LOCUS       NM_001401342            3405 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus influenza virus NS1A binding protein (Ivns1abp),
            mRNA.
ACCESSION   NM_001401342 XM_006249988
VERSION     NM_001401342.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3405)
  AUTHORS   Chen,H.Y., Hu,J.Y., Chen,T.H., Lin,Y.C., Liu,X., Lin,M.Y.,
            Lang,Y.D., Yen,Y. and Chen,R.H.
  TITLE     KLHL39 suppresses colon cancer metastasis by blocking
            KLHL20-mediated PML and DAPK ubiquitination
  JOURNAL   Oncogene 34 (40), 5141-5151 (2015)
   PUBMED   25619834
REFERENCE   2  (bases 1 to 3405)
  AUTHORS   Tsai,P.L., Chiou,N.T., Kuss,S., Garcia-Sastre,A., Lynch,K.W. and
            Fontoura,B.M.
  TITLE     Cellular RNA binding proteins NS1-BP and hnRNP K regulate influenza
            A virus RNA splicing
  JOURNAL   PLoS Pathog 9 (6), e1003460 (2013)
   PUBMED   23825951
REFERENCE   3  (bases 1 to 3405)
  AUTHORS   Guazzi,P., Goitre,L., Ferro,E., Cutano,V., Martino,C.,
            Trabalzini,L. and Retta,S.F.
  TITLE     Identification of the Kelch family protein Nd1-L as a novel
            molecular interactor of KRIT1
  JOURNAL   PLoS One 7 (9), e44705 (2012)
   PUBMED   22970292
REFERENCE   4  (bases 1 to 3405)
  AUTHORS   Wang,J.S., Yuan,C., Wang,K.K., Zhang,H.L., E,S.M., Liu,M.D.,
            Liu,K., Chen,G.W. and Xiao,X.Z.
  TITLE     [Characteristics and expression of Mip5, a novel gene associated
            with myocardial ischemia/reperfusion in rats]
  JOURNAL   Zhong Nan Da Xue Xue Bao Yi Xue Ban 30 (5), 515-520 (2005)
   PUBMED   16320578
REFERENCE   5  (bases 1 to 3405)
  AUTHORS   Fujimura,L., Matsudo,Y., Kang,M., Takamori,Y., Tokuhisa,T. and
            Hatano,M.
  TITLE     Protective role of Nd1 in doxorubicin-induced cardiotoxicity
  JOURNAL   Cardiovasc Res 64 (2), 315-321 (2004)
   PUBMED   15485691
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Feb 9, 2022 this sequence version replaced XM_006249988.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.135632.1,
                                           SRR26360176.2277135.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-204               JAXUCZ010000013.1  65977069-65977272
            205-409             JAXUCZ010000013.1  65981810-65982014
            410-538             JAXUCZ010000013.1  65983438-65983566
            539-708             JAXUCZ010000013.1  65983986-65984155
            709-784             JAXUCZ010000013.1  65984274-65984349
            785-958             JAXUCZ010000013.1  65986237-65986410
            959-1084            JAXUCZ010000013.1  65986944-65987069
            1085-1192           JAXUCZ010000013.1  65988437-65988544
            1193-1322           JAXUCZ010000013.1  65991858-65991987
            1323-1547           JAXUCZ010000013.1  65992193-65992417
            1548-1669           JAXUCZ010000013.1  65992944-65993065
            1670-1796           JAXUCZ010000013.1  65993156-65993282
            1797-1928           JAXUCZ010000013.1  65993363-65993494
            1929-2102           JAXUCZ010000013.1  65993687-65993860
            2103-3405           JAXUCZ010000013.1  65995383-65996685
FEATURES             Location/Qualifiers
     source          1..3405
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q21"
     gene            1..3405
                     /gene="Ivns1abp"
                     /note="influenza virus NS1A binding protein"
