LOCUS       XM_039113102            6325 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus intersectin 2 (Itsn2), transcript
            variant X1, mRNA.
ACCESSION   XM_039113102
VERSION     XM_039113102.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113102.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6325
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6325
                     /gene="Itsn2"
                     /note="intersectin 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 41 ESTs, 4 long
                     SRA reads, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 23 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:313934"
                     /db_xref="RGD:1590890"
     CDS             431..5581
                     /gene="Itsn2"
                     /codon_start=1
                     /product="intersectin-2 isoform X1"
                     /protein_id="XP_038969030.1"
                     /db_xref="GeneID:313934"
                     /db_xref="RGD:1590890"
                     /translation="MMAQFPTAMNGGPNMWAITSEERTKHDKQFDNLKPSGGYITGDQ
                     ARTFFLQSGLPAPVLAEIWALSDLNKDGKMDQQEFSIAMKLIKLKLQGQQLPVVLPPI
                     MKQPPMFSPLISARFGMGSMPNLSIHQPLPPVAPITAPLSSATSGTSIPPLMMPAPLV
                     PSVSTSSLPNGTASLIQPLSIPYSSSTLPHASSYSLMMGGFGGASIQKAQSLIDLGSS
                     SSTSSTASLSGNSPKTGTSEWAVPQPSRLKYRQKFNSLDKSMSGYLSGFQARNALLQS
                     NLSQTQLATIWTLADIDGDGQLKAEEFILAMHLTDMAKAGQPLPLTLPPELVPPSFRG
                     GKQIDSINGTLPSYQKTQEEEPQKKLPVTFEDKRKANYERGNMELEKRRQVLMEQQQR
                     EAERKAQKEKEEWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKEIERRES
                     CISFPLMREREWISVYKDRKGFMAELWKPGSCAAKQELERQRRLEWERIRRQELLNQK
                     NREQEEIVRLNSKKKSLHLELEAVNGKHQQISGRLQDVRIRKQTQKTELEVLDKQCDL
                     EIMEIKQLQQELQEYQNKLIYLVPEKQLLNERIKNMQLSNTPDSGISLLHKKSSEKEE
                     LCQRLKEQLDALEKETASKLSEMDSFNNQLKCGNMDDSVLQCLLSLLSCLNNLFLLLK
                     ELRESYNTQQLALEQLHKIKRDKLKELERKRLEQIQKKKLEDEAARKAKQGKENLWKE
                     SIRKEEEEKQKRLQEEKSQDRTQEEERKTEAKQSETARALVNYRALYPFEARNHDEMS
                     FNSGDIIQVDEKTVGEPGWLYGSFQGKFGWFPCNYVEKMLSSDKTPSPKKALLPPAVS
                     LSATSAAPQPLCSNQPAPVTDYQNVSFSNLNVNTTWQQKSAFTRTVSPGSVSPIHGQG
                     QAVENLKAQALCSWTAKKENHLNFSKHDVITVLEQQENWWFGEVHGGRGWFPKSYVKI
                     IPGSEVKRGEPEALYAAVNKKPTSTAYPVGEEYIALYSYSSVEPGDLTFTEGEELLVT
                     QKDGEWWTGSIGERTGIFPSNYVRPKDQENVGNASKSGASNKKPEIAQVTSAYAASGA
                     EQLSLAPGQLILILKKNSSGWWQGELQARGKKRQKGWFPASHVKLLGPSAERTTPAFH
                     AVCQVIAMYDYIANNEDELNFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTT
                     DSDPSQQWCADLQALDTMQPMERKRQGYIHELIETEERYMDDLQLVIEVFQKRMAESG
                     FLTEAEMALIFVNWKELIMSNTKLLKALRVRKKTGGEKMPVEMMGDILAAELSHMQAY
