LOCUS       XM_039082700            5193 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus integrin subunit alpha 9 (Itga9),
            transcript variant X2, mRNA.
ACCESSION   XM_039082700
VERSION     XM_039082700.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082700.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5193
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5193
                     /gene="Itga9"
                     /gene_synonym="Itga9l"
                     /note="integrin subunit alpha 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     ESTs, 2 Proteins, and 98% coverage of the annotated
                     genomic feature by RNAseq alignments, including 33 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:685004"
                     /db_xref="RGD:1311191"
     CDS             2242..5193
                     /gene="Itga9"
                     /gene_synonym="Itga9l"
                     /codon_start=1
                     /product="integrin alpha-9 isoform X2"
                     /protein_id="XP_038938628.1"
                     /db_xref="GeneID:685004"
                     /db_xref="RGD:1311191"
                     /translation="MGLSKTCAAWVLVGAPKADSKYSTSVKSPGAVFKCRVHTNPDRR
                     CTELDMARERNRGESCGKTCRGDRDDEWMGVSLARQPKADGRVLACAHRWKNIYYETD
                     HILPHGFCYLIPSNLQAKGRMLIPCYEEYKKKYGEEHGSCQAGIAGFFTEELVIMGAP
                     GSFYWAGTLKVLNLTDNTYFKLNDDAIMNRRYTYLGYAVTAGHFSHPSVTDVVGGAPQ
                     DEGIGKVYIFRADRRSGTLIKIFQASGKKMGSYFGSSLCAVDLNMDGLSDLLVGAPMF
                     SEIRDEGQVTVYLNQGHGVLEEQLTLTGDAAYNAHFGESIASLGDLDDDGFPDVAVGA
                     PMEDDFAGTVYIYHGDAQGIVPQYSMKLSGRKINPILQMFGQSISGGIDMDGNGYPDV
                     TVGAFLSDSVVLLRARPVITVDVSIFLPGSINITAPQCHDGQQPVNCLNVTVCFRFHG
                     KNVPGEIGLNYNLTADVAQKEKGQLPRVYFVLLGETAGQVSERLQLTHMDEVCHHYVA
                     HVKRRVQDVISPIVFEAAYSLGEHVIGEEDRELPDLTPVLRWKKGQRIAQKNQTVFER
                     NCRSEDCAADLQLRGKLLLSSVDEKTTHLALGAVKNISLNISISNLGDDAYDANVSFN
                     VSRELFFINMWQKEEMGISCELLESDFLKCSVGFPFMRSKSKYEFSVIFDTSHLSGEE
                     EILSFIVTAQSGNMERSEALHDNTLTLTIPLVHEVDTSITGIVSPTSFVYGESVDASN
                     FIQLDDQECHFQPVNITLQVYNMGPSTLPGSSVSISFPSRLSPGGAEMFQVQDMVVSQ
                     EKGNCSLQRNPTPCIIPQEQENIFHTIFAFFSKSGRKVLDCEKTGSFCLTLHCNLSAL
                     PKEESRAIDLYMLLNTEILKKDSSSVIQFMARAKVKVEPALRVVEIANGNPEETLVVF
                     EALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYKEIIEAEKNRKEN
                     EEAWDWVQKNQ"
ORIGIN      
        1 ctggagtgag acctgtgtga ggtcaacaga gcctgggaca aaggcttttc acttacacaa
       61 gcccctactg cagccccagg tttactttta tgcctatatg ttaagaaaat cttagaggta
      121 gccatgggtc tagtcttgtg aaatctgcgt tgaccctcaa tctttgcctt aacttaacaa
      181 ctctagggtc ggttgattga cttaatgact gaatgtaagt ctcttagtat taggtagttc
      241 ccgaccattg tcctctaaac ttcctgggtc gtttccagtt gcttataatt gtaataacat
      301 atgtaagcat tcttacagtg aaacgctgtg gacgttctta attatttcct cccaatcaat