                     /db_xref="GeneID:289089"
                     /db_xref="RGD:1306290"
     exon            1..204
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            205..409
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            410..538
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     CDS             428..2356
                     /gene="Ivns1abp"
                     /codon_start=1
                     /product="influenza virus NS1A-binding protein"
                     /protein_id="NP_001388271.1"
                     /db_xref="GeneID:289089"
                     /db_xref="RGD:1306290"
                     /translation="MIPNGYLMFEDENFIESSVAKLNALRKSGQFCDVRLQVCGHEML
                     AHRAVLACCSPYLFEIFNSDSDPHGVSHVKLDDLNPEAVEVLLNYAYTAQLKADKELV
                     KDVYSAAKKLKMDRVKQVCGDYLLSRMDVTSCISYRNFASCMGDSRLLNKVDAYIQEH
                     LLQISEEEEFLKLPRLKLEVMLEDNVCLPSNGKLYTKVINWVQRSIWENGDSLEELME
                     EVQTLYYSADHKLLDGNPLDGQAEVFGSDDDHIQFVQKKPPRENGHKQISGSSTGCLS
                     SPNASVQSPKHEWKIVASEKTSNNTYLCLAVLDGTFCVIFLHGRNSPQSSPTSTPKLS
                     KSLSFEMQPDELLEKPMSPMQYARSGLGTAEMNGKLIAAGGYNREECLRTVECYDPHT
                     DHWSFLAPMRTPRARFQMAVLMGQLYVVGGSNGHSDDLSCGEMYDPSIDDWTPVPELR
                     TNRCNAGVCALNGKLYIVGGSDPYGQKGLKNCDVFDPVTKSWTSCAPLNIRRHQSAVC
                     ELGGYLYIIGGAESWNCLNTVERYNPENNTWTLIAPMNVARRGAGVAVLDGKLFVGGG
                     FDGSHAISCVEMYDPTRNEWKMMGNMTSPRSNAGITTVGNTIYAVGGFDGNEFLNTVE
                     VYNLESNEWSPYTKIFQF"
     exon            539..708
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            709..784
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            785..958
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            959..1084
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            1085..1192
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            1193..1322
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            1323..1547
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            1548..1669
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            1670..1796
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            1797..1928
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            1929..2102
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
     exon            2103..3405
                     /gene="Ivns1abp"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtgtgttcg ggacgcgcgt ggaggtcggt cgctcggagg tgctgggcgc gtcgcggtgg
       61 cgggcgagtt cctgcgagta cccagtggtc tccctctgcc cgcagcctct cgaccggtcg
      121 ccccgcgctc cttccagcgc cttccgcctt cagcccgtcg aagctctgga gatgaatttc
      181 gccatctctt cagagatgac ccagattatg atgcatgatt atcacagaag aaattcatgt
      241 ctatagcttt taaggacttg attacatcat tttcaagcct gatagttttg gaaccaccat
      301 taaagcctaa gacgtctacc ttactcagcc acctgtcttc acaccataac caagtgcttt
      361 gtttcaacac tcctttgtct ttcgacacat ttctcttcag taatagttgc caaatttata
      421 aggaaaaatg attcccaatg gatatttgat gtttgaagat gaaaatttta ttgaatcttc
      481 tgttgccaaa ttaaatgcct tgaggaaaag tgggcaattc tgtgatgttc gacttcaggt
      541 ctgtggccat gagatgctgg cacacagggc agtcctggct tgctgtagcc cctatctatt
      601 tgaaatcttt aatagtgaca gtgaccctca tggagtttct cacgtgaagt tggatgatct
      661 caatccagaa gctgttgaag tcttgctgaa ttacgcatac actgctcagt tgaaagctga
