LOCUS       XM_039089555            3514 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus integrin subunit alpha D (Itgad),
            transcript variant X2, mRNA.
ACCESSION   XM_039089555
VERSION     XM_039089555.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089555.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3514
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3514
                     /gene="Itgad"
                     /gene_synonym="Itgax"
                     /note="integrin subunit alpha D; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:64350"
                     /db_xref="RGD:71075"
     CDS             146..3181
                     /gene="Itgad"
                     /gene_synonym="Itgax"
                     /codon_start=1
                     /product="integrin alpha-D isoform X1"
                     /protein_id="XP_038945483.1"
                     /db_xref="GeneID:64350"
                     /db_xref="RGD:71075"
                     /translation="MDIAFLIDGSGSINQRDFAQMKDFVKALMGEFASTSTLFSLMQY
                     SNILKTHFTFTEFKNILDPQSLVDPIVQLQGLTYTATGIRTVVEELFHSKNGSRKSAK
                     KILLVITDGQKYRDPLEYSDVIPAADKAGIIRYAIGVGDAFQEPTALKELNTIGSAPP
                     QDHVFKVGNFAALRSIQRQLQEKIFAIEGTQSRSSSSFQHEMSQEGFSSALTSDGPVL
                     GAVGSFSWSGGAFLYPPNTRPTFINMSQENVDMRDSYLGYSTAVAFWKGVHSLILGAP
                     RHQHTGKVVIFTQEARHWRPKSEVRGTQIGSYFGASLCSVDVDRDGSTDLVLIGAPHY
                     YEQTRGGQVSVCPVPGVRGRWQCEATLHGEQGHPWGRFGVALTVLGDVNGDNLADVAI
                     GAPGEEESRGAVYIFHGASRLEIMPSPSQRVTGSQLSLRLQYFGQSLSGGQDLTQDGL
                     VDLAVGAQGHVLLLRSLPLLKVELSIRFAPMEVAKAVYQCWERTPTVLEAGEATVCLT
                     VHKGSPDLLGNVQGSVRYDLALDPGRLISRAIFDETKNCTLTGRKTLGLGDHCETVKL
                     LLPDCVEDAVSPIILRLNFSLVRDSASPRNLHPVLAVGSQDHITASLPFEKNCKQELL
                     CEGDLGISFNFSGLQVLVVGGSPELTVTVTVWNEGEDSYGTLVKFYYPAGLSYRRVTG
                     TQQPHQYPLRLACEAEPAAQEDLRSSSCSINHPIFREGAKTTFMITFDVSYKAFLGDR
                     LLLRAKASSENNKPDTNKTAFQLELPVKYTVYTLISRQEDSTNHVNFSSSHGGRRQEA
                     AHRYRVNNLSPLKLAVRVNFWVPVLLNGVAVWDVTLSSPAQGVSCVSQMKPPQNPDFL
                     TQIQRRSVLDCSIADCLHFRCDIPSLGIQDELDFILRGNLSFGWVSQTLQEKVLLVSE
                     AEITFDTSVYSQLPGQEAFLRAQVETTLEEYVVYEPIFLVAGSSVGGLLLLALITVVL
                     YKLGFFKRQYKEMLDGKAADPVTAGQADFGCETPPYLVS"
ORIGIN      
        1 tcagagctca gccaaccttc acatggttgg tttattactt tgtgagatga tcagctctat
       61 tcagactttt gctgttggag aggatgcgct agtccatcgt ggagctgggt ggtaccccct
      121 tctctgagag tgtccaagac aagagatgga cattgctttc ctgattgatg gttctggcag
      181 cattaaccaa agggactttg cccagatgaa ggactttgtc aaagctttga tgggagagtt
      241 tgcgagcacc agcaccttgt tctccctgat gcaatactcg aacatcctga agacccattt
      301 taccttcact gaattcaaga acatcctgga ccctcagagc ctggtggatc ccattgtcca
      361 gctgcaaggc ctgacctaca cagccacagg catccggaca gtggtggaag agctatttca
      421 tagcaagaat gggtcccgta aaagtgccaa gaagatcctc cttgtcatca cagatgggca
      481 gaaatacaga gaccccctgg agtatagtga tgtcattccc gccgcagaca aagctggcat
      541 cattcgttat gctattgggg tgggagatgc cttccaggag cccactgccc tgaaggagct
      601 gaacaccatt ggctcagctc ccccacagga ccacgtgttc aaggtaggca actttgcagc
      661 acttcgcagc atccagaggc aacttcagga gaaaatcttc gccattgagg gaactcaatc
      721 aaggtcaagt agttcctttc agcacgagat gtcacaagaa ggtttcagtt cagctctcac
