LOCUS       NM_001163277            5964 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus janus kinase and microtubule interacting protein
            3 (Jakmip3), mRNA.
ACCESSION   NM_001163277 XM_001057428 XM_001057645
VERSION     NM_001163277.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5964)
  AUTHORS   Diaz-Ruiz,A., Rabanal-Ruiz,Y., Travez,A., Gracia-Navarro,F.,
            Cruz-Garcia,D., Montero-Hadjadje,M., Anouar,Y., Gasman,S.,
            Vitale,N., Vazquez-Martinez,R. and Malagon,M.M.
  TITLE     The long coiled-coil protein NECC2 is associated to caveolae and
            modulates NGF/TrkA signaling in PC12 cells [corrected]
  JOURNAL   PLoS One 8 (9), e73668 (2013)
   PUBMED   24040018
  REMARK    GeneRIF: Data indicate that neuroendocrine long coiled-coil protein
            2 (NECC2) distributes in caveolae, wherein it colocalizes with the
            TrkA receptor, and behaves as a caveolae-associated protein in
            neuroendocrine PC12 cells.
            Erratum:[PLoS One. 2013;8(9).
            doi:10.1371/annotation/55c4c5bd-99e8-435a-94f4-7e151043bb51]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5964)
  AUTHORS   Cruz-Garcia,D., Vazquez-Martinez,R., Peinado,J.R., Anouar,Y.,
            Tonon,M.C., Vaudry,H., Castano,J.P. and Malagon,M.M.
  TITLE     Identification and characterization of two novel (neuro)endocrine
            long coiled-coil proteins
  JOURNAL   FEBS Lett 581 (17), 3149-3156 (2007)
   PUBMED   17572408
  REMARK    GeneRIF: NECC 1 & 2 proteins primarily expressed in
            (neuro)endocrine tissues in vertebrates thus supporting a role for
            these proteins in the regulated secretory pathway.
REFERENCE   3  (bases 1 to 5964)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000001.1.
            
            On or before Jul 16, 2009 this sequence version replaced
            XM_001057645.1, XM_001057428.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMEA5760433 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-244               JAXUCZ010000001.1  203241125-203241368
            245-742             JAXUCZ010000001.1  203257836-203258333
            743-958             JAXUCZ010000001.1  203267796-203268011
            959-1078            JAXUCZ010000001.1  203269309-203269428
            1079-1225           JAXUCZ010000001.1  203270535-203270681
            1226-1357           JAXUCZ010000001.1  203271190-203271321
            1358-1393           JAXUCZ010000001.1  203272817-203272852
            1394-1453           JAXUCZ010000001.1  203273507-203273566
            1454-1582           JAXUCZ010000001.1  203275667-203275795
            1583-1711           JAXUCZ010000001.1  203277016-203277144
            1712-1795           JAXUCZ010000001.1  203277988-203278071
            1796-1858           JAXUCZ010000001.1  203280377-203280439
            1859-1957           JAXUCZ010000001.1  203281243-203281341
            1958-2056           JAXUCZ010000001.1  203282488-203282586
            2057-2110           JAXUCZ010000001.1  203282668-203282721
            2111-2176           JAXUCZ010000001.1  203285800-203285865
            2177-2245           JAXUCZ010000001.1  203286563-203286631
            2246-2323           JAXUCZ010000001.1  203286718-203286795
            2324-2527           JAXUCZ010000001.1  203288881-203289084
            2528-2593           JAXUCZ010000001.1  203290129-203290194
            2594-2666           JAXUCZ010000001.1  203292080-203292152
            2667-3623           JAXUCZ010000001.1  203292661-203293617
            3624-5964           JAXUCZ010000001.1  203308373-203310713
FEATURES             Location/Qualifiers
     source          1..5964
