LOCUS       NM_001013213            1130 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus integrin subunit beta 3 binding protein
            (Itgb3bp), mRNA.
ACCESSION   NM_001013213 XM_342869
VERSION     NM_001013213.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1130)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1130)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1130)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC086363.1.
            
            On Apr 20, 2005 this sequence version replaced XM_342869.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC086363.1, BP504362.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1130
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q33"
     gene            1..1130
                     /gene="Itgb3bp"
                     /note="integrin subunit beta 3 binding protein"
                     /db_xref="GeneID:362548"
                     /db_xref="RGD:1310044"
     exon            1..334
                     /gene="Itgb3bp"
                     /inference="alignment:Splign:2.1.0"
     CDS             330..860
                     /gene="Itgb3bp"
                     /note="beta3-endonexin; CENP-R; nuclear
                     receptor-interacting factor 3; integrin beta 3 binding
                     protein (beta3-endonexin)"
                     /codon_start=1
                     /product="centromere protein R"
                     /protein_id="NP_001013231.1"
                     /db_xref="GeneID:362548"
                     /db_xref="RGD:1310044"
                     /translation="MPVKRSLKLDDQFEENSFGPSKIMRKKSITAFSPTTGTYQLSPF
                     SSPRTPKEQEHRDGPSNGTRKWSVLSSPARQDSTVKGSDGFMMLLSKIERSSEKTMEI
                     MKNLSSLQALEGNRQLEDLLGVSLVPCSLKSEAKKTKELMTKVMKQKLFEKKNSRIPP
                     KEHHPNSFEFLKAILN"
     exon            335..377
                     /gene="Itgb3bp"
                     /inference="alignment:Splign:2.1.0"
     exon            378..513
                     /gene="Itgb3bp"
                     /inference="alignment:Splign:2.1.0"
     exon            514..580
                     /gene="Itgb3bp"
                     /inference="alignment:Splign:2.1.0"
     exon            581..659
                     /gene="Itgb3bp"
                     /inference="alignment:Splign:2.1.0"
     exon            660..753
                     /gene="Itgb3bp"
                     /inference="alignment:Splign:2.1.0"
     exon            754..813
                     /gene="Itgb3bp"
                     /inference="alignment:Splign:2.1.0"
     exon            814..861
                     /gene="Itgb3bp"
                     /inference="alignment:Splign:2.1.0"
     exon            862..1042
                     /gene="Itgb3bp"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcaccttcca aacgctccga ctagagatct gtggactatt gaccgacaga aaacagtcat
       61 ggcattgtag cttatccttt gggaggctgg tatgtccagg atagtgagag agggtcgtgt
      121 gctgcacgcg gctggggcta gatgggttct ggccttagac ttcctgcacc ctcattttct
      181 tgcacacgtt cgggctcttt ctcgcgtgga gactgtttcg gaggagccgc attcggtgtg
      241 acacctcatt cagtgcttac tacgcgggct ttttacactt ccgcgtttgt ggtttctcaa
      301 ttggttctgt ccagcaacgg agtcccgaaa tgccagttaa aagatcactg aaactggacg
      361 atcagtttga agaaaattca tttggtcctt caaaaatcat gaggaagaaa agtattacag
      421 ctttttctcc aactactgga acttatcaat tgagcccatt ttcctctccc agaaccccca
      481 aagaacaaga gcacagagac ggaccatcaa atggaacaag aaaatggagt gtcttgagct
      541 cacctgcaag acaggactcc acagtgaaag gcagtgatgg attcatgatg ttgctatcta
      601 aaattgagag atcatcggag aaaaccatgg agataatgaa aaatttaagt agtctacagg
      661 ctttggaggg caacagacaa cttgaagatc tccttggtgt ttccctagta ccatgctcct
      721 taaaaagtga agcaaagaaa accaaagagc taatgacaaa agtaatgaaa caaaagctat
      781 ttgaaaagaa aaattcaaga attcctccca aagaacatca tcctaacagc tttgaattcc
      841 ttaaagccat tttgaactga gtgttacctt caagtctgac aactgtgtca acctacctgg
      901 atactagtca accataagaa tgcagacaag actgaagtaa agagtcagtg aaagactgtc
      961 aagtttgcaa cccattttat aagacaggta gaagatatgt tgattattct aaatagaaaa
     1021 aaataaaggc atccgctgta caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1081 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
