LOCUS       XM_039086945            3717 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus integrin subunit alpha E (Itgae),
            transcript variant X1, mRNA.
ACCESSION   XM_039086945
VERSION     XM_039086945.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086028) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3717
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3717
                     /gene="Itgae"
                     /note="integrin subunit alpha E; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 26 long SRA reads"
                     /db_xref="GeneID:83577"
                     /db_xref="RGD:621644"
     CDS             86..3499
                     /gene="Itgae"
                     /codon_start=1
                     /product="integrin alpha-E isoform X1"
                     /protein_id="XP_038942873.1"
                     /db_xref="GeneID:83577"
                     /db_xref="RGD:621644"
                     /translation="MKWFFHALLCVASLKPLGAFNVDVDWSWVTALQPGAPSVLNSLL
                     HQDPSNNQTCLLVARRSSNRNSAVLYRCATSIIPDEIGCQPVEHILMPKGRYQGVTLV
                     RNHNGVLVCIQVQSRKPRSLNSELTGACSLLTPNLDLQAQAYFSDLEGVLDLGASVNS
                     GDYYGSKGGSTGEETKSARRLRRQAVEEEDEEEAGTEIAIVLDGSGSIEPSDFQKAKD
                     FISTMMRNFYEKCFECNFALVQYGGVIQTEFDLLDSRDINASLAKVQSIVQVKEVTKT
                     ASAMQHVLDNIFIPSRGSRKKALKVMVVLTDGDIFRDPLNLTTVISSSKMQGVVRFAI
                     GVGNAFENNNTYRELKLIASDPKAAHTFKVTNYSALDGLLSKLQQRIIHMEGTVGDTL
                     QYQLAQTGFSAQILDKGQVLLGTVGAFNWSGGALLYNTQNGRGRFLNQTAKEDFRAAQ
                     YSYLGYSVAALHKAHGVSYVAGAPRHKLRGAVFELQKEDGEETFMRRIEGEQMGSYFG
                     SVLCPVDINMDGITDFLLVAAPFYHIRGEEGRVYVYRVHEQDAPFSLVYTLSGYPGLT
                     SSRFGFAMAAVGDINQDKFTDVAIGAPLEGFGAGDGASYGSVYIYNGHSGGLHASPSQ
                     QIRASSVALGLYYFGMSVSGGLDFSGDDLADITVGSQDVAVVLRSRPVVDLTVSMTFT
                     PDALPMAFKDKMDVELCFKVDSSAVPSEPGLRGMSLNFTVDVDVTKQKQRLQCADRSC
                     CQSCLMKWSGGSSLCEHFGLISTEEELCEDDCFSNITIKVSYEFQTSEERRNHPNPIL
                     DHYKEPSAIFQLPYEKDCKNKVFCIAEIQLTTAISQQDLVVGITKEVTMNISLTNSGE
                     DSYMTNMALNYPRNLQFKKIQKPLSPDIQCDDPKPVASVLVMNCKIGHPILKRSSVNV
                     SVTWQLEESIFPNRTADITVTISNSNEKSLARETHSLQFRHAFIAVLSRPSVMYMNTS
                     QSSSDHKEFFFNVHGENHFGAVFQLQICVPITLRDLQIIRVKHLTKTQAHTECTQSQE
                     PTCGSDPVQNVEEWHSVICAITSNKENVTVAAEISMGHTKQITVIFLKEEKPHSLPLI
                     IGSSIGGLLVLVVIIAILFKCGFFKRKYKQLNLESVRKAQLKSDSLLED"
     polyA_site      3717
                     /gene="Itgae"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cccctgcaga ggaagggaag ctgagggcct tctgaggttc tctgtgtcgc cccactcagc
       61 tcacacggtt gcgtctgctc cagctatgaa gtggttcttc catgcccttc tctgcgtggc
      121 cagcctgaag cccttgggag ccttcaatgt ggatgtggac tggtcctggg tcacagcact
      181 ccagccaggt gcgccttccg tgctcaactc ccttctgcat caagacccca gcaacaacca
      241 gacctgcctc ctggtagcca gacgcagctc caacaggaat tcagcagtcc tgtatcgatg
      301 tgctacatcc atcattccag atgaaattgg ttgccagcca gtagagcaca tccttatgcc
      361 aaagggcagg taccagggag tgacattggt caggaaccac aatggtgttt tggtatgcat
      421 tcaggtacag tcccggaagc cccgcagcct taactcggag ctcaccggtg cctgcagcct
      481 acttaccccc aacttggacc tccaggcgca agcctacttc tctgaccttg aaggagtcct
      541 ggatctgggt gcatctgtga actctggtga ctactacgga agcaaaggag gcagcacagg
      601 ggaggagacg aaatcagcca ggagactccg acgacaggca gtggaggagg aagacgagga
      661 ggaagctggc accgaaatcg ctattgttct ggatggctca ggaagcattg aaccctcaga
      721 cttccagaag gccaaagatt tcatctctac gatgatgagg aacttctatg aaaagtgttt
      781 tgagtgcaac tttgccctgg tgcagtatgg gggcgtgatc cagactgagt ttgatcttct
