LOCUS       NM_001402475            4778 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus inter-alpha-trypsin inhibitor heavy chain family
            member 6 (Itih6), mRNA.
ACCESSION   NM_001402475
VERSION     NM_001402475.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN09345329 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on single protein-coding
                                         transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-147               JAXUCZ010000021.1  23180659-23180805
            148-302             JAXUCZ010000021.1  23181880-23182034
            303-413             JAXUCZ010000021.1  23190656-23190766
            414-661             JAXUCZ010000021.1  23199630-23199877
            662-831             JAXUCZ010000021.1  23202579-23202748
            832-948             JAXUCZ010000021.1  23205633-23205749
            949-1120            JAXUCZ010000021.1  23207285-23207456
            1121-2927           JAXUCZ010000021.1  23207888-23209694
            2928-3064           JAXUCZ010000021.1  23209807-23209943
            3065-3157           JAXUCZ010000021.1  23211697-23211789
            3158-3193           JAXUCZ010000021.1  23213124-23213159
            3194-3307           JAXUCZ010000021.1  23213358-23213471
            3308-3685           JAXUCZ010000021.1  23214952-23215329
            3686-4778           JAXUCZ010000021.1  23216624-23217716
FEATURES             Location/Qualifiers
     source          1..4778
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq12"
     gene            1..4778
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /note="inter-alpha-trypsin inhibitor heavy chain family
                     member 6"
                     /db_xref="GeneID:317416"
                     /db_xref="RGD:1595851"
     exon            1..147
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..3897
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /note="inter-alpha-trypsin inhibitor heavy chain H6-like;
                     inter-alpha-trypsin inhibitor heavy chain family member 6,
                     pseudogene 1"
                     /codon_start=1
                     /product="inter-alpha-trypsin inhibitor heavy chain H6
                     precursor"
                     /protein_id="NP_001389404.1"
                     /db_xref="GeneID:317416"
                     /db_xref="RGD:1595851"
                     /translation="MSEWRYLSWVSILLTILLDPTLQGPHGSASSSSKLLMTSYSIHS
                     TVVSRYAHTLVTSVLINPHDEAHEAIFDLNLPRIAFISNFTMTIDNKIYVAEIKEKHQ
                     AKKMYEKAYQQGKTAAHVGVRDRESEKFQISTRLAAGAKVTFALAYEELLQRHQGQYQ
                     LVVSLRPGQLVRKLNVEITVSERTGIAYVHIPPLRPCRVCTNNKTSEGDLPSYTRIQR
                     EETCVRITFSPTLQEQSAFSNSGIMADFTVHYDVVMQDIIGDVQVYGGYFIHYFAPRG
                     LQPVEKNVVFVIDVSGSMFGTKLQQTKKAMDKILSDLQTSDSFNIITFSDTVNIWKAE
                     GSIQATVQNIHNAKNYVSRMEANGWTDINAALLAAASVLNHSNQEPGKGRGVGQIPLI
                     MFLTDGEPTAGETTPSVILSNVRQALAHRVSLFSLAFGDDADFSLLRRLSLENQGEAR
                     RIYEDADAALQLEGLYAEISRPLLADVHLDYLGGLVGASSRARFPNYFCGSELVVAGK
                     VQPGEQELGIHLAARGPNGHLLVAHHNEEATNSSQKAFGCPGKPALNVAHFIRRLWAY
                     VTIGELLKARFQARDTTTRRLLAAKALNLSLEYNFVTALTSLVVVHLEKTNEEAMTQP
                     STTAKTSTVTPSSSNRLGLGAGTAQPASVLKVSSKSRPTKPTLTITSPTMKVPSSKEL
                     GTLGHWSNSLTTSVQPKPQTPAQDSSTLALPTLKMKPLAHVPSNSNDPLPQKPSTSTH
                     QNPSITSLVNSRTHTLPLNPVSPAQPKGGTMKHFNPLTPFKLPVSSDAHPTPDAPSYL
                     QPVSQEPILQSPQNVPQPKSTPTFQIPKHPLHLNSTDLTPKTPPNLPHPKPGNLPKSP
                     KIPSSHKPSVSSLQTSPTLLLSKSRTPTPYSTQIPLPARPRLLVPQSLSTFSTILSSS
                     TSSSSTVATSVPGEPLPSPFTPTLTSLLPTARHWHQQDSLLGPKSTSTLPEAISLHLL
