LOCUS       NM_001107699            5038 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus integrin subunit alpha 10 (Itga10), mRNA.
ACCESSION   NM_001107699 XM_001063132 XM_227469
VERSION     NM_001107699.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5038)
  AUTHORS   Sipila,K., Haag,S., Denessiouk,K., Kapyla,J., Peters,E.C.,
            Denesyuk,A., Hansen,U., Konttinen,Y., Johnson,M.S., Holmdahl,R. and
            Heino,J.
  TITLE     Citrullination of collagen II affects integrin-mediated cell
            adhesion in a receptor-specific manner
  JOURNAL   FASEB J 28 (8), 3758-3768 (2014)
   PUBMED   24823363
REFERENCE   2  (bases 1 to 5038)
  AUTHORS   Takada,Y., Ye,X. and Simon,S.
  TITLE     The integrins
  JOURNAL   Genome Biol 8 (5), 215 (2007)
   PUBMED   17543136
  REMARK    Review article
REFERENCE   3  (bases 1 to 5038)
  AUTHORS   Hynes,R.O.
  TITLE     Integrins: bidirectional, allosteric signaling machines
  JOURNAL   Cell 110 (6), 673-687 (2002)
   PUBMED   12297042
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jan 10, 2008 this sequence version replaced NM_001107699.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN06621351
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               JAXUCZ010000002.1  186871711-186871811
            102-213             JAXUCZ010000002.1  186873191-186873302
            214-323             JAXUCZ010000002.1  186873465-186873574
            324-415             JAXUCZ010000002.1  186873791-186873882
            416-530             JAXUCZ010000002.1  186874256-186874370
            531-658             JAXUCZ010000002.1  186875271-186875398
            659-807             JAXUCZ010000002.1  186875865-186876013
            808-958             JAXUCZ010000002.1  186876767-186876917
            959-1124            JAXUCZ010000002.1  186877547-186877712
            1125-1198           JAXUCZ010000002.1  186877819-186877892
            1199-1343           JAXUCZ010000002.1  186878114-186878258
            1344-1492           JAXUCZ010000002.1  186878460-186878608
            1493-1636           JAXUCZ010000002.1  186878800-186878943
            1637-1840           JAXUCZ010000002.1  186879084-186879287
            1841-1971           JAXUCZ010000002.1  186879674-186879804
            1972-2138           JAXUCZ010000002.1  186880609-186880775
            2139-2281           JAXUCZ010000002.1  186880872-186881014
            2282-2395           JAXUCZ010000002.1  186881386-186881499
            2396-2481           JAXUCZ010000002.1  186881778-186881863
            2482-2623           JAXUCZ010000002.1  186882128-186882269
            2624-2716           JAXUCZ010000002.1  186882429-186882521
            2717-2793           JAXUCZ010000002.1  186882677-186882753
            2794-2883           JAXUCZ010000002.1  186882907-186882996
            2884-2968           JAXUCZ010000002.1  186883382-186883466
            2969-3082           JAXUCZ010000002.1  186883599-186883712
            3083-3163           JAXUCZ010000002.1  186883888-186883968
            3164-3277           JAXUCZ010000002.1  186884102-186884215
            3278-3373           JAXUCZ010000002.1  186888168-186888263
            3374-3487           JAXUCZ010000002.1  186889078-186889191
            3488-5038           JAXUCZ010000002.1  186889462-186891012
FEATURES             Location/Qualifiers
     source          1..5038
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..5038
                     /gene="Itga10"
                     /note="integrin subunit alpha 10"