      361 tcctggaatc agaattcctc agtcagctag aatgacagtt ttacagtatt ctgtattgta
      421 ttacaaaggt tcctgtgaag tgggaaacac gggggatttg ggtcttggag tttagtagct
      481 gtttagccaa agggtggtgt ggtgcagaga gtgggagagc agagaaaact tggtggagta
      541 gcttagaaag ttcacagtct aaagtgggga gagaagaggt gtctccagga gaaacaacga
      601 tgaaacctgg gtaggaaaga tggctaacgt taagtaaaca ttgtatcttc tgttcctctt
      661 ccagatgaaa tggtctttag tttatcagtt gtgatgtgat ttgggacctt cgcttcatgc
      721 taactagctc tgggttgtat tgtgcacagg gcagagagaa tgtgctggaa aggacaggga
      781 gaacccagac accaggtggc agagctgagg gatccaggtc gtggtaccag ttcctgttac
      841 tgtaacacac acctgagtta gaaaacttac aaagagcaga ggttcctttt ggcaagattc
      901 tgactggagg cgatggttgt tggccctgat gctttttagc tctgtcagga tcagggctgc
      961 atcattgtgg aagttcatga agggcaaaaa tagagaaaga ggcaggggct gggctgtcct
     1021 ttttaaagag tgagacttcc cacaggccta accccataaa ggtttaccac cactcagcag
     1081 tgttaaactg gacctgagcc tgcaccacag gatgttttac aagacccaca ggcgtgtgtg
     1141 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgacagag cacatgaagt
     1201 gtctctgcgg tgaaactgtc agctctttgg tctgtagcca agtgctttat gaactcaaat
     1261 tgttccttct tgagggaggt caatgcccgc atgaaaacag gggggacctt gcctctcaga
     1321 acccctgtgt tgagtctggc tcccgaaacc atactcccat tcatgacaca accagaccca
     1381 gccttgttca aagtacttct tgaacagacc cttgtcaccg tgccttggtc agcaagaatt
     1441 gtccctgtgg ataaaccata agaacccgat ggcattggta ccagttttga tgcagacatg
     1501 aaagtgaccg agcttttttt ccctttcttc tgatgatacc cagagagcgt ctgcacactc
     1561 agaactctcc cgtccctccc ctccccaacc ctgattcttc tggcatcctt tgaacaacag
     1621 gagtaggtgc cagggaacat agacaaagcc aatttctgtc cccttctcta gcagtttctc
     1681 agctgcagaa cggacaactg tgacactctg agatataaat aaatggagtc tggctgcccc
     1741 agcacccccc ccccctcgcc cccgacgctc tggagtccaa agtggttggg tgcgctggct
     1801 tcctctctgg cgacgtgctt cctgcttctc ctgggacagc aagactgccg tgctcaggca
     1861 ctgagcgagc tctcggaagt ggcaggctgg cagggcatca ttgagtgagg agtcagtcgg
     1921 agcaactcca gcgttccgtt tgcatttaga gctgaggagt caaagttctg atgtgctgcc
     1981 aggtgacgtg gccacctgcc ggggtattgt gatttacaga aaagtggact aaaactagac
     2041 agaattaaga atccagctca cagtcatgaa tgagaggtca cgtggttgtg tctggggcag
     2101 tccgaatagg gaaatgttta tcagccccag aaggttctac tgactaaagt cttaaagagt
     2161 taggaaaggc ttgaaggaaa ctcaaaagca acaacaagag ggtcagtcct tagcatattt
     2221 aactattaaa accccaggag catgggctta tcaaaaactt gtgcagcatg ggtcctcgtg
     2281 ggtgcaccaa aggcagattc taaatacagc acttcagtaa agtcccctgg agctgtgttt
     2341 aagtgtcgtg tccataccaa ccctgaccgg agatgcaccg agctggacat ggctcgagag
     2401 aggaatcgtg gcgagtcctg tgggaagacc tgcaggggag acagggatga tgagtggatg
     2461 ggagtgagcc tggcccggca gcccaaggca gatggccgtg ttttggcctg tgcccatcgt
     2521 tggaagaaca tatactacga aacagaccac atcttgcccc atggattctg ttacctcatc
     2581 ccatccaacc tccaggccaa aggcaggatg ctgatcccct gctatgaaga gtataagaag
     2641 aagtatgggg aggaacatgg ctcctgccag gccgggatag caggcttctt cactgaggag
     2701 ctggtgatca tgggcgctcc gggctcattt tattgggcag ggacactcaa ggtgctgaat