      781 atcggatgga cccgttctgg gggccgtggg aagcttcagc tggtccggag gtgccttctt
      841 atatccccca aatacgagac ccacctttat caacatgtct caggagaatg tggacatgag
      901 agactcctac ctgggttact ccaccgcagt ggccttttgg aagggggttc acagcctgat
      961 cctgggggcc ccgcgtcacc agcacacggg gaaggttgtc atctttaccc aggaagccag
     1021 gcattggagg cccaagtctg aagtcagagg gacacagatc ggctcctact tcggggcctc
     1081 tctctgttct gtggacgtgg atagagatgg cagcactgac ctggtcctga tcggagcccc
     1141 ccattactat gagcagaccc gaggggggca ggtctcagtg tgccccgtgc ccggtgtgag
     1201 gggcaggtgg cagtgtgagg ccaccctcca cggggagcag ggccatcctt ggggccgctt
     1261 tggggtggct ctgacagtgc tgggggacgt aaacggggac aatctggcag acgtggctat
     1321 tggtgcccct ggagaggagg agagcagagg tgctgtctac atatttcatg gagcctcgag
     1381 actggagatc atgccctcac ccagccagcg ggtcactggc tcccagctct ccctgagact
     1441 gcagtatttt gggcagtcat tgagtggggg tcaggacctt acacaggatg gcctggtgga
     1501 cctggccgtg ggagcccagg ggcacgtact gctgctcagg agtctgcctc tgctgaaagt
     1561 ggagctctcc ataagattcg cccccatgga ggtggcaaag gctgtgtacc agtgctggga
     1621 aaggactccc actgtcctcg aagctggaga ggccactgtc tgtctcactg tccacaaagg
     1681 ctcacctgac ctgttaggta atgtccaagg ctctgtcagg tatgatctgg cgttagatcc
     1741 gggccgcctg atttctcgtg ccatttttga tgagactaag aactgcactt tgacgggaag
     1801 gaagactctg gggcttggtg atcactgcga aacagtgaag ctgcttttgc cggactgtgt
     1861 ggaagatgca gtgagcccta tcatcctgcg cctcaacttt tccctggtga gagactctgc
     1921 ttcacccagg aacctgcatc ctgtgctggc tgtgggctca caagaccaca taactgcttc
     1981 tctgccgttt gagaagaact gtaagcaaga actcctgtgt gagggggacc tgggcatcag
     2041 ctttaacttc tcaggcctgc aggtcttggt ggtgggaggc tccccagagc tcactgtgac
     2101 agtcactgtg tggaatgagg gtgaggacag ctatggaact ttagtcaagt tctactaccc
     2161 agcagggcta tcttaccgac gggtaacagg gactcagcaa cctcatcagt acccactacg
     2221 cttggcctgt gaggctgagc ccgctgccca ggaggacctg aggagcagca gctgtagcat
     2281 taatcacccc atcttccgag aaggtgcaaa gaccaccttc atgatcacat tcgatgtctc
     2341 ctacaaggcc ttcctaggag acaggttgct tctgagggcc aaagccagca gtgagaataa
     2401 taagcctgat accaacaaga ctgccttcca gctggagctc ccagtgaagt acaccgtcta
     2461 taccctgatc agtaggcaag aagattccac caaccatgtc aacttttcat cttcccacgg
     2521 ggggagaagg caagaagccg cacatcgcta tcgtgtgaat aacctgagtc cactgaagct
     2581 ggccgtcaga gttaacttct gggtccctgt ccttctgaac ggtgtggctg tgtgggacgt
     2641 gactctgagc agcccagcac agggtgtctc ctgcgtgtcc cagatgaaac ctcctcagaa
     2701 tcccgacttt ctgacccaga ttcagagacg ttctgtgctg gactgctcca ttgctgactg
     2761 cctgcacttc cgctgtgaca tcccctcctt gggcatccag gatgaacttg acttcattct
     2821 gaggggcaac ctcagcttcg gctgggtcag tcagacattg caggaaaagg tgttgcttgt
     2881 gagtgaggct gaaatcactt tcgacacatc tgtgtactcc cagctgccag gacaggaggc
     2941 atttctgaga gcccaggtgg agacaacgtt agaagaatac gtggtctatg agcccatctt
     3001 cctcgtggcg ggcagctcgg tgggaggtct gctgttactg gctctcatca cagtggtact
     3061 gtacaagctt ggcttcttca aacgtcagta caaagaaatg ctggacggca aggctgcaga
     3121 tcctgtcaca gccggccagg cagatttcgg ctgtgagact cctccatatc tcgtgagcta
     3181 ggaatccact ctcctgccta tctctgcaat gaagattggt cctgcctatg agtctactgg
     3241 catgggaacg agttccctac agctctggac tagcctgggg aacgtcccag gcgtgatgtc
     3301 atacctcctg agatgggaga tttttatgct tttgccgaag tgtcagactt cagtgctgat
     3361 ccactttttt ttgcaagagc agggatgggg tcagcataaa tttacatatg gagaagattt
     3421 agcacccaat atagactgac aggagtatgc tcagtatcca atgtgttgct tgtatgtatt
     3481 ttttaaaaaa taaatatgaa aatgcagggg gaaa
//