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q41"
     gene            1..5964
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /note="janus kinase and microtubule interacting protein 3"
                     /db_xref="GeneID:365380"
                     /db_xref="RGD:1307177"
     exon            1..244
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     CDS             110..2644
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /note="neuroendocrine long coiled-coil protein 2"
                     /codon_start=1
                     /product="janus kinase and microtubule-interacting protein
                     3"
                     /protein_id="NP_001156749.1"
                     /db_xref="GeneID:365380"
                     /db_xref="RGD:1307177"
                     /translation="MSKKGAGSRAKGDKAETLAALQAANEELRAKLTDIQIELQQEKS
                     KVSKVEREKSQELKQVREHEQRKHAVLVTELKTKLHEEKMKELQAVREALLRQHEAEL
                     LRVIKIKDNENQRLQALLNTLRDGAPDKVKTVLLCEAKEEAKKGFEVEKVKMQQEISE
                     LKGAKKQVEEALTMVIQADKIKAAEIRSVYHLHQEEITRIKKECEREIRRLMEEIRFK
                     DRAVFVLERELGVQAGHAQRLQLQKEALDEQLSQAKEAERHPGSPRRELPYASGAGDA
                     SDHSGSPEQQLDEKDARRFQLKIAELSAIIRKLEDRNALLSEERNELLKRLREAESQY
                     KPLLDKNKRLTRKNEDLSHTLRRIESKLKFVTQENIEMRQRAGIIRRPSSLNDLDQSQ
                     DEREIDFLKLQIVEQQNLIDELSKTLETAGYVKSVLERDKLLRYRKQRKKMAKLPKPV
                     VVETFFGYDEEASLESDGSSISYQTDRTDQTPCTPEDDLEEGMAKEETELRFRQLTME
                     YQALQRAYALLQEQVGGTLDAEREVKTREQLQAEIQRAQTRVEDLEKALAEQGQDMKW
                     IEEKQALYRRNQELVEKIKQMETEEARLKHEVQDAKDQNELLEFRILELEERERKSPA
                     INFHHTPFVDGKSPLQVYCEAEGVTDILVTELMKKLDILGDNANLTNEEQVVVIQART
                     VLTLAEKWLQRIEETESALQRKMVDLESEKELFSKQKGYLDEELDYRKQALDQAHKHI
                     LELEAMLYDALQQEAGAKVAELLSEEEREKLKVAVEQWKRQVMSELRERDAQILRERM
                     ELLQIAQQRIKELEERIETQKRQIKELEEKFLFLFLFFSLAFILWS"
     exon            245..742
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            743..958
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            959..1078
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1225
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            1226..1357
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            1358..1393
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            1394..1453
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            1454..1582
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            1583..1711
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            1712..1795
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            1796..1858
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            1859..1957
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            1958..2056
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            2057..2110
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            2111..2176
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            2177..2245
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            2246..2323
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            2324..2527
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            2528..2593
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            2594..2666
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            2667..3623
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
     exon            3624..5964
                     /gene="Jakmip3"
                     /gene_synonym="Necc2; RGD1307177"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgactgaga agatgtagcg gagtgacacc tgccaagagc ttggcgtgga taccctggcc