                     /db_xref="GeneID:310683"
                     /db_xref="RGD:1305152"
     exon            1..101
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     CDS             50..3553
                     /gene="Itga10"
                     /note="integrin, alpha 10"
                     /codon_start=1
                     /product="integrin alpha-10 precursor"
                     /protein_id="NP_001101169.2"
                     /db_xref="GeneID:310683"
                     /db_xref="RGD:1305152"
                     /translation="MELPSIPHLFLPLALLTGLCSPFNLDEHHPRLFTGPPEAEFGYS
                     VLQHVGGGQRWMLVGAPWDGPSGDRKGDVYRCSIGGFHSAPCTKGHLGDYQLGNSSQP
                     AVNMHLGMSLLETDADGGFMACAPLWSRACGSSVFSSGICAHVDASFRLQGSLAPTAQ
                     RCPTYMDVVIVLDGSNSIYPWSEVQTFLRRLVGRLFIDPEQIQVGLVQYGENPVHEWS
                     LGDFRTKEEVVRAARNLSRREGRETRTAQAIMVACTEGFSESRGGRPEAARLLVVVTD
                     GESHDGEELPAALKACEAGRVTRYGIAVLGHYLRRQRDPSSFLREIRAIASDPDERFF
                     FNVTDEAALTDIVDALGDRIFGLEGSRGENESSFGLEMSEIGFSIHRLQDGILFGMVG
                     AYDWGGSVLWLEEGRRLFPPRTALEDEFPPALQNHAAYLGYSVSSMLLPGGRRLFLSG
                     APRFRHRGKVIAFQLKKDGVVKVTQSLQGDQIGSYFGSELCPLDTDMDGITNILLVAA
                     PMFLGPQNKETGRIYVYVVGQQNLLMLQGTLQPDRSQDSRFGFAMAALPDLNHDGFSD
                     VAVGAPLEDGHQGALYLYHGTQTGIRPHPTQRIAAGSMPQALRYFGRSVDGRLDLDGD
                     DLVDVAVGAHGAAILFSSQPIIHLIPTLDVMPPHISVVQKDCKRRGQEAACLTASLCF
                     QVKSQTPGRWDRRFHIRFSASLDEWTAGARAAFDGSGQRLSPGQLRLSVGNVTCEQLH
                     FHALDTSDYLRPVALTVTFALDNTTKPGPVLAEGSSTSIRKLIPFSKDCGPDNECITD
                     LVLQADMDIRGSRKSPFVVQGGRQKVLVSVTLENKKENAYNTSLSLSFSRNLHLASLT
                     PQRAKSVKVECAVPSPHARLCIVGHPVFQAGAKVSFLLEFEFSCTFLLSQVSVRLTAS
                     SSSLERNETLQDNTAQTSAYIRYEPHLMFSSESTLHRYEVHPYRALPVGPGPEFKTTL
                     RVQNLGCHVVSGLVVSALLPAVAHGGNYFLSLSQVISGNASCTVQNLTDPPGFPVHPE
                     ELQHTSRLNGSNTRCQAVRCHLGLLPKGTEISVGLLRLVHNEFFRRAKFKSVTVVSTF
                     KLGTEKGSVLLLNEASQWRESHLEVIQTLPTLISLWILVGSVLGGLLLLALLVFCLWK
                     LGFFTRKKIPKEEQSEGKLEQ"
     exon            102..213
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            214..323
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            324..415
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            416..530
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            531..658
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            659..807
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            808..958
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            959..1124
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            1125..1198
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            1199..1343
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            1344..1492
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            1493..1636
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            1637..1840
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            1841..1971
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            1972..2138
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            2139..2281
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            2282..2395
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            2396..2481
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            2482..2623
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            2624..2716
