LOCUS       XM_017600707            5584 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus jumonji and AT-rich interaction domain
            containing 2 (Jarid2), transcript variant X1, mRNA.
ACCESSION   XM_017600707
VERSION     XM_017600707.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017600707.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017600707.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5584
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5584
                     /gene="Jarid2"
                     /note="jumonji and AT-rich interaction domain containing
                     2; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 26 ESTs, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 111 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:681740"
                     /db_xref="RGD:1591663"
     CDS             453..4298
                     /gene="Jarid2"
                     /codon_start=1
                     /product="protein Jumonji isoform X1"
                     /protein_id="XP_017456196.1"
                     /db_xref="GeneID:681740"
                     /db_xref="RGD:1591663"
                     /translation="MPPPFSVQFSCRHINNLLSDCLPSPSAPAGVRLSYCLAESALPL
                     AYYVLGRIVDKCSGACLTAFSLPPSPPLSFFLCLCNDPALRMAAPRVCQVQFLVAYLE
                     EPGIEGLLGNDQSKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQA
                     QRKFAQSQPNSPSTTPVKTVEPLLPPPATHISDLSKRKPKTEDFLTFLCLRGSPALPN
                     SMVYFGSSQDEEDVEEEDDETEDVKTATNNASSSCQSTPRKGKSHKHVHNGHVFNGSN
                     RSAREKEPAQKHRGREATPGKEKHSEHRADGRREQASVAQPTANPPAGSSTKGLAASH
                     QPPPSHRSAQDSRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKG
                     TVTYTKAKRELVKETKPSHHKPSSAVNHTISGKSESSNAKTRKQVLSLGGASTSTAPA
                     ASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKQQSPPKKMKGTAGIA
                     EAPGRKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKSEGTPC
                     ENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRA
                     QVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRS
                     QGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLA
                     KLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTENDHHKFHSLPR
                     FEPKNGLIHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLDDFY
                     KCIYKGRSVSLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVD
                     TNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSC
                     WSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMI
                     SPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFET
                     AKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRQLFE
                     AGLHSSARYGSHDGSSAVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQENENVV
                     FCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSGKHGGIENCLNKPTPK
                     RGPRKRATVDVPPSRLPSS"
ORIGIN      
        1 gcaggagggg ggagggagga attggaggag gagcatgtga agagagattt ctgcagtctg
       61 tctggagagc tgcccaggtt tcccagccaa aaaaacaaat aaaaataaat aaaagccaag
      121 tgctgaatga cacagattat gatattaaaa agggataccg ttgaaacatt gccctgttcc
      181 ctgctgttgt tggagatggg tgtgtgcagc agggaggggc agttagtgca ctgtataaca
