   Nucleic Acids Res 32 (14), 4194-4204 (2004)
   PUBMED   15302918
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jan 28, 2022 this sequence version replaced XM_001065610.7.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.12997.1,
                                           SRR26643429.16443.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-175               JAXUCZ010000004.1  83513470-83513644   c
            176-248             JAXUCZ010000004.1  83339655-83339727   c
            249-445             JAXUCZ010000004.1  83257396-83257592   c
            446-615             JAXUCZ010000004.1  83219635-83219804   c
            616-2868            JAXUCZ010000004.1  83210058-83212310   c
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q24"
     gene            1..2868
                     /gene="Jazf1"
                     /note="JAZF zinc finger 1"
                     /db_xref="GeneID:685879"
                     /db_xref="RGD:1589007"
     exon            1..175
                     /gene="Jazf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..792
                     /gene="Jazf1"
                     /codon_start=1
                     /product="juxtaposed with another zinc finger protein 1"
                     /protein_id="NP_001387781.1"
                     /db_xref="GeneID:685879"
                     /db_xref="RGD:1589007"
                     /translation="MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIDTDPRV
                     LEKQELQQPTYVALSYINRFMTDAARREQESLKKKIQPKLSLTLSSSVSRGNVSTPPR
                     HSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAISSEAIL
                     SSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGKSYKT
                     AQGLRHHTINFHPPVSAEMIRKMQQ"
     exon            176..248
                     /gene="Jazf1"
                     /inference="alignment:Splign:2.1.0"
     exon            249..445
                     /gene="Jazf1"
                     /inference="alignment:Splign:2.1.0"
     exon            446..615
                     /gene="Jazf1"
                     /inference="alignment:Splign:2.1.0"
     exon            616..2868
                     /gene="Jazf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctccgcctc cgcgcgcggc gctcgcagag ccgactccgg ggggctctcg atgtagcacc
       61 atgacaggca tcgccgccgc ctccttcttc tccaacacct gccgcttcgg gggctgcgga
      121 ctccacttcc ccacgctggc cgacctcatc gagcacatcg aggacaacca catcgataca
      181 gatccacgtg ttttagaaaa gcaggaactg cagcagccga cctatgtcgc cctcagttac
      241 attaatagat tcatgacaga tgctgcacgc cgagaacagg aatccctgaa gaagaagatt
      301 cagccgaagc tttcactaac cctgtccagc tccgtgtctc gagggaatgt gtccactcca
      361 ccacgccata gcagtggaag ccttactccc cctgtgaccc cacccatcac cccctcctct
      421 tcattccgca gcagtactcc aacaggcagc gagtatgacg aggaagaggt ggactatgag
      481 gagtcagaca gcgacgagtc ctggaccaca gagagtgcca tcagctctga agcaatcctc
      541 agctctatgt gcatgaatgg aggggaagag aagccttttg cctgtccagt tcctgggtgt
      601 aaaaagagat acaagaatgt gaacggcata aagtaccacg ctaagaatgg tcaccgaaca
      661 cagatccgag tccgcaaacc gttcaaatgc cggtgtggga agagttacaa gacagctcag
      721 ggcctgcggc accacacaat caatttccat cccccagtgt ctgccgagat gatcaggaag
      781 atgcagcagt aacgtgctgg tcagaactgt gccaagaaat cctcaccagc agttgctgat
      841 tttgaaaaca gccacctttt ttcaggggaa gcactcagca accctttaat ggaaaataat
      901 taaatgcatg ctttaaactt ttctgtaatt ttggaatgat gtatctttgt agttaatgat
      961 tttgtacatt tgcacatgta atcatcacgc ccatttcatt actttgatat aaggtgctaa
     1021 acaaaaaagc tctaggttct tcagcacatt tcccccaatg aaataaaact aagggcatgt
     1081 tgcatattgt ttaaccatag tgcagtgatg tcaactggga gagaaggggc tggcactgag
     1141 atgttttaag attgtaatgt gattgaagct tttcaacaca tcgactcaca taaaaccaaa
     1201 ataatacctt cattatccaa ctggttacca tgccttacat aatggagtta gtatttgtga
     1261 gtagagagac ttaggtaacg gaaatataaa taagaatgtt ttaacataat atgctaaaaa
     1321 tattttcata tttaaataac atgcataaaa cgttatgcat aatgtgtttt ttttagttac
     1381 tatcttgccc tttaaaaagc tgaaactctt gccatcgaac ttaccaatca ttagtgttct
     1441 aaatggcatc tttgtgcaga agactcagtt cactcattag tgttcacata ctcatcgagt
     1501 gcctgctgga cgcaagagac tgaatttata cccaatgtta cttgtggacc aagacaccag
     1561 tgtcgaaata ctttccccct gaaatgttag caaacactta gaaatacttc agggcaagtt
     1621 gtgtgtgtgt gagcttagtt acagcttcat cagcggatga agctttaaag cactttgtag
     1681 ttctccattg ccaacaattt tgttgccaat tcttgcaacg gttgccctga gagatctgtg
     1741 gttgcagtgc gaattaaagt tcagaacgtg tttgaaagat ccccacgccc ctttccgctc
     1801 agttgtgact tcctttaagg cactttccca tcacactgtg gatgtctgca tcgtcattag
     1861 aagcgtgttt agctttagaa gcccttgccg gattatgcag ataagcctta ctgacataag
     1921 tgcttcgtgc agcaggtggt caaggaggac gactactaac ccattaggga cctacatcgg
     1981 atcgtcccgg agcctctcac cgacagtacc atcatgcgtt gagtgttctt ttctcccaag
     2041 tgctattcct taaacaagag tttactggtg gcctactacg cagcaaacgt tctttgacac
     2101 atcgaactgc acacagcaga ctggtgagag gagactcatt ccctctaaga taaccttccc
     2161 cacgctccca tccgacgcag cctcacacag aactgacagt gttcctcctc agtatttatt
     2221 tacactgtga agataattct gctaaacaga tgggtacgct gcgacattaa tccctcatgc
     2281 tgagggcttt aaaaatattt ataaagatgc tgcccactaa aaatgtcctc agctctgaaa
     2341 agtggtcttg gtcttgacta tacagtgtta gctctcatgg tgttaaacgg atgatccaga
     2401 attgagaatc agaagttggt gcaaaaggag gccctacttg ctccatacct acctacagtt
     2461 gaccaaaaag ttataggcta gcagctaata gttagctttg ctctttctag tgtgagaaac
     2521 tgcaggctgg atcagtagtt cagcagctac agtcataaaa acagtcattg tgcatgttag
     2581 aacctttcag tgatgaaacc cagtttcctc ttcttcactg tgacagtatt accaagcagg
     2641 tgaggaaggg attttgttac accgtgtata gtgaatgtat tgtaccgtgt ctgtgaaaac
     2701 cctgctttaa attatatttt catatgtttt gttggggaca gagcacatta ggtttgaaag
     2761 caacaaaact atcagaacta aaggcaatgt actcactttc tgtcaagaaa agctgcttaa
     2821 taaatgtaca tgaaatcaca tttaaaataa actgcctctg acccaaaa
//