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            2717..2793
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            2794..2883
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            2884..2968
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            2969..3082
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            3083..3163
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            3164..3277
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            3278..3373
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            3374..3487
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
     exon            3488..5038
                     /gene="Itga10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagagagaca gagcgactca gctttccgga caggacccga caagcagcca tggagcttcc
       61 ctccatccct cacctgttct tgccccttgc gttgctgaca ggtctctgct ccccctttaa
      121 tttggatgag catcacccac gcctattcac agggccacca gaggctgaat ttggatacag
      181 tgtcttacag catgttgggg gtggacagcg atggatgctg gtgggcgccc cctgggatgg
      241 gccttcaggt gaccgaaagg gggatgttta tcgttgctct atagggggat tccacagtgc
      301 tccatgtacc aaaggccacc tgggtgacta tcaactggga aattcctctc agcctgctgt
      361 gaatatgcac ctcgggatgt ctctcctgga gacagatgct gatgggggat tcatggcctg
      421 tgcccctctc tggtctcgtg cctgcggcag ctctgtcttc agttctggaa tatgtgccca
      481 tgtggatgct tcattccgac ttcaggggag cctggcaccg accgcccaac gttgtcctac
      541 atacatggat gtcgtcattg ttttggatgg ctccaatagt atctatccct ggtcagaagt
      601 tcagactttc cttcggaggc tggtaggaag actgtttatc gatccagagc agatacaggt
      661 aggactggta cagtacgggg agaaccctgt gcacgagtgg tccctgggag atttccggac
      721 aaaggaagaa gttgtgagag cagcgaggaa cctcagtcgg agggaggggc gagaaacgag
      781 aacggcccaa gcaataatgg tggcatgcac agaagggttc agtgagtccc ggggcggcag
      841 accagaggcc gctaggctgc tggtagttgt cactgatggg gagtctcacg acggagagga
      901 gcttccagca gcgctaaagg cctgtgaggc tggaagagta acacgttacg ggattgcggt
      961 ccttggtcac tatctccggc gacagagaga ccccagctct tttcttcggg aaatcagagc
     1021 cattgctagt gatccagatg agcgattctt cttcaatgtc acggatgagg ccgcgctgac
     1081 ggacatcgtg gatgcgctgg gagaccggat ttttggcctt gaaggatccc gtggagaaaa
     1141 tgaaagctcc tttgggctag aaatgtccga gattggcttc tccatccacc ggctacagga
     1201 tgggattctc tttgggatgg tgggggctta tgactggggg ggctccgtgc tatggcttga
     1261 agaaggtcgc cgccttttcc cgccacgaac tgccctggaa gatgagtttc cccctgcatt
     1321 gcagaaccac gcagcctacc tgggttactc tgtttcttcc atgcttctgc cgggaggacg
     1381 ccggctcttt ctctcagggg caccgaggtt tagacatcga ggaaaagtta tcgccttcca
     1441 gctaaagaaa gatggggttg tgaaggtcac ccagagcctc cagggggatc agatcggctc
     1501 atactttggc agtgagctct gcccgttgga cacagatatg gacggaataa ctaatatctt
     1561 acttgtggcg gctcccatgt tcctgggtcc ccagaacaag gagactggac gcatttatgt
     1621 gtacgtggtg ggccagcaaa atttgctgat gctccaggga acccttcagc cagaccgctc
     1681 ccaggattct cggtttggct ttgctatggc tgctcttcct gatctgaacc acgacggttt
     1741 cagtgatgta gcagtggggg cacctctgga ggatggccac cagggagcac tgtacctgta
     1801 tcacggaacc caaactggaa tcaggccaca tcctacccag aggattgctg ctggctccat
     1861 gccacaggcc ctccgatatt ttggccgaag tgtggatggc cgcctagatc tggatggaga
     1921 tgatcttgtg gatgttgctg tgggtgccca tggggcagcc attcttttca gctcccagcc
     1981 tatcatccac ctgattccaa ccctggatgt gatgcctccg catatcagcg tggttcagaa
     2041 ggactgtaag cgacgaggcc aggaagcagc ctgtttgacg gcatcccttt gcttccaagt
     2101 aaagtctcaa actcctgggc gttgggatcg cagattccac atacggttct cagcatcact
     2161 ggatgagtgg acagctgggg cacgtgcagc attcgatggc tctggccagc ggctgtcccc