                     PEKLQLLSESVEESKFVESLNPPVFYTFLTPDKDGSPHWDGNSEKIQGVAEHHMDSKE
                     SSKELVKGTWPGIFTFSSSVDGDPHFVIHIPYSDEKICFTLDGRPGDLLKLIEDPKAG
                     LHVSGRLLGAPSRPGHKDQTRTYFHIITITSEKPRAYTITISRSSISVRGEGTLNLPW
                     DQPALVKKPQLELHVASATRLTLRLGSHLNFLILRHQYRHPSTLQLPHLGFYVANGSG
                     LSSSAHGLMGQFQHTDIRLVTGPAGSYLQKPHGLDVPVVLGKRLLKESSRLLPRWTSC
                     WLVKRSHVEQLLGQPYLAYVL"
     exon            148..302
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            303..413
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            414..661
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            662..831
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            832..948
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            949..1120
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..2927
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2928..3064
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            3065..3157
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            3158..3193
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            3194..3307
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            3308..3685
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            3686..4778
                     /gene="Itih6"
                     /gene_synonym="Itih6-ps1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agacattctg catgagaaca gcaggcccag gccagaagtg gtaccatgtc tgaatggagg
       61 tacctcagct gggtcagcat tttgctgacc atcctcttag acccaacact ccaaggaccc
      121 catggctctg cctcatcaag cagcaagttg ttgatgacaa gctactccat acattccact
      181 gtggtgtctc gttatgcaca cactttggtc acctctgtcc tcatcaatcc acatgatgaa
      241 gcccatgaag ccatctttga cctgaatcta ccccgcatcg cctttatctc caatttcaca
      301 atgaccatcg acaataaaat ctatgttgca gaaatcaagg aaaaacacca ggcaaaaaaa
      361 atgtatgaga aagcctatca gcaaggaaag acggctgctc atgtgggtgt cagggaccgg
      421 gaatcagaaa aatttcaaat ctctaccagg ctggcagcag gtgcaaaggt aacctttgcc
      481 ctggcctatg aagaactgct acagcgacac cagggccagt accagttggt ggtaagcctg
      541 aggcctggac agttggtgag gaagctgaac gtagaaatca ctgtgtctga aaggacgggc
      601 atcgcctatg tgcacatacc tccactgagg ccctgccgag tgtgtaccaa caacaagaca
      661 agtgagggtg acttgccctc atacaccagg atacagaggg aagagacctg tgtccgcatc
      721 accttctccc caacactgca agagcagtct gctttctcca actcaggaat catggccgac
      781 ttcaccgtcc actatgatgt ggtcatgcaa gacatcattg gagatgtgca ggtctatggt
      841 ggctatttta ttcattactt tgcccccaga ggcctccagc cagtagagaa gaatgtggtg
      901 tttgttattg atgtgagcgg ctccatgttt ggaactaagt tgcaacagac taaaaaggcc
      961 atggacaaga tcctcagtga tctgcaaacc agtgactcct tcaacatcat caccttttct
     1021 gacacagtta acatctggaa agctgaaggt tcaatccagg ccactgtcca gaatatccat
     1081 aatgccaaaa actacgtgag tcgcatggaa gcaaatggtt ggacggacat caatgcagct
     1141 ctgctggcag ctgcttcagt gctgaaccat agcaaccagg agcctggaaa gggccgtggt
     1201 gtggggcaga ttcctcttat catgttcctg acagatgggg agcccacagc cggtgagaca
     1261 actcccagtg tgatcctttc aaacgtccgt caggcactgg cccacagggt atctcttttc
     1321 agcttggcct ttggagatga cgctgacttc tcactgctac gtcgtttgtc cctggagaac
     1381 cagggagaag caagacgcat atacgaggat gctgatgcag ccctgcaact agagggcctc
     1441 tatgcggaga tttccaggcc tctactagca gatgtgcacc tagactacct gggtggcttg
     1501 gttggggcct cctctagggc ccgtttccct aactattttt gtggctcaga gctggtggtg
     1561 gctggcaagg tgcagccagg tgagcaggaa ctgggcatcc acttggcagc ccgtggccca
     1621 aatggtcatc ttcttgtggc ccaccataat gaagaagcca ccaacagcag ccagaaagcc
     1681 tttggttgcc cagggaaacc tgccctcaat gtggcccact ttatccgccg cctgtgggcc
     1741 tatgtcacta ttggtgagct gctaaaggca cgcttccaag ccagggacac cacaactcgc
