LOCUS       XM_039104096            7104 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus integrin subunit alpha 6 (Itga6),
            transcript variant X2, mRNA.
ACCESSION   XM_039104096
VERSION     XM_039104096.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104096.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7104
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7104
                     /gene="Itga6"
                     /note="integrin subunit alpha 6; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 51 ESTs, 7 long SRA reads, 6 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 37 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:114517"
                     /db_xref="RGD:621633"
     CDS             1464..4736
                     /gene="Itga6"
                     /codon_start=1
                     /product="integrin alpha-6 isoform X1"
                     /protein_id="XP_038960024.1"
                     /db_xref="GeneID:114517"
                     /db_xref="RGD:621633"
                     /translation="MAVAGQLCLLYLSAGLLARLSTAFNLDTREDNVIRKSGDPGSLF
                     GFSLAMHWQLQPEDKRLLLVGAPRAEALPLQKANRTGGLYSCDITSRGPCTRIVFDND
                     ADPMSESKEDQWMGVTVQSQGPGGKVVTCAHRYEKRQHVNTKQESRDIFGRCYVLSQN
                     LRIEDDMDGGDWSFCDGRLRGHEKFGSCQQGVAATFTKDFHYIVFGAPGTYNWKGIVR
                     VEQKNNTFFDMNIFEDGPYEVGGETDHDESLVPVPANSYLGFSLDSGKGIVSKDDITF
                     VSGAPRANHSGAVVLLKRDMKSAHLLLEYIFDGEGLASSFGYDVAVVDLNADGWQDIV
                     IGAPQYFDRDGEVGGAVYVYINQQGRWSNVKPVRLNGTKDSMFGIAVKNIGDINQDGY
                     PDIAVGAPYDDLGKVFIYHGSPTGIITKPTQVLEGTTPFFGYSIAGNMDLDRNSYPDV
                     AVGSLSDSVTIFRSRPVINILKTITVTPSRIDLRQKSMCGSPSGICLKVKACFEYTAK
                     PSGYNPPISILGILEAEKERRKSGLSSRVQFRNQGSEPKYTQELTLNRQKQRACMEET
                     LWLQENIRDKLRPIPITASVEIQEPSSRRRVNSLPEVLPILNSNEAKTVQTDVHFLKE
                     GCGDDNVCNSNLKLEYKFGTREGNQDKFSYLPIQKGIPELVLKDQKDIALEITVTNGP
                     SDPRNPRKDGDDAHEAKLIATFPDTLTYSAYRELRAFPEKQLSCVANQNGSQADCELG
                     NPFKRNSSVTFYLILSTTEVTFDTTDLDINLKLETTSNQDNLAPITAKAKVVIELLLS
                     VSGVAKPSQVYFGGTVVGEQAMKSEDEVGSLIEYEFRVINLGKPLKNLGTATLNIQWP
                     KEISNGKWLLYLMKVESKGLEQVVCEPHNEINFLKLKESHNSRKKRELPEKQIDDSRK
                     FSLFSERKYQTLNCSVNVRCVNIRCPLRGLDSKASLVLRSRLWNSTFLEEYSKLNYLD
                     ILVRASIDVTAAAQNIKLPHAGTQVRVTVFPSKTVAQYSGIAWWIILLAVLAGILMLA
                     LLVFLLWKCGFFKRSRYDDSVPRYHAVRIRKEEREINDEKHTDNPEKKWPPKWNENES
                     YS"
ORIGIN      
        1 aggattcaag tttcgaaaca cggttgccag agcctcctta gaaatactga ctgttgggga
       61 aataaaagga aattgaggaa gctaaagagg tgctttatca tagataaaat gacgaagtgg
      121 gagcttggac agtgaacctc atggagaacc aacagctcat gcctctggta gagccgctct
      181 ctggaaatga agctctcttg gctttgtatc tccaactgtt ctgcacaaat gaaccaaact