      241 ggccattcct tggacataaa agtccgtaca attaaattgt gagtgtccct tgccaatagg
      301 gtcccctccc ccctcgtggc agaaattctg taattttgat ttgtctgcat tgcaggttgt
      361 ggaaatagca ggatggaaag ctagttccct tcgccttttc tcattttaat tcatcaaaat
      421 ggcaaaaacc agggaggggg aaagtcagcc agatgccccc tcctttcagt gttcaattct
      481 cttgcaggca cataaataat cttctctccg actgtctccc ctccccctca gcccccgctg
      541 gtgttcggct gtcctattgc ctcgcggagt ctgcactgcc gcttgcttat tacgtactgg
      601 ggaggattgt tgacaagtgc tccggagcct gcctcactgc gttctccctc cctccctccc
      661 ctcctctgtc cttcttcctc tgtctctgca atgatccggc tctgaggatg gctgctccac
      721 gggtctgtca ggtgcagttt ttggtggctt atcttgagga acctgggata gaagggctcc
      781 ttggtaatga ccagtctaag gcattaggac cagcttcaga gcagtcagag aatgagaagg
      841 atgatgcctc ccaagtgtcc tctactagca acgatgttag ttcttcagat tttgaagaag
      901 ggccgtcgag gaaaaggccc aggctgcaag cacaaaggaa gtttgctcag tctcagccga
      961 acagtcccag cacaactcca gtgaagacag tggagccttt gctgcccccg ccagctactc
     1021 acatttctga cctctctaaa aggaagccta agacagagga ctttcttacc tttctctgcc
     1081 ttcgaggttc tcctgcgctg cccaacagta tggtatattt tggaagctct caggatgagg
     1141 aggatgtcga ggaggaagat gatgagacag aagatgtcaa aacagccacc aacaatgctt
     1201 catcttcgtg ccagtcaacc cccaggaaag gaaaatccca taagcatgta cacaacgggc
     1261 atgttttcaa tggctccaac aggtcagcac gggagaagga acctgctcag aaacacagag
     1321 gcagagaggc cacgcccggg aaggagaagc acagtgagca cagggctgat ggccggaggg
     1381 agcaggcttc agtggctcag cccacagcca acccgcctgc gggctcctcg accaaggggc
     1441 tcgccgccag ccaccagcct cccccttcac atcgctcggc tcaggattca cggaaacagg
     1501 tgtctaaggt aaatggagtc actcgaatgt catctctggg tgcaggtaca aacagtgcca
     1561 aaaagatccg agaagtcaga ccgtcaccat ccaaaactgt gaagtacact gccacagtga
     1621 ccaaggggac tgtcacatac accaaagcca agagagaact ggtcaaggaa accaaaccca
     1681 gccaccacaa acccagttca gccgtcaacc acacaatctc agggaaaagt gaaagtagca
     1741 atgcaaaaac ccgcaaacag gtgctatccc tcgggggggc gtccacgtcc accgcgccgg
     1801 ctgccagcgg cctcaaggcc agcagcaggt tgaacccaaa gtcatgcact aaggaggtgg
     1861 gggggcggca gctgagggag gggctgcgga attccaaaag gagactggaa gaggcacagc
     1921 aggtggataa gcagcagtca ccccccaaga agatgaaggg gacagcaggc attgctgaag
     1981 cccctggcag aaaggcctcg gcggcttcag gagagaagtc tctgctgaac ggacacgtga
     2041 agaaggaagt gcccgagcgg agtttggaaa ggaatcggcc aaaacgggcc gcagctggca
     2101 agaatatgct gggcaaacaa gcacatggca agtcagaggg caccccctgt gaaaatcgtt
     2161 ctacctcgca acccgagtcc tcgcacaagc cgcacgaccc gcagggcaag ccagagaagg
     2221 ggagcggcaa gtctgggtgg gcagcgatgg acgagatccc tgtcctcagg ccctccgcca
     2281 aggagttcca cgacccgctc atctacatcg agtcagtccg tgctcaggtg gagaagtacg
     2341 ggatgtgtcg cgtgatcccc cctccagact ggcggccaga gtgcaagctc aacgacgaga
     2401 tgcgctttgt cacgcagatc cagcacatcc acaagctggg ccggcgctgg ggccccaatg
     2461 tacagcggct tgcctgtata aagaagcacc tcagatctca gggcatcacc atggatgaac
     2521 tccccctcat aggaggctgt gagctcgacc tggcctgctt tttccggctg attaatgaga
     2581 tgggcggcat gcagcaagtg actgacctca aaaaatggaa caaactagca gacatgctgc
     2641 gcatccccaa aactgcccag gaccggctgg ccaagctgca ggaggcctac tgccagtacc
     2701 tgctttccta tgactccttg tcccccgagg agcaccgacg actggagaag gaggtgctga
     2761 tggagaagga gatcctagaa aagcgcaaag ggccattaga ggggcacaca gagaacgacc
     2821 accacaagtt ccactccctg ccccgctttg agcccaagaa tgggctcatc catggtgtta
     2881 cacccaggaa tggcttccgt agcaagctca aggaggtggg ccgggcacca ctcaagacag