                     IRFCSCQLNGAALLQQKTDEDADFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPL
                     LIRSILENTPQNHVDHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGL
                     AEQLIFNSLTNCLGPRKLLYSGKLYKTKSNKELHGFLFNDFLLLTYLVRQFAASSGFE
                     KLFSSKSSAQFKMYKTPIFLNEVLVKLPTDPSSDEPVFHISHIDRVYTLRTDNINERT
                     AWVQKIKAASEQYIDTEKKKREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSN
                     PYCEISMGSQSYTTRTLQDTLNPKWNFNCQFFIKDLYQDVLCLTMFDRDQFSPDDFLG
                     RTEVPVAKIRTEQESKGPTTRRLLLHEVPTGEVWVRFDLQLFEQKTLL"
ORIGIN      
        1 gcggagcttc ggaacctcgc gggaggagaa gcactttggc ccacgccctc cacggttccg
       61 ggggtgagga ggggcaccac ggagtgtcac gctccccacg gtgaggagtc ggtgccccgc
      121 ggctaggcgg gcgggccgtc actgcccgcc cgtcgctcgc ctccccgccc cccggcttcc
      181 tgcggaggca gcggccgcca tgttgttgtg gggctgaggc ggcgccggcg gagagcccag
      241 cggccgtgac aggctgcgca acaggttcgc tgcggcccgc ctgacgactg acccggcgga
      301 ggcggccacg gcccagcagg gtcttccagg agcctggccg cgccagcgcg ccggggctga
      361 ggagcgcgcg gggtcgcgcc gtgacgtgcg cgaggcgcca gatggctgag agctgcaaga
      421 agtcaggacc atgatggctc agtttcccac agctatgaat ggagggccaa atatgtgggc
      481 tatcacatct gaagaacgta ctaagcatga taaacagttt gataacctca aaccttcagg
      541 aggttatata acaggtgatc aagcccgtac ttttttctta cagtcaggtc tgccggcccc
      601 ggttttagct gaaatatggg ccttatccga tctgaacaag gatgggaaga tggaccagca
      661 agagttctcc atagctatga aactcatcaa attaaagctg cagggccaac agctgccggt
      721 agttctccct cctatcatga agcaaccccc aatgttctca cccctaatct ctgctcgctt
      781 tgggatggga agcatgccca atctgtccat tcatcagcca ttgcctccag tggcacctat
      841 aacagcaccc ttgtcttctg ctacttcagg gaccagtatt cctcccctaa tgatgcctgc
      901 tcccctagtg ccttctgtta gtacatcttc attaccaaat ggaactgcca gtctcattca
      961 gcctttatcc attccttatt cttcttcaac attgcctcat gcatcatctt acagcctgat
     1021 gatgggagga tttggtggtg ctagtatcca gaaggcccag tctctgattg atctaggatc
     1081 tagtagctca acttcctcaa ctgcttccct ctcagggaac tcacctaaga ctgggacctc
     1141 agagtgggca gttcctcagc cttcaagatt aaagtatcgg caaaaattta atagtctaga
     1201 caaaagcatg agtggatacc tctcaggttt tcaagctaga aatgcccttc ttcaatcaaa
     1261 tctttctcaa actcagctag ccactatttg gactctggct gacattgatg gtgacggaca
     1321 gttgaaagct gaagagttta ttctggcgat gcacctcact gacatggcca aagctggaca
     1381 gccgctacca ctcacgttgc ctcctgagct cgtccctcca tctttcagag gagggaagca
     1441 gattgactcc attaatggaa ctctgccttc atatcagaaa acacaggaag aggaaccgca
     1501 gaagaaattg ccagttactt ttgaggacaa acggaaagcc aactatgaac gaggaaacat
     1561 ggagctggag aagcgacgcc aagtgttgat ggagcagcag caaagggagg ctgagcgcaa
     1621 agcccagaaa gaaaaggaag agtgggagcg aaaacagaga gaactacaag agcaagaatg
     1681 gaaaaagcag ctggagttgg agaaacgctt ggagaaacaa agggaactgg agcgacagag
     1741 ggaggaagag aggagaaaag agatagaaag acgagagagc tgcatctcct ttcccttgat