     1801 cgtctgctgg ctgccaaagc cctcaaccta tctcttgaat acaactttgt cacagctctg
     1861 acttcactgg ttgtggtgca cctcgagaag accaacgagg aagccatgac ccagccatcc
     1921 actacagcca agacaagcac agtcacaccc tcatccagca acaggcttgg actgggagca
     1981 ggcacagctc aaccagcctc agttctcaag gtctcttcca aatcaagacc cacaaaacca
     2041 accttaacta ttacttcccc tacaatgaag gtgcccagtt ccaaggagct agggacactg
     2101 ggtcattggt ctaatagcct aacaacttca gtacaaccaa agccccaaac tccagcccaa
     2161 gattctagca ccttggcact gccaactttg aagatgaaac ctcttgccca tgtgccttca
     2221 aattctaatg acccattgcc tcagaagccc agtacttcaa cacaccagaa tcctagcatc
     2281 acatcactgg ttaattctag gacacatact ctgcctttga atcctgtgag ccctgcccag
     2341 cccaaaggtg gcaccatgaa acattttaat ccacttactc ctttcaaact ccctgtttca
     2401 tcagatgccc accctacacc agatgcccca tcatacctcc aacctgtatc tcaggaacct
     2461 atattacagt caccccaaaa tgtgccacag cccaaatcta cccccacatt tcagataccc
     2521 aaacacccat tacacctcaa ctccacggat cttactccca agactccccc aaatttacca
     2581 caccctaaac cagggaattt acccaagtct cctaaaatcc cttcatctca taaacctagt
     2641 gtctcatctc tccaaacttc acctacctta ctactttcca agtcccgaac accaactccc
     2701 tatagcaccc aaatcccatt acctgccaga cccaggctac tagttcctca gagcctcagc
     2761 acattctcaa ccatactctc tagttccaca agttccagca gtactgtggc tacctctgtt
     2821 cctggggaac ctctcccttc tccctttacc cctactctga cctctctgct gcccactgca
     2881 agacactggc atcagcaaga ctcgctgcta ggacccaaga gcaccagcac tctcccagaa
     2941 gccatcagtc ttcaccttct cccagagaag cttcagctgc tgtcagagtc agtggaagag
     3001 tccaagttcg tggagtccct gaacccacca gtcttctata ccttcctcac tcctgacaaa
     3061 gatggaagtc cacactggga tggtaattct gagaagatcc agggagttgc tgaacatcac
     3121 atggactcta aggaaagttc taaggagctg gtaaaaggca catggccagg catcttcacc
     3181 ttctcgtcct ctgtggatgg ggacccccac tttgtgattc acattcctta ctcagacgag
     3241 aagatctgct tcacgttgga tgggcgccca ggggacctcc taaagctcat agaggacccc
     3301 aaggcagggc tgcatgtgag tgggcggtta cttggagcac catcaagacc aggtcataag
     3361 gaccagaccc ggacttactt ccatatcatc acaatcactt cagaaaaacc ccgggcatac
     3421 accattacaa taagtcgcag ttctatatct gtgcgaggtg agggcacctt gaacttaccc
     3481 tgggaccaac ctgccctggt gaagaaaccc cagctggagc tccatgtggc ttctgcaacc
     3541 cgtctcaccc tccgccttgg gtcccacctc aacttcctca tccttcgtca ccagtacaga
     3601 caccccagca cactacagct accccatttg gggttctatg tggccaatgg ctcaggcctc
     3661 agctcctcag cccatggcct aatgggacaa tttcaacaca cagacatccg gctggtaaca
     3721 ggacctgctg ggtcttattt acagaagccc catggcctgg acgtgccagt ggtactaggc
     3781 aagagactgc tgaaagagtc gtcaaggcta cttccccgct ggacttcatg ctggctggtg
     3841 aaacgctccc atgtggaaca actgctgggt cagccctacc ttgcctatgt tctgtgatgg
     3901 ctcctgaacc cagagatcca gaggctatgg catggagtca gccatggcac aggcctgggt
     3961 acatgagggt gcacataagg gatatgtacg catgtgctaa gggcaaatat accaggatgc
     4021 gcaaagatac acaaagctgg acagaacttt ggccctaaaa gctttagtat tctttttgcc
     4081 tagtttatag tctctgttac aaatttgcat gatccctaga agtgatttta gtcattgaga
     4141 atttcacaca tgtatatagt atattttgat catatcaagc cccctattcc tcgttctatt
     4201 tgacccacaa tcccccatct ccccttcaac atccccttcc caacttcgtc ttctcttttc
     4261 atagttcact gactgtcgtt cttttttttt tctttttttt cggagctggg gaccgaaccc
     4321 agggccttgc acttgctagg caagtgctct accactgagc taaatcccca accccctgac
     4381 tgtcgttctt aaaatccaaa cctcactgag tgacttagaa tttccccaat aagctgtgat
     4441 cgctggactt ctttatgtat tcatccttct gtgtgggcca tgcttccttt gctctatcta
     4501 ggtaaactca gttcattttt caagtcttac tcatcacttc ccctagaagg cactccctgg
     4561 cccctccatg aggttgaatt tggtgcctgc ttaaagtcct ctccaagctc acagcatttt
     4621 ggatactgtg tgataatcat gtttgctcat ctggatccca gcggaaactg tgagctccca
     4681 gagagcaaga atctattgtg attcctcttc atagccacag atcatggccc atggtatgtg
     4741 cttaataaat atttgtagaa taattgaatg gacaaaaa
//
