LOCUS       NM_001014242            3312 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus isochorismatase domain containing 1 (Isoc1),
            mRNA.
ACCESSION   NM_001014242 XM_347279
VERSION     NM_001014242.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3312)
  AUTHORS   Horiba,N., Masuda,S., Takeuchi,A., Saito,H., Okuda,M. and Inui,K.
  TITLE     Gene expression variance based on random sequencing in rat remnant
            kidney
  JOURNAL   Kidney Int 66 (1), 29-45 (2004)
   PUBMED   15200410
REFERENCE   2  (bases 1 to 3312)
  AUTHORS   Kikuchi,M., Hatano,N., Yokota,S., Shimozawa,N., Imanaka,T. and
            Taniguchi,H.
  TITLE     Proteomic analysis of rat liver peroxisome: presence of
            peroxisome-specific isozyme of Lon protease
  JOURNAL   J Biol Chem 279 (1), 421-428 (2004)
   PUBMED   14561759
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001014242.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB108669.1, SRR26643299.62864.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-312               JAXUCZ010000018.1  54356757-54357068
            313-432             JAXUCZ010000018.1  54367600-54367719
            433-636             JAXUCZ010000018.1  54367840-54368043
            637-753             JAXUCZ010000018.1  54370482-54370598
            754-3312            JAXUCZ010000018.1  54374612-54377170
FEATURES             Location/Qualifiers
     source          1..3312
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q12.1"
     gene            1..3312
                     /gene="Isoc1"
                     /gene_synonym="DR-NR#1; RGD1307632"
                     /note="isochorismatase domain containing 1"
                     /db_xref="GeneID:364879"
                     /db_xref="RGD:1307632"
     exon            1..312
                     /gene="Isoc1"
                     /gene_synonym="DR-NR#1; RGD1307632"
                     /inference="alignment:Splign:2.1.0"
     CDS             7..900
                     /gene="Isoc1"
                     /gene_synonym="DR-NR#1; RGD1307632"
                     /note="Down-regulated in nephrectomized rat kidney #1;
                     DR-NR1; down-regulated in nephrectomized rat kidney
                     protein 1"
                     /codon_start=1
                     /product="isochorismatase domain-containing protein 1"
                     /protein_id="NP_001014264.2"
                     /db_xref="GeneID:364879"
                     /db_xref="RGD:1307632"
                     /translation="MAAAEPSVAALAGGGVGAGAPSGGVPVLFCFSVFARPASVPHGA
                     GYDVLIQKFLSLYGDQLDMHRKFVVQLFAEEWGQYVDLPKGFAVSERCKLRLVPLQIQ
                     LTTLGNLTPPSTVFFCCDMQERFRPAIKYFGDIISVGQRLLQGARILGIPVIITEQYP
                     KGLGSTVQEIDLTGVKLVLPKTKFSMVLPEVEAALAEIPGVRSVVLFGVETHVCIQQT
                     ALELVGRGIEVHIVADATSSRSMMDRMFALERLARTGIIVTTSEAVLLQLVADKDHPK
                     FKEIQNLIKASAPESGLLSKV"
     exon            313..432
                     /gene="Isoc1"
                     /gene_synonym="DR-NR#1; RGD1307632"
                     /inference="alignment:Splign:2.1.0"
     exon            433..636
                     /gene="Isoc1"
                     /gene_synonym="DR-NR#1; RGD1307632"
                     /inference="alignment:Splign:2.1.0"
     exon            637..753
                     /gene="Isoc1"
                     /gene_synonym="DR-NR#1; RGD1307632"
                     /inference="alignment:Splign:2.1.0"
     exon            754..3312
                     /gene="Isoc1"
                     /gene_synonym="DR-NR#1; RGD1307632"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggaacatgg cggcggcgga gccctcggtg gccgcgctgg ctggcggcgg tgtgggcgcc
       61 ggggcgccgt cgggcggcgt gccggtgctc ttctgcttct ctgtgttcgc gcggcccgcg
      121 tcggtgcccc acggcgcggg ctacgacgtg ctcatccaga agttcctgag cctgtacggc
      181 gaccagctcg acatgcaccg caaattcgtg gtgcagctct tcgccgagga gtggggccag