     1801 gagggaaaga gaatggatct ctgtgtataa ggacaggaag ggcttcatgg cagagttgtg
     1861 gaaacctgga tcatgtgcag caaaacagga gcttgaaaga caacggcgtt tagaatggga
     1921 aagaatccgt cgacaggagc ttctcaatca aaagaataga gaacaagagg aaattgtcag
     1981 gctgaattct aaaaagaaaa gtctccacct tgaactggaa gcagtgaatg gaaaacatca
     2041 gcagatctca ggcagactac aagatgtccg aatcagaaag caaacacaaa agactgagct
     2101 agaagttttg gataaacagt gtgacctgga aattatggaa atcaaacaac ttcagcaaga
     2161 acttcaggaa tatcaaaata agcttatcta tctggtacct gagaagcaac tattgaatga
     2221 aagaattaaa aacatgcagc tcagtaacac acctgattca gggatcagct tacttcataa
     2281 aaagtcatca gaaaaggaag aattatgcca aagacttaaa gaacaattag atgctcttga
     2341 aaaggaaact gcatctaagc tctcagaaat ggactcattc aacaatcaac tgaagtgtgg
     2401 gaatatggat gactctgttc ttcagtgcct tttgtctctg ctaagctgtc tcaacaacct
     2461 cttcctctta cttaaggaac tcagagaaag ctataataca cagcaattag cccttgaaca
     2521 acttcataaa atcaaacgtg acaaattgaa ggaactcgaa aggaaaagat tagagcaaat
     2581 tcaaaaaaag aaactagaag atgaggctgc aaggaaagca aagcaaggaa aagaaaactt
     2641 gtggaaagaa agtattagaa aagaagaaga ggaaaaacaa aagcgactcc aggaagaaaa
     2701 gtcacaggac agaactcaag aagaggaacg aaaaactgag gcaaaacaaa gtgagacagc
     2761 ccgtgctttg gtgaattata gagcattgta cccctttgaa gcaaggaacc atgatgagat
     2821 gagttttaat tctggggata taattcaggt tgatgagaaa actgtaggag agcctggttg
     2881 gctttatggt agttttcagg ggaagtttgg ctggttcccg tgcaactatg tagaaaaaat
     2941 gctgtcaagt gacaagactc catctcctaa gaaggcctta cttcctcctg cagtgtctct
     3001 ttctgctacc tcagctgctc cccaaccact ctgttcaaat caaccagcac cggtgactga
     3061 ttatcaaaat gtatccttct caaaccttaa tgtaaacacg acatggcagc agaagtccgc
     3121 tttcacccgc actgtctccc ctgggtctgt gtcccccatc cacggacagg ggcaggctgt
     3181 agaaaacctg aaagctcagg ccctttgttc ctggacggca aagaaagaga accacctgaa
     3241 cttctcaaag cacgacgtca tcaccgtcct ggagcagcag gaaaactggt ggtttgggga
     3301 ggtgcatgga ggaagaggat ggttccccaa gtcttacgtc aagatcattc ctgggagtga
     3361 agtaaagcga ggagagccag aagctttgta tgcagctgta aataagaaac ctacctccac
     3421 agcctatcca gttggagaag agtacattgc actttattca tactcaagtg tggagcctgg
     3481 agacttgact ttcactgaag gagaagaact actggtgacc cagaaagatg gagagtggtg
     3541 gacaggaagt attggagaga gaactgggat cttcccatcc aactatgtca gaccaaagga
     3601 tcaagagaat gttgggaatg ctagcaaatc tggagcatca aacaaaaagc ccgagatcgc
     3661 tcaagtaact tcagcatatg ctgcttcagg ggctgagcag ctcagccttg caccaggaca
     3721 gttaatatta atcctcaaga aaaactcaag tgggtggtgg caaggagagc tacaggccag
     3781 agggaagaag cgacagaagg gatggtttcc tgccagccac gtgaagctgc tgggtccaag
     3841 tgctgagaga accacgcctg cttttcacgc cgtttgtcaa gtgatcgcta tgtatgacta
     3901 catagcgaat aacgaagatg agctcaactt ctccaaagga cagcttatta acgttatgaa
     3961 caaggatgac cctgactggt ggcaaggaga aatcaatggg gtgactggtc tctttccttc
     4021 aaactatgtt aagatgacaa cagactcaga tccaagtcaa cagtggtgtg ccgatctcca