      841 agacagccgg gacatcaacg cctcccttgc caaagttcag agcatcgttc aagtgaagga
      901 agtcactaag accgcctcag ccatgcagca tgtcctagat aatatcttca ttccaagtcg
      961 tggctccaga aagaaagcat tgaaggttat ggtggtgctt actgatggtg acatatttag
     1021 ggaccctctc aaccttacga ctgtcatcag ttcctcaaag atgcagggtg ttgtgcgctt
     1081 tgccattggg gtaggcaatg cattcgagaa taataacact tacagagaac tgaagctgat
     1141 tgcctcagac cctaaagcgg cccacacttt caaggtgacc aactactcgg ctctggatgg
     1201 gctgctgagc aagctacagc agaggatcat ccacatggaa ggcacagttg gagacaccct
     1261 tcaatatcaa ctcgcacaga ctggcttcag tgctcagatc ctggacaagg ggcaggtgtt
     1321 gcttggcact gtgggggcct ttaactggtc tgggggcgcg ctgctctaca acacacagaa
     1381 tggtcggggc cgcttcctaa accagacagc caaggaggac ttcagggctg cacagtacag
     1441 ctacctcggt tattcagttg cagcgctaca caaggcccat ggtgtctcct acgtggcagg
     1501 ggctccaagg cacaagctcc gtggggctgt gtttgagctc cagaaggagg acggagagga
     1561 aaccttcatg cgacggatag aaggagagca gatggggtcc tattttggct ctgtgctgtg
     1621 ccctgtggat atcaacatgg atggaatcac agattttctg ctggtggcag ctccatttta
     1681 ccacatccgt ggagaagaag gcagagtcta tgtgtaccgc gtgcacgagc aggatgctcc
     1741 cttctccttg gtatacacac tgagtgggta ccctgggctc accagtagcc gcttcggctt
     1801 tgccatggca gctgtggggg atatcaatca agataaattc acagatgtgg ccattggggc
     1861 ccctctggag ggctttgggg caggcgatgg ggcaagctat ggcagcgtgt acatctacaa
     1921 tggacactca ggtggcctgc atgccagtcc ctcccagcag atcagagcct cctctgtggc
     1981 cttgggactc tactactttg gcatgtctgt gtctggtggt ttagatttca gtggcgatga
     2041 ccttgccgac atcacagttg gctctcagga cgtggcagtt gtgctccgct cacgacctgt
     2101 ggtggacctg actgtgtcta tgacctttac ccctgatgcg ctgcccatgg ccttcaagga
     2161 caagatggat gtagaactgt gcttcaaagt tgactcttca gctgtacctt ctgaaccagg
     2221 ccttagaggg atgtcactaa actttaccgt ggatgtggat gtgaccaagc agaagcagag
     2281 gctgcagtgt gcagaccgga gttgttgtca aagctgcctt atgaagtgga gcggaggatc
     2341 ctctctgtgt gaacacttcg ggctcatctc cacagaggag gagctttgtg aggatgactg
     2401 cttctccaac atcaccatca aggtcagtta tgagttccag acatccgagg aaaggaggaa
     2461 ccaccccaac cccatcctgg accactacaa ggaaccctct gccatcttcc agctgcccta
     2521 tgagaaggac tgcaagaaca aagtgttctg catcgctgag atccagctga ccaccgccat
     2581 ctctcagcaa gacctggtgg tgggtatcac aaaggaggtg accatgaaca tcagcctgac
     2641 taactctggg gaagattctt acatgacaaa catggctctg aattatccca gaaacttaca
     2701 gtttaagaag atacaaaagc cactctctcc agatattcag tgtgatgacc ccaagccagt
     2761 cgcttctgtc ctggtcatga actgcaagat tggtcacccc atactcaaga gatcatctgt
     2821 aaatgtctca gtgacttggc agctagagga gagtatcttt ccaaatagga cagcagatat
     2881 cactgtgacc atctccaatt ccaatgagaa gtctttggcc agagagaccc acagccttca
     2941 attcaggcat gccttcattg cagttctttc cagaccgtca gtgatgtaca tgaacacgag
     3001 ccaaagctct tctgaccaca aagaattctt cttcaacgtg cacggggaga atcactttgg
     3061 agctgtattc cagttgcaaa tttgtgtccc catcacatta cgagatttac agattataag
     3121 agtgaagcat ctgacaaaga ctcaggccca cactgagtgc acccagagtc aagagcccac
     3181 gtgtggaagc gatcctgttc agaatgtgga agaatggcat tcagtgatct gcgctatcac
     3241 atctaataaa gaaaatgtaa ccgtggccgc agagatctcc atgggccaca ctaagcagat
     3301 cacagtcatc ttcctgaagg aggagaagcc acactccctg cctctaatca ttggcagcag
     3361 tatcggaggc ctcctggtcc tggtcgtgat tatagccatt ctgttcaagt gtggcttttt
     3421 caaaagaaaa tataaacagc tgaacttgga gagcgtaagg aaggcacagc tgaagtctga
     3481 cagtctgctc gaagattagc ccctgcttcc tcacctgaag gagggagctt gaggcagtct
     3541 ggaagaagcc cggatacccc ctgtcggggc tccttactct ctttaggaca atctagcaac
     3601 atcaaacaaa ctgtagagtg ttgttcgtag ccacacatta tctccacagt gtctgtgaat
     3661 tgtgaaaaaa gggaaacttg ggacatgcgg taataaataa atttaccttt acagtga
//
