LOCUS       NM_001102413            2490 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus iroquois homeobox 6 (Irx6), mRNA.
ACCESSION   NM_001102413 XM_001064772 XM_226359
VERSION     NM_001102413.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2490)
  AUTHORS   Star,E.N., Zhu,M., Shi,Z., Liu,H., Pashmforoush,M., Sauve,Y.,
            Bruneau,B.G. and Chow,R.L.
  TITLE     Regulation of retinal interneuron subtype identity by the Iroquois
            homeobox gene Irx6
  JOURNAL   Development 139 (24), 4644-4655 (2012)
   PUBMED   23172916
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from CH474037.2.
            
            [WARNING] On Oct 26, 2024 this sequence was replaced by
            NM_001102413.2.
            
            On or before Aug 24, 2007 this sequence version replaced
            XM_226359.4, XM_001064772.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN14984038
                              [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2490
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19p11"
     gene            1..2490
                     /gene="Irx6"
                     /gene_synonym="RGD1564830"
                     /note="iroquois homeobox 6"
                     /db_xref="GeneID:307715"
                     /db_xref="RGD:1564830"
     exon            1..785
                     /gene="Irx6"
                     /gene_synonym="RGD1564830"
                     /inference="alignment:Splign:2.1.0"
     CDS             741..2072
                     /gene="Irx6"
                     /gene_synonym="RGD1564830"
                     /note="Iroquois related homeobox 6"
                     /codon_start=1
                     /product="iroquois-class homeodomain protein IRX-6"
                     /protein_id="NP_001095883.1"
                     /db_xref="GeneID:307715"
                     /db_xref="RGD:1564830"
                     /translation="MAFPPFGHPYGGASQFLVSASSSATCCETAPRSVSDVASASTSA
                     STLCCAPYDSRLLGSARPELGAALGIYGAPYAAAQSYPGYLTYGPEPPTLCGALNPQY
                     EFKDAAGSFTPSLTQPGAYYPYETTLGQYQYDRYGGVELSSAGRRKNATRESTSALKA
                     WLHEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWVPKNKGGEE
                     RKADGGGEDALGCLNGDTKDATASQEAQGLQLSDLEDLEEEEEEEEEEEAEKEEAAVS
                     AARRLVGFPKSAQPLPAPCAAAQEGCLESTECGLAVPRFSFTEAPQSGEADFITAEPS
                     GPTMIVHYPSGHKPRIWSLAHTAASSAVKGAPSTPPRGQSPECHMIPRQPSSVRRLLV
                     PRFSGGEENSPAVKAFGNSTFALQGLPLNCAPCPRRREPEVRFQYPSGAEG"
     exon            786..1034
                     /gene="Irx6"
                     /gene_synonym="RGD1564830"
                     /inference="alignment:Splign:2.1.0"
     exon            1035..1144
                     /gene="Irx6"
                     /gene_synonym="RGD1564830"
                     /inference="alignment:Splign:2.1.0"
     exon            1145..1452
                     /gene="Irx6"
                     /gene_synonym="RGD1564830"
                     /inference="alignment:Splign:2.1.0"
     exon            1453..2067
                     /gene="Irx6"
                     /gene_synonym="RGD1564830"
                     /inference="alignment:Splign:2.1.0"
     exon            2068..2490