      241 gggaatcagt tggagtcagt gaagctgaac acaactccag ccattgtctc catggctccc
      301 acgaaacccc agtgccaaac tgattagatt cacagttcat ttcgataagc ttgtctgctc
      361 atggcacaca gaaggcagcg aagcctttca caaaatgaga gctgcagagg gaaaacacac
      421 aagttgttta atgaagaggg aggcttctgt gaggatcatg gacgttttct cgaccactgc
      481 ctcgtgctgc actctttggt ttctgtgctg aaatgatatt cggggatttg ccttcctgtt
      541 aaccacgaag tctgcaattt tttgcagggc tgtcctggaa gtcaccatgt agaccaggct
      601 ggctttaaac tccccaagat ccgtttgtct ttgatccgta acccctggga ttaaagggtc
      661 ccttgtagcc caagtggact tacactatct actgagggca gcctcgaact ctgttcctcc
      721 tgtctccagc tcatgagcgc taggatttga ggcccgtgtc ttcacaccca gcttcagatg
      781 caaagatcct gaaggcatgt gaagcaaaga gaaacccact tctaggattg aatgaaacag
      841 atgagtgtac ttttaagtag tacagcatta cggaagtgtg taccagcgca acgttttctg
      901 cgcttgggtc cctagggagc atcaacccaa ccccaagagc tgggcacagt taggcgcgtc
      961 ttgaactctt ggagaatggt aagtctttgc aagtcagcct cgaggctcgg agaactgctg
     1021 gattcaggaa cctcggccgg cctttcaatg acaggtagga agactcagcc ttgcagggct
     1081 ccgggacgct tccgggcagg tggcggggaa ggtgggaggg ctgtggccgg cgcgcccctg
     1141 tggggcgggg ccggcgagga aggtgcgtgt ggcgggcggg gcctagggag gggtggggcg
     1201 gggcggggcg gggctggagt ccccgtcact cgataaaacg ccggagagtc tccagagaac
     1261 aacgggctca ttgagcggct gctagctacc ggcgtggggg agctgccgga cagagagcgc
     1321 gagccggccg ggggtggggc cgcgcgcagg ggcgacccag gccaagtggc cacagcggcg
     1381 cgccagggag cccggccccg gccccgagcc cgcgcgcaca gaggccgtag cagctccgcg
     1441 ggtccctccc accgcgcgcg cccatggcgg tcgccggcca gttgtgcttg ctctacctgt
     1501 ccgcagggct tctggcccgg ctgagcacag ctttcaacct ggatacccgc gaggacaacg
     1561 tgatccggaa atcgggggat cccgggagcc tcttcggctt ctcgctcgcc atgcactggc
     1621 agttgcagcc ggaggacaag cggctgttgc ttgtgggggc acctcgggca gaagcacttc
     1681 ccctgcagaa ggcgaacaga acagggggcc tgtacagctg tgacatcacc tcccggggac
     1741 cttgcacacg aattgtattt gataatgatg ctgatcctat gtcagaaagc aaggaagacc
     1801 agtggatggg agtcactgtc cagagtcaag gtccaggggg caaagtggtg acgtgtgcgc
     1861 atcgatacga gaaacggcag cacgttaaca cgaagcagga gtcccgggac atcttcggaa
     1921 ggtgttacgt cctgagtcag aatctcagaa ttgaagatga tatggatgga ggagactgga
     1981 gtttctgtga tggccgattg aggggccatg aaaaatttgg ctcttgtcag caaggagtag
     2041 cggctacttt cactaaagac tttcattaca ttgtttttgg agccccaggg acttacaact
     2101 ggaaagggat cgttcgtgta gaacaaaaga ataacacttt ttttgacatg aacatctttg
     2161 aagatgggcc ctatgaagtt ggtggagaga ctgatcatga cgaaagtctc gtgcccgttc
     2221 ctgctaacag ttatctaggc ttttctctgg actcagggaa gggtattgtt tctaaagatg
     2281 acatcacttt tgtatctggt gctccaagag ccaatcacag tggggctgta gttttgctaa
     2341 aaagagacat gaagtcagca catcttctcc ttgagtatat atttgatggt gaaggcctgg
     2401 cttcttcgtt tggctatgac gtggcggtgg tggacctcaa tgcagatggg tggcaagaca
     2461 tcgttatcgg agcgccacag tactttgaca gggatggcga agtcgggggt gcggtgtacg