       61 cagccggagc agctgcccct gggcgtcttt ctggccatcc agcctcacca tgtcaaagaa
      121 gggtgcaggc agccgggcca agggggacaa agcagagaca ctcgctgcat tgcaggctgc
      181 caacgaggag ctgcgagcca agctcacgga catccagatc gagctgcagc aggagaagag
      241 caaggtcagc aaagttgagc gggagaagag ccaggagcta aagcaggtac gtgagcacga
      301 gcagcgtaag cacgccgtcc tggtcacgga gctcaagacc aagctgcacg aggagaagat
      361 gaaggagctg caggccgtgc gggaggcgct gttgcggcag cacgaggccg agctgctgag
      421 ggtcatcaag attaaggaca atgagaacca gcggctgcag gccttgctca acaccctgcg
      481 ggatggcgcg cccgacaagg tgaagaccgt gctcctgtgc gaggcaaagg aggaggccaa
      541 gaaggggttt gaggtggaga aggtcaagat gcagcaagag atctcagagc tcaagggggc
      601 caagaagcag gtggaggagg cattgaccat ggtcatccag gccgacaaga tcaaggctgc
      661 ggagatcagg agtgtctacc atctgcacca ggaagaaatc acccggatca agaaggagtg
      721 tgagcgtgag atccgcaggc tgatggagga gataagattt aaagacagag cagtcttcgt
      781 gctggaaaga gagttagggg ttcaagccgg gcatgcccag agactgcagc tccagaaaga
      841 ggctctagat gagcagcttt cccaggccaa agaggctgag cggcacccag gcagccccag
      901 acgggaactt ccttatgcaa gcggtgcagg agacgcctca gaccactcag gaagccctga
      961 acagcagttg gacgaaaagg acgccaggcg cttccaactt aaaatcgcgg agttaagtgc
     1021 catcatccgt aagctggaag accgcaacgc cttgctgtct gaagagagga atgagctgct
     1081 aaagcggctg agagaagctg aaagccagta caagccgttg ctggataaga acaagcgcct
     1141 tactcggaaa aatgaagact tgtctcacac cctgcggcgc atagagagca agttgaaatt
     1201 tgtcactcag gagaacatag aaatgaggca gagagcaggg atcatccgga gacccagctc
     1261 cttaaatgac cttgatcaaa gtcaagatga gagagagatt gacttcctaa agctccagat
     1321 tgtggagcag cagaacctca ttgatgagct ttctaagacc ctggagacag caggctatgt
     1381 gaagagtgtg ttggagcgtg ataagctgtt gaggtatcgg aaacaaagaa agaaaatggc
     1441 gaagctcccc aagccagttg tcgtggagac cttctttgga tatgatgaag aagcttccct
     1501 ggagtccgat ggatcttcca tttcttatca aactgacagg acggatcaga ccccatgcac
     1561 ccccgaagat gacctagaag agggtatggc caaggaggag accgagctga ggttccggca
     1621 gctgaccatg gagtaccagg cattgcagcg agcctacgcc ttgctgcagg aacaagttgg
     1681 agggaccctg gatgcagagc gagaagttaa gacccgtgag cagctgcaag cagaaataca
     1741 gagagcacag acacgggtgg aggacctgga aaaggctctg gctgagcagg ggcaggatat
     1801 gaagtggatc gaagagaagc aagcattgta tcgacggaat caagagcttg tagaaaagat
     1861 aaaacaaatg gagacggagg aggcgcggct gaagcatgag gtccaggatg caaaagacca
     1921 gaatgagctg ttggaattca ggatcctgga gctcgaggag agagagagga agtccccagc
     1981 catcaacttc caccatactc cttttgtgga tgggaagagc cccctgcagg tgtattgtga
     2041 ggctgaaggt gtaacggaca tcctggtcac agagctgatg aagaagctgg atatcctggg
     2101 ggataacgcc aatctgacca atgaggaaca agtggttgtc attcaagcca ggacagtcct
     2161 gaccttggca gaaaagtggc tccagaggat tgaagagacg gagtcagcac tacagcggaa
     2221 aatggtagat ctggagagcg agaaggagct gttcagtaag cagaaaggct acctggatga
     2281 ggagctggat tacaggaagc aagccctgga ccaagcccac aagcacatcc tggagctgga
     2341 agccatgttg tatgatgccc tgcaacagga ggccggggcc aaagtggccg agctgctgtc
     2401 ggaagaagag cgtgagaagc tcaaggtggc cgtggagcag tggaagcgtc aggtcatgag
     2461 cgagctgcga gagcgagatg cacagatcct gagagagcgc atggagctgc tacagattgc
     2521 acagcagaga attaaggagt tagaagaaag aatagaaacc cagaagagac aaataaagga
     2581 gctggaagaa aagtttttat ttttgttctt gtttttctcc ctagctttca ttctctggtc
     2641 atagctgttc ttggcaccct gaactgccct ctgcgaaggc gaaggtggac ctttgtcctc
     2701 taacgggacc agagagcagc aggtgccaga gaaagtgtgg gaaattgcat ttcaacactg
     2761 aagactcggg agtgttcagg ctctgcgccc cgccttgtgg aggatgaggg caaaaacact
     2821 gtggcctgca gccactgtcc acttggggtg agccaggact agaactggtc ttgctggcta
     2881 gcgcttctct aagagaagtc tagctttggc tgctggtgac tttcagccca gaaagtaggc
     2941 cctgccccaa tcacagcaat gtgtaatgtt tgttccctgc catgcagggg taaggattgc