     2761 ctcacagaca acacgtattt taagctgaac gatgacgcta tcatgaacag acggtatact
     2821 tacctgggct atgcagtgac cgccggccat ttctctcatc cgtctgtcac tgacgtggta
     2881 ggaggtgccc cacaggatga aggcattgga aaggtttata tatttagagc tgaccgaaga
     2941 tcagggacct taataaagat cttccaggca tcagggaaaa agatgggatc ttacttcggc
     3001 tcctccttgt gcgcagtaga cctgaacatg gatggtctct ccgacctgct cgtgggggcc
     3061 cccatgtttt ctgagatcag agatgagggg caggtcaccg tctacctcaa ccaaggacac
     3121 ggagttcttg aggaacagct gaccctgact ggagatgctg cctacaacgc acactttggg
     3181 gagagcatcg ccagcctggg tgaccttgat gatgacgggt tcccagatgt ggctgtcggg
     3241 gcgcctatgg aggatgactt tgctggcaca gtctatatct accatggtga tgcccagggg
     3301 attgtccccc agtactcgat gaagctgtct gggaggaaga taaacccgat cctacagatg
     3361 tttgggcagt ccatatcggg gggcattgac atggacggaa atggctaccc tgatgtcacc
     3421 gtcggagcct tcctgtccga cagcgtggtt ctcctcaggg ccagaccggt catcactgtg
     3481 gatgtctcca tcttcctgcc gggctccatc aacatcacag cacctcagtg tcacgatgga
     3541 cagcagcctg tgaactgcct gaatgtcacg gtgtgcttcc gattccacgg caagaacgta
     3601 ccaggagaaa tcggtctgaa ctacaatctg acggctgatg tggcacagaa ggagaagggc
     3661 cagctgccca gggtctattt tgtgttgctg ggagagactg cagggcaggt ctcggagagg
     3721 ctgcagctga cccacatgga tgaggtgtgt catcactacg tggcccacgt caagcggaga
     3781 gtccaggatg tcatcagccc cattgtgttt gaagctgcct acagcctggg tgagcacgtg
     3841 attggtgagg aggaccggga gctgccagac ctgacaccag tgcttcgctg gaagaaggga
     3901 caaaggattg ctcagaagaa ccagacagtc tttgaaagga attgccgctc tgaggactgt
     3961 gctgctgatc tgcaacttcg ggggaaactg ctgctttcca gtgttgatga gaagaccaca
     4021 cacctggctt tgggggcggt gaagaacatc tctctgaaca tctccatctc caaccttgga
     4081 gacgacgcct acgacgccaa tgtgtccttc aatgtctcca gggagctctt cttcatcaac
     4141 atgtggcaga aggaggagat gggcatttcc tgcgagctgc tggaatcaga cttcctcaag
     4201 tgcagtgtgg gatttccctt catgaggtca aagtctaagt atgaattcag tgtcatcttt
     4261 gatacaagcc acctgtctgg agaagaggaa attctcagct tcatcgtgac tgctcagagc
     4321 ggcaacatgg agcgctctga agccctgcat gacaacactc tcacactgac aataccactg
     4381 gtgcatgaag tggacacgtc catcactgga attgtgtccc caacctcctt cgtgtatggc
     4441 gagtctgtgg acgcatccaa cttcattcag ctggatgacc aggagtgcca cttccaacca
     4501 gtcaacatca ctctccaggt ctacaacatg ggccccagca cccttcctgg gtcttctgtc
     4561 agcatctcct tccccagccg gctgtcacct ggtggtgcag agatgtttca ggttcaggac
     4621 atggtggtga gccaagagaa gggtaactgc tccttacaaa ggaacccaac cccctgcatc
     4681 atccctcaag aacaagaaaa catcttccac accatatttg cttttttctc caagtccgga
     4741 agaaaagtgt tggactgtga aaagacaggg agcttctgcc taacactgca ctgcaacctt
     4801 agcgccctcc ctaaagagga gagccgcgcc atcgacctgt acatgctact gaacacggag
     4861 attctgaaga aggacagctc ctctgtcatc cagttcatgg ctcgagccaa ggtgaaggtg
     4921 gagcctgctc tgagagtggt ggagatagct aacgggaacc cagaagagac tctggtggtc
     4981 ttcgaggcct tgcacaacct ggaaccccgt ggctacgtcg tgggctggat catcgccatc
     5041 agtttgctgg tggggatcct catttttctg ctgctggctg tgctgctgtg gaagatgggc
     5101 ttcttccgta gaaggtacaa agaaatcatc gaagctgaga aaaaccggaa agagaatgaa
     5161 gaggcttggg actgggtcca gaagaaccag tga
//