      721 taaggaatta gtgaaagatg tttattctgc agcgaagaag ctgaagatgg accgagtaaa
      781 gcaggtctgt ggagattatt tactatctag gatggatgtt actagctgca tctcttatcg
      841 gaattttgca agttgtatgg gagactctcg tttgttgaat aaagttgatg cctatattca
      901 ggagcatttg ttacaaattt cagaagagga ggaatttctt aagcttccga gactaaagtt
      961 ggaggtaatg cttgaagata atgtttgctt gcccagcaat ggcaagttgt acacaaaggt
     1021 aatcaactgg gtgcagcgta gcatctggga gaatggagac agcctggaag agctcatgga
     1081 agaggttcaa accttgtact actcagctga tcacaagctg cttgatggga acccactaga
     1141 tggacaggct gaggtgtttg gcagtgatga tgaccacatt cagtttgtgc agaaaaagcc
     1201 accccgtgag aatggccata agcagataag tggcagttcc actggatgtc tctcttctcc
     1261 aaatgcttca gtgcaaagtc ctaagcatga gtggaaaatc gttgcttcag aaaagacttc
     1321 aaataacact tacttgtgcc tggctgtgct ggatggtaca ttctgtgtca ttttccttca
     1381 tgggcggaac agtccccaga gctcaccaac aagtactcca aaactgagca agagtttaag
     1441 ctttgagatg cagccagatg agctcctaga aaagcctatg tctcccatgc agtatgcacg
     1501 gtctggactg gggacagcag agatgaatgg caaactcata gctgcaggtg gttataacag
     1561 agaggagtgt cttcgaacag ttgaatgcta tgatccacac acagatcact ggtccttcct
     1621 tgctcccatg agaacaccaa gagcccgctt tcagatggct gtgctgatgg gacagcttta
     1681 tgtggtgggt ggatcaaatg gacactccga tgacctgagc tgtggagaga tgtatgaccc
     1741 gagcattgat gactggaccc ctgtgccaga gctgagaact aaccgttgta atgcaggagt
     1801 gtgtgctctg aatgggaaac tgtacattgt tggtggctct gatccatatg gtcaaaaagg
     1861 cctgaaaaat tgtgatgtat ttgatcctgt aacaaagtca tggacaagct gtgctcctct
     1921 taacattcgt agacaccagt ctgcagtttg tgaacttggt ggttatttgt atataattgg
     1981 aggtgcagaa tcttggaatt gtctgaatac agtagaacga tacaatcctg aaaacaacac
     2041 ctggacttta attgcaccca tgaatgtggc taggcgagga gctggcgtcg ctgttcttga
     2101 tggaaaactg tttgtaggcg gtggctttga tggttctcat gccatcagtt gtgtagagat
     2161 gtatgatcca accaggaatg aatggaagat gatgggaaat atgacttcac caaggagcaa
     2221 cgctgggatc acaactgtag ggaacaccat ttatgcagtg ggaggatttg atggcaatga
     2281 gtttctgaat accgtggaag tctacaacct tgagtcaaat gagtggagcc cttacacaaa
     2341 gatttttcag ttttaacaaa tttcagaacc ccaaactaac aggcttagtg atgtaattgt
     2401 gtgtagtaga ggtacacttg tgaataagga gggtgggtgg ggtagatgtt gctaatggca
     2461 acacaaagct tctgcatatt gcatattatt aaacatgctg tacatacttt ttgtgtttgg
     2521 aacggaatgc aaagatgaag gtctgtttgt gaattcttaa gacatcgttg gttattttac
     2581 tttttgaagg ttgatactgt aaaagaataa accacaaatt gattgggaac atcattttaa
     2641 gaagtccctg ctcctcctca tttgttttgc cgatttgcac attaaatgac tcttccctca
     2701 gttctgtctt aagaggcaag aggggtaggg tttacacgta ggcagttggg cttttaaggg
     2761 ccccttttca ataactggaa cactctataa caagatactt atttaaatag ataacaatga
     2821 ctatttttgt ttttattaaa agaaaagttc acatgcctac caatatttag tcttttatga
     2881 ttacattttt ataacttttt atattctcag cagagtgctt tatctgttga agtaaaatgt
     2941 gacagattca cgttatcaaa gcagagtggc agaggaaagg atgcagagtg gggtgtttct
     3001 tttaaatgct cagaacgcaa acttagcatt tgccgcagct gtcccttttt cttttctgtt
     3061 tgagagtgca gtatcgatgt ttatttggat ggagttgaat agtaacagta ataattcaaa
     3121 cccaggtttg atgaattact gacttactga aacatttaaa ctgtctttat ttatcactaa
     3181 ccaaacaatt gtaagtggaa gcctttgatt gaaacaatta aactgtactg ggtttgtgac
     3241 tgcacccctt ttcagaagtg ttttgttcag ctttcttact cacctggatt gactggttgg
     3301 ggtgactcgg tgtctgtgta gtgctacacc taatttatgg tgcccaaatg agcaaatcta
     3361 atgcttgctg cagatgcaaa cacattaaag gtactttgca gtaaa
//
