LOCUS       XM_039082349            1425 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus junction adhesion molecule like
            (Jaml), transcript variant X1, mRNA.
ACCESSION   XM_039082349
VERSION     XM_039082349.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082349.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1425
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1425
                     /gene="Jaml"
                     /note="junction adhesion molecule like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 100
                     samples with support for all annotated introns"
                     /db_xref="GeneID:315610"
                     /db_xref="RGD:1562572"
     CDS             275..1414
                     /gene="Jaml"
                     /codon_start=1
                     /product="junctional adhesion molecule-like"
                     /protein_id="XP_038938277.1"
                     /db_xref="GeneID:315610"
                     /db_xref="RGD:1562572"
                     /translation="MLCLLTLIVIPVVLVSVGYPQGLPDLTVSSLKLRVHVGESALMG
                     CVVQSTEEKPVDKVDWVFSKGEHAENEYVLYYYSSLSVPTGRFQNRSRLVGDLLRNDG
                     SLLLQDVQKADEGIYTCEIRLKNEGSVSKKFVLLHVLPEEPKELRVHVGDPIQMGCFF
                     RSTEERRVTRVNWMFSSGKHAQEEIVLSYDFNMHSGTFQGQGRFRNRVDLTGDISRND
                     GSIMLQTVKKSDQGVYTCSIYLGKLESRKTIVLHVIQDESPRSISTTTETAGKQQGIL
                     DGNQLVIIVGIVCATLLLLPVLILIVKKTKWNKSSVSSIASVKSLENKEKTSSEKHVY
                     SSITTWETAERGPSGESEATYMTMHPVWRSSPKASSLALSSARIK"
ORIGIN      
        1 cctgtttctg tttccacagc caccgcagaa ggcatgcaca tctggtttgc tttgagcctg
       61 acctactgtg ctggcagaag tcccttggtt gctgtaggag atgctgcggc aggggatcgt
      121 ggtgcactgt ttctcctggg cactgtcatc ttgggtgagg acattaaggt agagtgagtc
      181 aaggaccacc agggaaggag tctcctcggg cagtttgtca ttttccaagt ggatttttgt
      241 tgactggaat acagattgaa aacttgaaag catcatgctt tgcctcctga cactgattgt
      301 gatcccagtg gtcctggtct ctgtaggtta tccacagggc ctgccagact tgactgtttc
      361 ctcccttaag ctgagagtgc atgtgggtga atcggccttg atgggatgtg ttgtccagag
      421 cacagaagag aaacctgtgg acaaagtaga ttgggtattc tcgaaagggg agcatgctga
      481 gaatgaatac gtgctgtact actactccag cctcagcgtg cccacggggc gcttccagaa
      541 ccgttcacgt ttggtggggg acctcttacg taacgacggt tctctcctgc tccaagatgt
      601 tcagaaggct gacgagggaa tctacacctg tgaaatccgc ctcaaaaatg aaggctcagt
      661 gtcgaaaaag ttcgtgttac tgcacgtgct accagaggag cctaaagagc tcagagtcca
      721 tgtaggtgat ccaattcaga tgggatgttt tttccggagt acagaagaga gacgggtgac
      781 cagagtgaac tggatgtttt cttcaggaaa gcatgcccag gaggagattg tcttgtccta
      841 tgacttcaac atgcatagtg ggaccttcca gggccagggt cgcttccgca accgtgtaga
      901 cctgacaggt gacatctccc gcaacgatgg ctctatcatg cttcaaacag tgaagaagtc
      961 tgaccaagga gtctacactt gcagcatcta cctggggaag ctggagtcca ggaaaaccat
     1021 tgtgctgcat gtgatccagg atgaatctcc aaggtcaatt tcaacaacta ctgaaactgc
     1081 tgggaaacag caggggatcc tggatgggaa ccagctggtg atcattgtgg ggatcgtctg
     1141 tgccaccctc ttgctgcttc cagttttgat attaattgtg aagaaaacca agtggaataa
     1201 gagttcagtg agttctatcg cttctgtaaa gagcctggaa aacaaagaga agaccagttc
     1261 agagaaacat gtctactcct ccattactac atgggagacg gcagagagag gaccaagtgg
     1321 agagtcagag gccacctaca tgaccatgca cccagtttgg cgttcttccc ccaaagcatc
     1381 cagtttggcc ctctcttcag ccagaatcaa gtaatgcagt tgaaa
//
