LOCUS       XM_008764895            2613 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus isthmin 2 (Ism2), transcript variant
            X2, mRNA.
ACCESSION   XM_008764895
VERSION     XM_008764895.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008764895.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008764895.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2613
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2613
                     /gene="Ism2"
                     /note="isthmin 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 ESTs, 1 long SRA read,
                     6 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 16 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:681936"
                     /db_xref="RGD:1589343"
     CDS             135..1610
                     /gene="Ism2"
                     /codon_start=1
                     /product="isthmin-2 isoform X1"
                     /protein_id="XP_008763117.1"
                     /db_xref="GeneID:681936"
                     /db_xref="RGD:1589343"
                     /translation="MRPPPGRARLPRALMLLAALLAAGRGLPLRKRGPGPHGHSRMVE
                     ASPAPDLSSPKDKETTSGFPGDDLQEPCQPKCQTVPEPTALTLGTATPPGNLEHTPLL
                     LELQKLPGLANTDLSAPNPNIQVTIEVVQDPQTEVDVDLPSEPSNLWPLRASSWLPTR
                     ELFWPLFWGYQEGEEGATSLKDRAPGEAEEEEGKDYALEYDEGEDQGGTEEDEDEEPW
                     SSGAIDNWDYGWLGPQDRDFQEPDSYDYEPQEEWGTWSPCSGSCSSGHQQRTRPCGYA
                     CTATESRVCDLPPCPGTAEENTLGFAREGWQPLAHNATDMLDSDVDSCEKWLNCKSDF
                     LTKYLSQVFKDLPSCPCAYPLEAVYSAVSLRDEHQGRTFQWRDASGPRERLDIYQPTA
                     RFCLRSMLSGESSTLAAQHCCYDEGSRLLTRGKGAGAPDLVSTDFSPELHFKVDTLPW
                     ILCKGDWSRYHTVRPPNNGRACADNPPEAEYLAQLQEAKEY"
ORIGIN      
        1 tcctcgcgag gtccccgcgc ggctagaccg agcctgcgcc gcagcccgcg ctcccgcccc
       61 tggaacaggc gaggcggggc gcgaacgcgc tcccgagccc ggcggctcca ccagagcagc
      121 ctcgcacaga cacgatgcgg ccaccgcccg gccgagcgcg gctcccgcga gccttgatgc
      181 tgctggccgc gctgctggcc gccggccgag ggcttccact gaggaagcga ggtcccgggc
      241 cccacggcca ctcgaggatg gtggaggcct cacccgctcc ggatctcagc tcccccaagg
      301 ataaggagac aacatcagga ttccctggag acgatctgca ggaaccatgt caacccaagt
      361 gccagactgt tcctgagccg acagctctga ctctgggcac ggccactcct cccgggaacc
      421 tggaacacac acctttgctg ctggagctgc agaagctgcc agggttggct aacacagact
      481 tgagcgcacc aaaccccaat atccaggtga ccatcgaggt ggtgcaggac cctcagactg
      541 aggtagacgt ggacctgcct tctgagccca gcaatctctg gcccctgcgt gcctctagct
      601 ggttgcccac cagggaactc ttttggcccc tcttctgggg ctaccaagaa ggtgaagaag
      661 gagccaccag cctcaaagac agggctccag gggaagcgga ggaggaagaa ggaaaggact
      721 atgctttgga gtatgacgag ggtgaggacc aagggggcac tgaagaagat gaggatgagg
      781 agccttggtc cagtggggcc atagacaact gggactatgg ctggttgggt cctcaggacc
      841 gggacttcca ggaaccagac agctatgact atgaacccca ggaggagtgg ggcacctggt
      901 ctccctgcag tgggagctgc agcagcggcc accagcagag gacgcggccc tgcggctatg
      961 cctgtactgc cacagagtcc cgagtctgcg accttccccc ctgtcctggc accgcagagg
     1021 agaacacgtt gggctttgcc cgtgagggct ggcagcccct tgcccacaat gctacggata
     1081 tgcttgattc agatgtggac agctgtgaga agtggttgaa ctgcaagagt gacttcctaa
     1141 ctaagtatct gagccaagtg ttcaaggacc tgcccagctg cccttgcgca taccctctgg
     1201 aggcggtgta cagtgctgtg agcctgcggg acgaacatca gggccgcacc ttccaatggc
     1261 gagatgcgag tggcccacgg gaacgcctgg acatctacca gcctaccgcg cgcttctgcc
     1321 tgcgctccat gctgtctggc gaaagcagca cattggccgc ccagcactgc tgctatgatg
     1381 aaggcagccg gttgctgacc cgtggcaaag gggcaggagc tccggaccta gtcagcaccg
     1441 acttttcacc cgagctacac ttcaaggtag atacgctgcc ctggatcctg tgtaaggggg
     1501 actggagccg ctaccacact gtgcgccccc ccaataatgg ccgggcctgc gcagacaatc
     1561 cgcctgaggc agagtacctg gctcaactgc aagaggccaa agagtactga agagggattg
     1621 gagactggtc cttctgccct ctgccccgcc cctcccatac tgggcaagtg taagggctta
     1681 tttgagaggc caatcaggct tgcatactcc ctgctcccat agaccccagg catctcaagg
     1741 actggtgaga aggctggagg gtgtgttggg aataaggccc ttgtgatgtg ttgggaaagt
     1801 gtctgaaggg gaggagctat gccagtctga caagatccct ttcccccttt ctctcagaac
     1861 cgggcccttc tgcctttctc tgttcaggat tgagacaggg tggcccacag acatgccagt
     1921 tcccaggatc tgatgtgaat ccctttgacc ccctacccta aggccacttg tggaagaaca
     1981 caggaaggac aagaaaggac agtcctttca tctgacccta tagctgcttt ttgctgggct
     2041 agcagagtac gggtgaccac ccctccttgt ggcacacagc ttctcctacc ctatcccatg
     2101 ctgtgaagcc atcagtgggc tgaagaagtc agcggggctc aggggagatt ggttcctgtc
     2161 agggaaccat cagctgtttc tggtcctttg ttccgtcccc agatgataga catgcgctgt
     2221 ctaccacagc cgtggcagcc tggtttgggg tgggctcagg agggtatcat gtgcctgtat
     2281 ggagtgttcc gatgtccgat gcgggccatt ttgtggtgtt ggtacccaca ccaatggccc
     2341 atttaatgcc cccatgtggc gccactgaaa gcactggact tggagttggg agatggatgc
     2401 cgtggctccc agcacagctg tgccttttcc cggacacctc tcaaccctcc aaaccacact
     2461 tccttggctt ctccagagct gaaatattgt agactttctg tctccattca caaaccctcc
     2521 agaggggctt ggtagggaac ttgagttcca gccccatcca cagctgtcca gaagctgccc
     2581 tgggatcctc ggcaataaag cactttattt tca
//