     2521 tctacattaa ccagcaaggc agatggagta atgtgaagcc agttcgtcta aatgggacca
     2581 aagactcgat gtttggaatc gcagtgaaaa atatcggcga tattaatcaa gatggctatc
     2641 cggatattgc tgttggagct ccctatgacg atctggggaa ggtttttatc tatcatggat
     2701 ccccgactgg cataattacc aagccaacac aggttcttga gggtacaacg cctttcttcg
     2761 gctactcaat cgctgggaac atggacctgg acaggaattc ctaccctgac gttgctgtgg
     2821 gttccctctc agactcagta actattttca gatcccggcc agtgattaac attctgaaaa
     2881 ccatcacagt gactcctagc agaattgacc tccgccagaa atccatgtgt gggtcaccta
     2941 gcgggatatg cctcaaggtt aaagcctgtt ttgaatatac tgcgaagccc tccggttata
     3001 accctccaat atcaattttg ggtattcttg aagctgaaaa agaaagaaga aagtcagggt
     3061 tgtcgtcaag agttcagttt cgaaaccaag gttctgagcc aaagtatact caggagctga
     3121 ccctgaacag gcagaagcag cgggcatgca tggaggagac gctctggctg caggaaaaca
     3181 tcagagacaa gctgcgcccc atccccatca cggcttctgt ggagatccag gagcccagct
     3241 ctcgacggcg ggtgaattca cttccagaag ttcttcccat cttgaattca aatgaagcca
     3301 aaacagtgca gacagatgtc cacttcttaa aggaaggatg tggagacgac aatgtctgta
     3361 acagcaacct taagctagag tataaatttg gtacccgaga aggaaatcaa gacaaattct
     3421 cttaccttcc aattcagaaa ggcatcccag aattagtcct aaaagatcag aaagatatag
     3481 ctctggaaat aacggtgacc aacggccctt ctgatccaag gaatccccgg aaagatggtg
     3541 acgatgccca cgaagccaaa ctcatcgcaa cgtttccaga caccctgaca tattccgcct
     3601 acagagagct gagggctttc cctgagaagc agctgagctg tgttgccaac cagaatggct
     3661 cccaagctga ctgtgagctc ggaaatcctt tcaagagaaa ttccagtgtt actttttatc
     3721 tgattttaag taccaccgag gtcacctttg acaccacaga tctggatatt aatctgaagt
     3781 tggaaacaac aagcaatcag gataatttgg ctccaattac agcgaaagca aaagtggtta
     3841 ttgaattgct tttatcggtc tctggagtcg ctaagccttc gcaggtgtat tttggaggta
     3901 cagttgttgg tgagcaggcc atgaagtctg aagatgaagt aggaagttta atagagtatg
     3961 aattcagggt gattaacttg ggtaaacctc ttaaaaacct cggcacggca accctgaata
     4021 tccagtggcc caaggagatt agcaatggca aatggttgct ttatttgatg aaggtcgaat
     4081 ccaaaggttt ggagcaggtt gtctgtgagc cacacaatga aataaacttc ctcaagctga
     4141 aggagtctca caactcaaga aagaagcggg aacttcctga aaaacagata gacgacagca
     4201 ggaagttttc tctattttcc gaaagaaaat accagaccct caactgcagc gtcaacgtga
     4261 ggtgtgtgaa catcaggtgt ccactgcgag ggctggacag caaggcctct ctcgttctac
     4321 gctccaggct gtggaacagc acgtttctag aggaatattc caaactgaac tacttggaca
     4381 tcctcgtgag ggcgtccata gatgtgaccg ccgccgctca gaatatcaag ctccctcatg
     4441 cgggcactca ggttcgagtg acggtgtttc cctcaaagac ggtagctcag tattcaggga
     4501 tagcgtggtg gatcatcctc ctggctgtgc ttgccgggat tttgatgctg gctctattag
     4561 tgtttttact gtggaagtgt ggattcttta agcgctctag gtacgatgac agtgttcccc
     4621 gataccatgc ggtgcggatt cggaaagaag agcgagagat caacgacgag aaacacactg
     4681 ataaccccga aaaaaagtgg cccccgaagt ggaatgaaaa cgaaagttac tcatagagga
     4741 gggtgtagga aagaaagcct cactgcccaa agcccccctt atttttccca gctcagaaat