     4081 ggccctggac acaatgcagc ccatggagag gaagcgacag ggctacattc acgagctgat
     4141 tgagacggag gagcggtaca tggatgacct gcagttggtc attgaggttt tccagaaacg
     4201 gatggctgag tcgggcttcc tcactgaggc agaaatggcc ttgatctttg tgaactggaa
     4261 ggaactcatc atgtccaaca cgaagctgtt gaaggccttg cgggtacgga agaagacagg
     4321 gggtgagaag atgccagtcg agatgatggg ggacatcctg gcagcagagc tgtcccacat
     4381 gcaggcctac atccggttct gcagctgtca gctcaatgga gcagccctgc tacagcagaa
     4441 gacagatgag gacgcagact tcaaggagtt tttaaagaag ctggcgtcag acccacgctg
     4501 caaaggaatg cccctgtcca gcttcctgct gaagcccatg cagagaatca ctcgctaccc
     4561 cctgctcatc agaagtatcc tggagaacac tccacagaat catgttgacc actcctccct
     4621 gaaactggcc ctggagcgag ctgaggagct atgctctcag gtgaatgagg gggtccggga
     4681 gaaggagaat tcagatcggc tggagtggat ccaggcgcac gtgcagtgtg aaggcttagc
     4741 tgagcaactt atcttcaact ccctcaccaa ctgcctgggc ccccggaagc ttttgtacag
     4801 cgggaagtta tacaagacca agagcaataa ggagctgcac gggttcctct tcaacgactt
     4861 cctgctgctc acctacctgg tcaggcagtt cgctgcttcc tctggcttcg agaagctctt
     4921 cagctccaag tccagtgctc agttcaaaat gtataaaacg cccattttcc tgaatgaagt
     4981 gttggtgaaa cttcccacag acccttccag cgatgagccc gtcttccaca tttcccacat
     5041 cgaccgtgtg tacaccctcc gaacagacaa catcaacgag aggacagcct gggtccagaa
     5101 aatcaaggcc gcctcagagc agtacatcga cactgagaag aagaagcggg aaaaggctta
     5161 tcaagcccgt tctcaaaaga cttcaggtat tgggcgtctg atggtacatg tcattgaagc
     5221 tacagagtta aaagcctgca aaccaaatgg gaaaagcaat ccgtactgtg aaatcagcat
     5281 gggctcccaa agctatacca ccaggaccct ccaagacaca ctgaatccca agtggaactt
     5341 caactgccag ttcttcatca aggatcttta ccaggacgtt ctgtgtctca ctatgtttga
     5401 cagagaccag ttttctccag atgacttcct gggtcgtact gaagttccag tggcaaaaat
     5461 ccgaacagaa caggagagca aaggccctac cacccgccga ctgctactgc acgaagttcc
     5521 cactggagaa gtctgggtcc gctttgacct gcaacttttt gaacaaaaaa ctctcctttg
     5581 agggtctgga gaagccagca ccaaggaagc tgcccacaga tgggctgggc ctaaagagac
     5641 attttgctct ccttgggcag aggagcatca catggcttca tccatcaaaa agccacactc
     5701 gctgggcctg tattttcttg cacactaaat tgctagcaat ctatgcaaac atgatctttt
     5761 aaacaaacgc cacagcacag tgccttgtac tagtgttaac atgttcagct gcgttcgatg
     5821 ccagggtttc cattttcagg gctataaaag tattatgtgg aaatgaggca tcagacaccg
     5881 gatgttacca cttggcgaat gtgtccactg tggcgttggt gacgttggaa ccattccaca
     5941 ctatgtgacc tctgctgggt cacagcactc aggaggtgaa gggctgagat taaatgctgc
     6001 agccgtgggg catgtgcagc ctgatatgaa atagcaccca cttgtgcact gaataaacag
     6061 aaacttgatc gttttattct gattagattt tatcattttc tgctaagaca atatagtttg
     6121 aagtataagg aggaaagctt gatgtacttt aaatatactg tgaactctaa tgatgtggga
     6181 atatttttca cctttaattt tctgagatat aaattattta tgtgaattct ttgttttgca
     6241 tatttcgtag aacatgcgtc tttaagcttt atcattgcca acatgtacag aaggagaaaa
     6301 taaaggtata cgtttatgaa tgtaa
//
