LOCUS       NM_001409142            2281 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus isochorismatase domain containing 2A (Isoc2a),
            transcript variant 1, mRNA.
ACCESSION   NM_001409142 XM_003748760
VERSION     NM_001409142.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2281)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jul 12, 2022 this sequence version replaced XM_003748760.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.1366.1,
                                           SRR26643285.859.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               JAXUCZ010000001.1  77985878-77986002   c
            126-266             JAXUCZ010000001.1  77972494-77972634   c
            267-476             JAXUCZ010000001.1  77972175-77972384   c
            477-547             JAXUCZ010000001.1  77971933-77972003   c
            548-665             JAXUCZ010000001.1  77971739-77971856   c
            666-2281            JAXUCZ010000001.1  77967751-77969366   c
FEATURES             Location/Qualifiers
     source          1..2281
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..2281
                     /gene="Isoc2a"
                     /note="isochorismatase domain containing 2A"
                     /db_xref="GeneID:684270"
                     /db_xref="RGD:1592677"
     exon            1..125
                     /gene="Isoc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            126..266
                     /gene="Isoc2a"
                     /inference="alignment:Splign:2.1.0"
     CDS             129..758
                     /gene="Isoc2a"
                     /note="isoform 1 is encoded by transcript variant 1;
                     isochorismatase domain-containing protein 2A"
                     /codon_start=1
                     /product="uncharacterized protein LOC684270 isoform 1"
                     /protein_id="NP_001396071.1"
                     /db_xref="GeneID:684270"
                     /db_xref="RGD:1592677"
                     /translation="MAAARASLGRIRPESSILFLCDMQEKFRPSIAYFPQIVSVAARM
                     LKVARLLDVPILLTEQYPQGLGPTVPELGAQGIKPVSKTCFSMVPSLQKELDRRSQLQ
                     SVLLCGIETQACILNTVLDLLDRGLQVHVVVDACSSRSQIDRLVALGRMRQSGAFLST
                     SESLILQLVRDAAHPQFKEIQKIIKEPAPDSGLLGLFQGQNPLLLNSRP"
     exon            267..476
                     /gene="Isoc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            477..547
                     /gene="Isoc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            548..665
                     /gene="Isoc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            666..2281
                     /gene="Isoc2a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagacctcg tgaccaaagc gggcaaaacg gtgacccagc ccggaaccag tgacagtcca
       61 gtgggcaaag tgccctgaag ggacctagtg gaggggctga ctggactcga acctggtatt
      121 gctggacaat ggcagcagcc agggctagcc tgggccggat ccgcccagag tcctccatcc
      181 tgttcctatg tgacatgcag gagaagtttc gtcccagcat agcctacttc ccacagattg
      241 tgtcagtggc tgctcgaatg cttaaggtgg cccggctgct agatgtcccc atcttgctga
      301 cagagcagta cccacaaggc ctgggcccca cagttcctga gctgggcgct cagggcatta
      361 agccagtgag caagacttgc ttcagcatgg tgcccagctt acagaaggag ctggacaggc
      421 gctcccagct gcagtctgtg ctgctctgtg gcatcgagac ccaagcctgc atcttgaaca
      481 cggttctgga cctccttgac cggggactgc aggtccatgt ggtggtggac gcctgctctt
      541 ctcgaagcca gattgaccgg ctggtggcac tgggccgtat gagacagagt ggagctttcc
      601 tgtccaccag cgaatcactc attctgcagc ttgtgaggga tgctgcccac ccccagttca
      661 aggagattca gaagatcatt aaggagccag ccccagacag cgggctgctg ggtctattcc
      721 aaggtcagaa ccccctcttg ctgaactcca ggccctgact gagatgagag tgttactctg
      781 tcattggtgg aagcggctgc cctgtgggag gggaggggtg taatgcctcc tggtgcaaga
      841 gctggtcctg gaaaagcaaa agagactcct gggtgctgga aggggttggg gacaggaggt
      901 tgactgaaga ggggtggagg gggaactctg cttaggtcta cctcacgagc agagggcaaa
      961 gaagtgtcac agactaggac tcatactctg aataaacatt gatgtggctg tggactgaaa
     1021 cattgttggg gtttgcgggg tgctactaga gcgtgcaggt agagaaggag atgggtcttt
     1081 ggaggttgag gggaggggaa tatctcttcc cagccccaag ccggggctaa cggaggccat
     1141 gtctgcatgg taggcagtgt gtgtatcttg aagagtttct ggctgacccc acgtcttagg
     1201 gtttcagctg ctaagacaaa gcaccatgac ccaaaagcag gctggggagg aaagggacac
     1261 taccagatca gtgtccgtca ttggggaaag tcaggacagg aactcaagca gagctggaac
     1321 ctgaaggcag aagctgatgc agaggccatg gaggggcgct gtttactgcc ttgcttccca
     1381 tggcctgctc agcctacttt cttgtagaac ccaggaccgc ctggcaccac ccacaatggg
     1441 ctatgacctt ccacactgac cactagttga gaaaatgcct tacagctgga tctcatggag
     1501 gcatttcctc aactgagact gttttctctc tgaggactct agcttgtgtc aagttgacac
     1561 acaaagccag ccatacagcc catcccaaat agtacttgtg cccaaccctg ctggcccctc
     1621 tgacacaaca actcgtacat cctgcaggcc tcacatccaa gctctgctac cccgagaggg
     1681 agctgggcgc cgtgttacca cggttgcaga ggccacttag aacccacatg actaaaccag
     1741 gaaaaacatt tccctaaaca gcctttctct ggagagcacc cactcggctt tatagcatcc
     1801 tgtaggcttg cactgaggtg ccagagaaga gcctggaaga ccaggcagtg tgtgtcaagg
     1861 acaggtttcc ttcatggagc ccttgcctgg gcagtccatg aagctgtgga ggggaagcct
     1921 aagttgcagt ggagacatca gggtgttgga gatggccctc ggagagacag atgcactgtt
     1981 cttttcagga gaaagtcttc caaatgagtt taccttttta tacccatcac cactcttggc
     2041 aggtaaagta aggtttcctg gaccacaagc acgctggtac tggggcagtt ctggtaacga
     2101 aggagacagt gcctaagtga ttaccgaggc ggggcggggc ggggcggggc ggggagggcg
     2161 gagcacacag agcatggata cacaagacac aggttttctt ttccaaccga gcagtggatg
     2221 catactattt cgtactgttc agaacgatat ggaaattaaa atgaatgctc tatttctgga
     2281 a
//