     4801 ccaggtgact tcaaagcctg ctcagcgccc cgtatatgag actgactaca cccaggacgg
     4861 acctacagtt tcaactgtgg atattgttac acctcaggct cctgttttgc acagccaagt
     4921 ttaagactag tagagtggat ttttctttaa ctgccttaat ttaactttcc ggattgcctt
     4981 ggtttttgat gtggctgatt tccacacact ggggcagggc ctgcccatct gcattcccgg
     5041 gacgttctct ccccgccatc atctgtgcta acagagtggc cattccagcc tgctcccaca
     5101 gcatccttct cataagactg gagaacctgc aagatgatgt ttcttggctc aagactctgc
     5161 caatggatag ctttgcctct attgaaagtt ctgtcttaaa ttaaatatgc agtagaaggt
     5221 gttgttaccc tttggccttc tctctccatt tcctagaagt gaggaccctt gctgatgcca
     5281 aatgcacaca ggttcctgtc tcccttgtca ctaaggcaca ggttcgacag acttgaatgc
     5341 tagttacact tgtttgtata tgatatttat tttttcttca agccatcttg ctgttgacta
     5401 gtaggccaaa gatgcttcag gttgattaag caatgagaag agaacctggg aggtcgtttt
     5461 tttttgttct gaccttaact atttactgca aaaagaaaaa gttctttatt aacatgcaag
     5521 ggttgtttga ataacttaaa ctcacctgta aatgatacca tctcctttct ggcaggccct
     5581 ccccccaacc cagaaagtct gacgaagcgg ggttgactgt aggacgtttc gtccttcccc
     5641 agcgttgggt atatggtttt gagccctgtg tggaacttct gaacttcgtg ctgtaacttt
     5701 cagaactctt agaggtgagc gtgctcaccg aactctaggg tctgtgtgct caatgctgcc
     5761 aacactgtgt attcaggacc tgacgtgagt acccatgtgg atccagacca atccagtgtg
     5821 agactactga agagcatctg tcgccaaaac agccgtacca gacagacaga atgccacgca
     5881 cggcacctag cttcttaaat atcattggac tcattcaacc agcaagcccc atgtttgctt
     5941 tttttcctaa tcgttcaccg aatctaaatt cctccaggtg acttgtgact actacgataa
     6001 gacttttagg cctggagcag gaggtttagc tcattgcaaa cgtgcttgcc tagcgtgcct
     6061 gggcccgcct tggttggttg gttgtaaaaa tgataggagg gggaaaacaa ttattttttt
     6121 ttatatatag tcaacagaga ttgaatatat tatcaaaact ttttttaaat tgtgttttac
     6181 aatcattaag ttatatggaa ggcaaccgag agctggtgct aattggtttg gataagcagt
     6241 tctcgatctt attttaaaac ttggtctcaa gtaacccagg ctggccttga actccttatg
     6301 tggcttggga tagttttgaa cttctgatcc ccatacctcc ccaccccagg gctgtgattg
     6361 caggtgtgtg cttgggattg aaccccagac tttgtgcatg ccaggccagc actctgtggc
     6421 aaccaagcta gatcccagcc acttctccat cttttaaaag aacaaaacat tgctaaatgt
     6481 gacaccgttg ctttgagttt taattctttt ttttttcctt tcataaaaca ttacaacctt
     6541 aagatattaa agactttcat tctggtccta cttctgcttt ttcactcaaa aaatggtctt
     6601 acaaatgatg ccttgtttac aaaagttctc taccacaggt tctagtagtg tgtaaagtgt
     6661 cagtttcttg cttgggtatc ttggagccta gcacactggc tttaaaggac acagccagga
     6721 agctgatatc ttgacagtgt ttgtagacct ttgttataaa aaaaaatgaa tgtcctggta
     6781 agggttagga gggagttcaa caacgaggaa acaagaatgt tgtgctgttt gagtttagag
     6841 ttgtttaaaa tgtcatctca agtcaagtca ctggtctgtt tgcatttgat aggtttttat
     6901 actaactagc attgtaaaat tatttcataa ttagaaaaca cctgtggata tttgtataaa
     6961 agtgtgaaat aaattttttt atgaaagtgc tcatcgcttg ttaacacagc actatgtatg
     7021 tgaaaccaca atctaagatt atacatgaca acccgagtta cctttctttg tatttcagca
     7081 gccaaagtaa agctttcaat gttt
//