     3001 tccgccagtg gagcgatgga gcccacgctg gacacacccc tcgttcccat agtgaccatc
     3061 agtactcttg gaagaagatc tcagaatgcc cagacttgcc cctaatggca agatgaaggc
     3121 tgtggtctca ggggtgaccc tgagtgtcac cctgtagtga cactcactat ggtcctgagc
     3181 acttgctgct ggacacatcc catgcccaac cttgttctgt tacattggca tctctgtgag
     3241 gacagataga gtcatgactt cccgctggcc taccctactc ccagacacaa aggctagaat
     3301 cctatcccca gctgctggcc aggaacacag tggaaagatc agagaagagg ccagggagca
     3361 catgggatga gtacacagag gcctggcctt gaagaatgtg gatcaaagca cagccaaaat
     3421 acggtggagt tgtggccctc ctagcctaga agaccctcag cagatgagcc tcgcctgaga
     3481 gcctcatgtg acaagggcca gtgatgaagg tagcttaaga tggcttcgtc cacagcctgt
     3541 gcacataaga aagggtccag aagagaagat gaacctaagg gtccatgaac ttcggatggt
     3601 agccacagtg cagtggccta cagagagaaa gcagtacagc tatgaggacg gttcaaatga
     3661 ggcttccatc gtgctagatg gtacatccag catccaggaa agtcctccct tgtgtggacc
     3721 ggatgcatcc ttgttgaagg aggctctttc gcccccttca catccctgct agtctaagat
     3781 tgtcaccctc tgtgctgaaa ttaggagggc atgcatgtgc atgtgtgtcc atgtgtgagc
     3841 ttgctcaatg agaagtcagt gcctggatta gagccctttc aaagcaccta gaagttgaca
     3901 caccggatag tgagatatgc agtcaggtgt gaccattaca tccagcattg tatattacaa
     3961 agcccagtgg ccagggggag gaacgagagt gctgtctgaa agcattaggt tcaatttata
     4021 tttgtgtcag gagaaatgtt ccactgtggt gcagatgacc aagtagttat ggacccctag
     4081 gtcaaaatca gagaaaagct tacaggattg gacacatggg cccctttctt cagtggctcc
     4141 aggatttctg ctaggaaatg cattcagtgc tcttggtcct tcccattggc catccatgcc
     4201 cagtcatcga ttctctaact gagtctgatg ttgggtttgg tctttgagtc tgaaattttt
     4261 agtccttagt gcatggtctc ctcttattta aatgacttcc ttctctcagc ccatttgctg
     4321 tactctctga atggcagcaa taggctgtgt cagtgatgct gccacagatc tgtaggtgag
     4381 gggaagccac tgggttagtg accattggac tgtgcaatgc agggacctcg gagctgtctc
     4441 aggtccatgc tgctctctgc ccgccagcac tcctggccca gccccaggtg aacttgcaag
     4501 agaacaggag ctcattagga acaaaaagtt acactggaaa ctcaccccac ctcatacccc
     4561 tagagttcaa ttggatcgtg ggtctgcatg ttgttcgcgt gtccggaata cttcataata
     4621 ccccctgaca ctctaaatta caggtctggg aactttgttg tttttaagaa tggctctaca
     4681 ggaaagaaaa gcatgtaaat aagtaccaac gctcattaag tcgtttctgt ttatgtgtaa
     4741 agtatatgta catagaaagg aaaatggctg agtgaatgct cgataacatc ccacaaacca
     4801 gacggcactt tcacccagct gtattcctga aagcacacgc tgagccggaa ggctgttcct
     4861 ctcctttagg cttcatcgtt tttatccatg tcataagcac catcttgtca cctgatccca
     4921 aagtcagacc tgaactcggg gcaggcgtgg gggagcaaat gtgaacctct gttaccgatt
     4981 cttgctgcca atgagcctct gaggagctca agcacttcaa aacgcaaggt gcattttcta
     5041 aatcccagac tgaatcttct atcccagatg ctgggttgga caggattccc tcctacgttt
     5101 gagcccctgc tgctatctcc taaaacaggg catctgtgtg caatggcact gccctggtga
     5161 agcaagaaga gggaccctga catggccccc agggactcaa actgtaccac tgaggcatgg
     5221 gcctcggctt cacattgcga tgaattgtca gcccgcccac tctgtgtgca cgacatggaa
     5281 tagcataagt atttccgttt gtctaaacta gaaatccacg taaactgcag agccctttgt
     5341 gagcagccct gtggtgtcta ctttgtttcc atggtctagt gttctgttgc ttgaaggcct
     5401 atggctgtga tggaagtctt tgcccttgta gactctgtag ccttcaggaa acctgagtgc
     5461 cttacgcagc ttgtcaacac caactgggag tcaggaggga gggtggagag tggctctgtg
     5521 gcacactgat agctgatcag ttcttgccat cactccgtca ttgaaccctt aagttggggt
     5581 tgtgtgttaa aacacagtga tggatctaag tttaggctca ggaaaaccat attgtgaata
     5641 tatgtatcaa ggcatatatt tattgtacct tttctaaaaa agctttactg taaacttatg
     5701 caaaaaggag cagaactttg cttctggtgg cagagtgcca ggcagtattt gtgtttgacg
     5761 aagcgatctt taacatgccc ctctcaacac gcaacctttc cgttcagtgc tcaacagtat
     5821 tcccaggctt caactaggtt tgtatcgtgg tcaattataa attttacaca tatttttgta
     5881 ttgtggttcc tataatatat accagagaat ttttacttat ttgtaaatta ctgtacagtt
     5941 ttaataaaac ttgttttaaa tcct
//