     2941 gccggcggcg actgttcgct caggaaaaag aagtggtcaa agaggaagaa gaagacaaag
     3001 gtgtcctcga tgacttctac aagtgcatct acaagggaag atctgtttct ctaacaactt
     3061 tttatcgaac agcaagaaac atcatgaaca tgtgcttcag caaggagccc gcaccagcag
     3121 agatcgagca agagtactgg aggttagtgg aagagaagga ctgtcatgtg gccgttcact
     3181 gtggaaaggt ggacactaat acccatggca gcgggttccc ggtggggaaa tcagaaccct
     3241 tttcaaggca tggatggaac ctcactgttc tccccaataa cacagggtcc atcctgcgtc
     3301 accttggtgc tgtgcctgga gtgactattc cctggctaaa tattggcatg gtcttttcta
     3361 cctcatgctg gtctcgagac caaaatcacc ttccatatat cgactactta cacactggtg
     3421 ctgactgcat ttggtattgc attcctgctg aggaggagaa caagctggaa gatgtggtcc
     3481 acaccctgtt gcagggcaat ggtaccccag ggctgcagat gctggagagc aatgtaatga
     3541 tctccccaga ggtgctgtgc aaggagggga tcaaggtcca caggactgta cagcagagcg
     3601 ggcagttcgt tgtctgcttt cctggatcct ttgtgtctaa agtgtgctgt ggttacaacg
     3661 tctctgagac tgtgcacttt gctactaccc agtggacgag catgggcttc gagactgcca
     3721 aggagatgaa gcgccgccat atagctaagc cattctccat ggagaagttg ctctaccaga
     3781 ttgcacaagc agaagcgaaa aaggaaaatg gccccaccct cagtaccatc tcagcccttc
     3841 tggacgagct cagggacaca gagctgcggc agcgcaggca gctgtttgag gccggccttc
     3901 attcttccgc acgctatggc agccatgacg gcagcagcgc agtggcggat gggaagaaaa
     3961 agcctcgaaa gtggctgcag ctggagactt cagagaggag gtgccagatc tgccagcact
     4021 tgtgctacct gtcgatggtg gtacaggaga atgagaacgt cgtgttctgc ctggagtgtg
     4081 cactgcgcca tgtggaaaaa cagaagtctt gccgtgggct gaagctgatg taccgctacg
     4141 atgaggagca gatcatcagt ttggtcaacc agatatgtgg caaagtgtct ggcaaacacg
     4201 gtggcattga gaactgtctc aacaaaccca caccaaaaag aggtccccgc aagagagcga
     4261 ctgtggatgt gccgccatct cggctcccgt cctcatgaag atgctgaacc cacggtcact
     4321 cacttctata ttttttgtaa ttactatatt ctagtttgga gtacttgctg taggatacaa
     4381 gctgtctttg cactagctct aaagaagaat ttcttctggt tttagagaac tgattttgtt
     4441 ttagcattaa actgttgaag ttttgtacgt agacacctag gtcctgcagt caggttggaa
     4501 gctgcgtgca ctcactgtct aaacccttga gggctggatt gatttgtgtc gccccacggc
     4561 tgagaaaagc cttttttgtt tgtttttgtt ttgttttggt aactgttaaa gaataaaggc
     4621 tttttaaccc atttttgaag agggtgaagt ttggagaaca agttttaaaa ccatcagtca
     4681 gatgagattt tttctagttt ggaaaaggga tagaggactc tcacacacac acacacacac
     4741 acacacacac acacacacac gaaaacttga aatggctttt tttggctgtc ttttcttctg
     4801 acattgcgag gggagtttgt aactttgagc cccgtttgtt tggctgggcg gctatggcag
     4861 ctgaagcgaa atgtgaggtt tgagtgacga ggttctcaca ccagcacatc actatgcatc
     4921 cgctcgagga agagagagga caaagactgc ctgccttgga gggtcactga gggagacctg
     4981 tgcctgattt cattaggaaa tccattctgt tatttttttt ttttttggtg ctgttggcta
     5041 ctttatcaaa aacaaaaaac ccttcgatag catccttgag gaaagaggaa aacagcagtt
     5101 gactgtaagt gcttccctgt catccacgtg caatctcctg acatcccacc tccatctctg
     5161 ctcgtgtccc tcacacatca gcattaatct ctgtttccca cacttggcca ctaagtctgc
     5221 agttgttttg aatgtgaaga cacatctgtg ctcatcctgt ctgttttttc tcttcatgtt
     5281 ttaacaaaaa agaaaaaaaa aacaaaaaaa aaaatcccat cccttttgta catactcctg
     5341 taaattgttt taaatacttg agccttttct cggtgggggg agggaagggg tgagaagatg
     5401 aagaaaaagc cttacatttc agtttcttca tcgctggatt ggatgcttac agggtttttc
     5461 ttgtaacatt tataagtgct gcttacatca ctcaacaaca acaaaacatg gtaatggagt
     5521 agctgttgcc cttctccggt tgtgtgtaca gtatgtgtgg aataaaaaag ggaaactgtt
     5581 ttca
//