     2221 agggcagctc cggctcagtg ttgggaatgt cacttgtgaa cagctgcact tccatgcact
     2281 ggatacatcg gattacctcc ggccagtggc cttgactgtg acttttgctt tggacaacac
     2341 cacgaagcca gggcctgtgc tggctgaggg atcctctacg tctatacgga agctgatccc
     2401 cttctcaaag gactgtggcc ctgacaatga gtgtatcaca gacctggtgc ttcaagctga
     2461 catggacatc agaggctcca ggaagtcccc atttgtggtt caaggtggcc gacagaaagt
     2521 gctggtgtcg gtgaccctgg agaacaagaa ggagaatgcc tacaacacta gtctgagtct
     2581 cagtttttct agaaacctcc acctggccag tcttactcct cagagggcca aatcagtgaa
     2641 ggtggagtgt gcagtccctt ccccccacgc ccggctctgc atcgtggggc atccggtctt
     2701 ccaggctggg gccaaggtgt ccttcttgtt agagtttgaa tttagctgca ccttcctcct
     2761 gagccaggtc tctgtgaggc tgactgccag tagcagtagc ctggagagga acgagaccct
     2821 tcaagataat acagctcaga cctctgccta catccgatac gaacctcacc tcatgttctc
     2881 tagtgagtcc actctgcatc ggtatgaggt tcatccttac agggctctcc cagtgggccc
     2941 cggccctgaa ttcaaaacca ctcttagggt tcagaacctt ggttgccatg tggtcagtgg
     3001 tctcgttgtc tcagccctcc ttccagctgt agcccatggg ggtaactact tcctgtcact
     3061 atctcaagtc atctctggca atgcaagctg cacagtgcag aacctgactg atcccccagg
     3121 attccctgtg catccagagg agcttcagca cacaagcaga ctgaatggca gtaacactcg
     3181 gtgtcaggcg gtgaggtgcc atcttggact gctgcctaag gggactgaga tctctgttgg
     3241 actgctgagg ctggttcaca atgaattctt ccggagggcc aagtttaagt ctgtgacagt
     3301 ggtcagcacc ttcaagttag gaactgagaa gggcagtgtc ctcctactga acgaagcctc
     3361 ccagtggcgt gagagccact tggaggtgat tcagaccctc cctaccctca tctccctgtg
     3421 gatcctggtt ggcagcgtcc tgggagggct gctcctgctt gctctccttg tcttctgcct
     3481 gtggaagctt ggcttcttta cccgcaagaa aatccccaaa gaagaacaaa gtgaagggaa
     3541 gttggagcag tgactgcgga aggctcagaa gcccactttg gcagcctttt caagagactt
     3601 gtatccaaat gatgcttgga ggctcaaagg ggaaaagatg ctgctggaga gtgtctcctg
     3661 acctgcagcc tcacttgact tttgagccat ggggatgctt ctggcaagag atgaagcttt
     3721 gccttagaga agggctggca ccaaaacact agcatcccca ccctatgcgt ccctcctcct
     3781 gaccggttcc acagccagca ttgggtcttt gttttgggct ctatcttccc cgttaccagg
     3841 agtcaaaaga ttttgttccc gacccctttc agattccctt tgtcctccct catagttccc
     3901 cggaggattg ggggtggtgg tgaaaaaatg taccctctac cgctgcccac acacactctc
     3961 tcaccttcct gcctgctccc cgctccacag gagagggctg acgttggctt aaaagaagta
     4021 aaagtcaaca tctgctactt tcccgtggag tcctgtgatt catggagtcg aatggggaga
     4081 gtcaacagga aaaaaggagg gaggagaaaa agccacaaga gacactctgt acaattccaa
     4141 ggcacagaga agccttcaga caggcaactg ccagccagct gaaacttgag acttcacagt
     4201 actcccgccc tcaggtgctg gggaaaccca gctgccccac cccccacccc ccgccccgcc
     4261 tcgggctctg ggctcgggcg ttccaaccct cagccttctc tgggagcaaa gccaggactt
     4321 gatgctgaat tttccggagc caggggcccc caggtggttc aagctggaat agcagggaaa
     4381 cccattggca gttttatcca tttactcttt ggggctttct taacagaaag cttctcagtg
     4441 gttgggaagc cctttcatcc caccaggttt ggataacaac agtcccaaga gatccaaaca
     4501 aagaggaatc tgcatctgga agcctacgtg gttggcatca ggtctctgga gagtaagccc
     4561 ttacttgccc agcattgatt ctataatggg gatatcctgg gaaaatccct gatactcctg
     4621 ttgtatgcat aggtttctct gctggagtga gtttttcagc ccttgcttga tttccatgtt
     4681 ggaaatcgca tgttaactct aaactctctc ccttttgtcc tatgttttgg ttcatgggca
     4741 attgaaattc tcatagtaat gggggaactt gtatttttat tgtaattaag actttgaaga
     4801 gcagagacag ttactggtct ccatagttca gctctgacag atgccctctc agactgcgaa
     4861 gagaggaaat ctgattggac agttgaccag ttgccagaga accggtcttc ccaggctgtt
     4921 ctctgagtct gcttgcagtg tttattttgg tgtctctggt cttcggcaga ggctccctcc
     4981 tgggggttgt cacggtgagc agatgatcag aacaaataaa atccagttat caaatggc
//