                     /gene="Irx6"
                     /gene_synonym="RGD1564830"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtattctct cctccctcgc cgccccactt gcctcttgcc tcctccgggc cgcaggggag
       61 gaggcgagca cgctgcaccc tgggcccgca cagctcgcag ggaggcgtat ttcccacttc
      121 tcctggggaa tttggagagg gtctgtgcgt gcgcgcgcgc gtgagccgca ggcgaaagcg
      181 ggtaggatct agcggcgagc agagggtcag ggtctttgac gtttctcgcc ggttgcacaa
      241 acctcgcgga gcaagaaaga gtgtatccga gagtgcgtgc gtgtacacgg gctggctgcc
      301 cttggcacat tcggtggccc ggggccccgg ggcccgcggt cccctctggc ggcccgggat
      361 taccgtgacg tcacattgag cctctggcca ccttggactg ggacacctcc gcaacctcac
      421 agcccgacgc cgctgcgctg tacctcacct tgccaccgcg cgcctttggt accctgtacc
      481 ttcttcttaa ttctgccgat ccatgggccc ctctgtcttc tggaacgcac aggccgtagg
      541 ggtgccttcc caaccgcagg actcggcagc ccctctgcct ttgactctgc ctccagactc
      601 tccccgcggg ctaaggaact ggcggtcagc tcctgcagcc ctgtaaggaa accagacacc
      661 gcgcgctggt gtcatagaat caccgacctg agcaagggac tcgaaagaaa ggggaatcaa
      721 atccccgaag accccctgct atggccttcc cgccctttgg acacccgtat ggcggcgcat
      781 cccagtttct ggtgtctgca agttccagtg ccacttgctg tgaaacggcc cctcggtcag
      841 tgtcagatgt ggcctcagcc tccacctctg cctctactct ttgctgtgca ccctatgaca
      901 gtcggctgct gggcagtgct cggccagagc tgggcgctgc cttgggcatc tatggagcac
      961 cttatgcagc tgcccagagt tacccagggt acctgaccta tggcccagag ccacctacac
     1021 tgtgtggtgc actgaatcct cagtatgagt ttaaggatgc tgcaggaagc tttactccca
     1081 gtctgaccca gccaggggcc tactacccct atgagacaac tctggggcag tatcaatatg
     1141 acaggtatgg tggagtggag ttgagcagcg ctggccgcag gaagaatgcc acaagagaga
     1201 gcaccagcgc actgaaggcc tggctccacg aacaccgcaa gaacccgtac cccactaagg
     1261 gcgagaagat catgctggcc atcatcacca agatgaccct cacccaggtg tccacctggt
     1321 tcgccaacgc gcgccggcgc ctcaagaagg aaaacaaaat gacgtgggtg cccaagaaca
     1381 agggtgggga ggagaggaaa gcagatggtg gaggagaaga cgctctgggg tgcctgaatg
     1441 gtgacaccaa agacgctact gccagccaag aggcccaggg gctgcagctg agtgacttgg
     1501 aagatctgga ggaagaggag gaagaggagg aagaggaaga agcagaaaaa gaggaggcag
     1561 cggtctcagc agcacggagg ctggttggtt ttccgaagag cgcacagccc ttgcctgctc
     1621 cctgtgctgc cgctcaggag ggctgcttgg agagcacaga gtgcggcttg gctgtgcccc
     1681 gcttctcctt tactgaagcc ccacaatcag gggaagctga ctttattaca gcagagccaa
     1741 gtggccccac gatgatcgtg cactacccaa gcggccacaa accccgcatt tggtccttag
     1801 ctcacactgc agcatccagc gctgtcaaag gtgctccctc aactccgccc aggggacaaa
     1861 gtccagagtg ccacatgatt cccagacagc ccagttctgt caggcgactc ctggtcccca
     1921 gattctcggg aggcgaagaa aattctcctg cagtcaaagc tttcggaaac tccacgttcg
     1981 ctctgcaggg gctgccactg aactgtgcac catgcccgag gcggagagag cctgaagtgc
     2041 gcttccagta cccatctgga gcagaaggtt agctcaatga ccgcggtttg cagaagactt
     2101 ttggaaatgg ctgcttctgg attcaccttc atattaagaa aactccaggc cttggcaggg
     2161 tctgggagct ctctcacttt gcctaagaca cacacacaga accatccttg cacgccgggc
     2221 tggggctagc cagacagaca tgtacctaat cagacttgga ggggagatgg ccttggggaa
     2281 agccctgtgt gtgctcacag ggtactctta ccaagtctct cttcctcctg tggatggagg
     2341 tcccgaagag catctcctcc tgttcaccca cccctgccca gtccactcac tgtgtaactt
     2401 tcttgttgaa atggtctcca aggactgtct gtgtcttctt cctctccgtt tttcctgacc
     2461 caggttatac cttcaaaaaa tgactaagct
//