      241 tacgtggacc tgcccaaggg cttcgcggtg agcgagcgct gcaagctgcg cctggtgccg
      301 ctgcagatcc agctcacgac cctggggaat ctcacgcctc ccagcactgt gttcttctgt
      361 tgtgacatgc aggaaaggtt ccgcccagcc atcaagtatt ttggagacat cattagtgtg
      421 ggacagagac tgttgcaagg agctcggata ctagggatcc cagttatcat aacagaacag
      481 tacccgaaag gactcggcag caccgttcag gaaattgact taacaggtgt aaaactggtt
      541 cttccgaaga ccaagttttc tatggtgtta cccgaagtcg aagctgcctt ggctgagatt
      601 cctggcgtcc ggagcgttgt gctgtttgga gtagaaacac acgtctgtat ccagcagact
      661 gccctggagc tggtgggccg aggtattgag gtccacatcg ttgctgacgc cacatcctcg
      721 agaagcatga tggacaggat gttcgctctt gagcgtcttg ctcgaactgg gatcatcgtg
      781 accactagtg aggctgtcct cctacagctg gtggcagaca aagaccaccc gaagttcaag
      841 gaaatccaga acctaattaa ggccagtgcc ccggagtctg gtctgctttc caaagtgtag
      901 gagtctcgga ggatgaggat cctccttccc cccaggcgac gggactgcaa gccagacaag
      961 ccgttgtctc ttagaactaa tatgttaagt caacaacagt tccttctttg cagttcttag
     1021 taacactgaa ctggctagac cattgggtaa acgtgtttag ttacaatgtc gaggcttcag
     1081 gtgctgctta gttatctccc ttgtttccta acgagctttt agtcattaag acaaattacc
     1141 atggaggtgc ctgtcttgtc tacactgtat actctgacca tatctttccg aagtgcaccc
     1201 tctggtgaag ttttcttcaa ctgtgcactt taaaggggaa aaaaacaaaa aacccaccta
     1261 ccacagtgat ttgacttttc tattgttgtg aaacatccgt tgtaatgtca gtgtgtaccc
     1321 agtggtttcg cttcccaggc tgactggcca atgatcctgg attgacaagc aggactctgg
     1381 atccagtatc tgctcctctc acagtgttga ggttactgac tgagtgacat gcactgactt
     1441 aaccacagca aattatctta aatattgtgt atctgtcttt attgccctaa tttccttatt
     1501 cccgttagca tctttgtgga ttttcttcct ctggctaaca gtctatgtta acgttttttt
     1561 cttccactga atgttctact tcctccttgg ttatgtcaga cttgtaaaca ggtgggagtg
     1621 gtttgcagtg ctgggtaatg gacagaggca caccgtaaca taatgccttt acagtctttt
     1681 taagtgcatc ttttactgta caccggagtt ggtagagaaa gaaactctag gtaaaatgga
     1741 gtttaaaatg cccatattcc ccttcaaaca ttgttatggc tgacatcatc aacaggactc
     1801 ttagcggtaa tactgtggtc attgttaatc cgtcaagaaa cttactttca tttcatactg
     1861 attagtgctt aaaaaacatt ttaatgtatg ttgtgatcag tggaacatca ctctctttgt
     1921 ataaaattaa agaaaatgta ttatgtaagt gaaattgttt tgtttcccat gactccatga
     1981 atattagtca gtgaattgta ataagttttc aaaggcaaca gatttgatat ttataatctt
     2041 ataacttatc agaacttaca aaggagcaga atccggtgca ggcccagacc gataagagtt
     2101 cccgcagagt tttcctgtta gcactatcga aatgtgtttt gttgtttgag ccttggtaag
     2161 gcaccacagc atagacttct tgatgtgctc agtggttctc aacctctggg cagtgtccac
     2221 aggggttgca gatcagatat ctttcctatc aggtatttac gttaagattc atgacagtag
     2281 caaagttacg gttatgaagt agcgatgaaa ataattgtat ggttgggttg ggtcaccacc
     2341 acatgaataa ctgtattaaa gggttgcagc attaggaagg ttgagagctc ctgcttagaa
     2401 gatgagtcta gaaagaagca tcatatagat atccacgttt taagaaaatt tctaataagt
     2461 gtaatctagt gtttttcaaa cgtttattat ctgtagtgct tgttaaaata ctagccccgc
     2521 ccctcttcag cattgcccct ggcaaaggaa ggatttatgg taggaaggtt tccctctctt
     2581 gtacccatgc ctcttccaca gctgaagcca gctctgggac gctggattag tgtcctgtag
     2641 ctgcactaac aaaacgccat agacgccatg tctcaagaca acagactgtt tcatctcaat
     2701 tctgtagagt tctagggctt actgtgctga cagcaaagct cgtgttgcta aggctgcgat
     2761 gtattctggg gcccgtataa gggatgactt ctgccgtccc atgatgctag agtctgctcg
     2821 tgtgggtttt tatgtttggt ttgttttggt ttatttgatt gttttgtccc ttatttccat
     2881 cttctcaggc aacaagtgtg ggtccttagg tcccttctga ctcccttctt ctgcctggcc
     2941 taagctctca tgggatttaa ggttcctaat tagcatcctt attccacctg cagccttaac
     3001 acctttaggc catgtatctc tttcccagga tctagggatt aggatgtggg tgtcttcaca
     3061 cagtcatcag ctagtaagtg aattgaatta aattgtatca ggtccaggaa tgtacataca
     3121 tggaagctca gaacaattgt gagctctgcc ttctcttttc tgttttgtta atcatgccaa
     3181 gaaggtgaca aggcttttac tttatgatta taggaaaact ggttgattgt aatactttga
     3241 agtggaagtg tctgtgactt tataggataa tgaaattctt ttcattgaca taaataaaga
     3301 acttcagaat gt
//
