LOCUS       XM_006251974            2874 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus interferon regulatory factor 9 (Irf9),
            transcript variant X2, mRNA.
ACCESSION   XM_006251974
VERSION     XM_006251974.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006251974.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006251974.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2874
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2874
                     /gene="Irf9"
                     /gene_synonym="Isgf3g"
                     /note="interferon regulatory factor 9; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 27 ESTs, 1 long SRA read, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 170 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:305896"
                     /db_xref="RGD:1308766"
     CDS             456..1652
                     /gene="Irf9"
                     /gene_synonym="Isgf3g"
                     /codon_start=1
                     /product="interferon regulatory factor 9 isoform X2"
                     /protein_id="XP_006252036.1"
                     /db_xref="GeneID:305896"
                     /db_xref="RGD:1308766"
                     /translation="MATGKARCTRKLRNWIVEQVESGQFPGVCWDDAAKTMFRIPWKH
                     AGKQDFREDQDAAIFKAWALFKEKHKDGDIGNPAVWKTRLRCALNKSSEFEEVPERGR
                     MDVAEPYKVYRILPAGTLPTQPRNQKSPFKRSISSVSPERGECKENGIVSHSDSGSNV
                     CGGGSNGGGSSDSCGSTSSSELEEGAGTTEATVQEDPVFMENPLPPNSDYSLLLTFIY
                     GGRVVHEIQVHSLDCRLVAEPSDPESSMVQQVVFPRPDPLEPTQSLLNQLERGILVAS
                     NSRGLFVQRLCPIPISWNAPEAPPGPGPHLLPSNKCVELFSTTYFCRDLAQYFQGQGP
                     LPKYQATLHFWDRSPSSSHTQENLITVRMEQAFARNLLEKIPEEEKAALFLVQHTEHQ
                     PATLAL"
ORIGIN      
        1 actgagaggg ggctggtgag ggctccccag ggccctgggc tacagggaga gtcaggctgg
       61 tgaatctgaa aataggtttg gcctgagtga gaaactgata ctgggcctgt gggcagggca
      121 ggagggggag ggactgctgc caactagact gttgaggaag gccctttgtg ggcctcagtt
      181 aacctttgtt tttcttgcct ctggccctgc ccacttctgc ttcagctcca cccttgcccc
      241 cagctgcccc acctacccca ctagcaacag gggaatggta gtgagatggt tggtcggctg
      301 gggagataga tgccttaact gccaatgtcc actctgcaga tgcctgggat ctaaacagtc
      361 tgatacaagg aacaggtcat tgaggggatt ctcccaagta acacatctga aacacttcga
      421 cttactaaga ccaatgtccg tggttccctt tcaggatggc cacaggcaaa gcacgctgta
      481 cccgaaagct ccggaactgg atagtggaac aggtggaaag tgggcagttc ccaggggtgt
      541 gctgggacga cgcagccaag accatgttcc ggattccctg gaagcacgca ggcaagcaag
      601 acttccgaga agaccaggat gctgccatat tcaaggcctg ggcactgttt aaggaaaagc
      661 acaaagacgg ggacatagga aaccctgctg tctggaagac tcgcctacgc tgtgccctca
      721 acaagagttc cgaatttgag gaggttcccg agagaggccg gatggatgtt gcagaaccct
      781 acaaagtata tcgaatactg ccagcaggaa ccctccccac ccaaccaaga aaccagaaat
      841 cgccattcaa gcgaagtatc agttctgtgt cacctgagag gggagagtgt aaggaaaatg
      901 ggattgtaag ccactcagac agcggcagca atgtctgtgg tggtggcagc aacggtggcg
      961 gcagcagtga cagctgtggc agcaccagca gctctgagct agaggaagga gctggcacaa
     1021 ctgaagccac cgttcaagag gacccagtgt tcatggagaa tccgcttcct ccgaactcag
     1081 actactcgct gctgctcacc ttcatctatg gcgggcgcgt ggtgcatgag atccaggtgc
     1141 acagcctaga ctgtcggctt gtggctgagc cctcagaccc ggagagcagc atggtgcagc
     1201 aggtggtgtt tcccagacct gacccactgg agcccaccca gagcctgctg aatcagctcg
     1261 agagaggcat cctggtggcc agcaattcca gaggcctctt tgttcagcgc ctctgcccca
     1321 tccccatctc ctggaacgca cccgaggccc cacctgggcc tgggcctcat ctgctgccca
     1381 gcaataagtg tgtggagctc ttcagtacca catacttctg tagagatttg gcccagtact
     1441 tccagggcca gggacctcta cccaagtacc aagcaacact gcatttctgg gacaggagtc
     1501 ctagctctag ccatacccaa gagaatctta tcacggtgcg gatggagcag gcctttgccc
     1561 gaaatttact agagaagatt ccagaagagg agaaagctgc cttgttcctg gtacagcaca
     1621 cagagcacca acctgccact ctcgcactct gatcctcggg tccccgttga aatagacttg
     1681 ttctccacac cgttggtctg cctgctttcg tgatgattct tatcactgtg ggctttccaa
     1741 tgtggccaag agaaagtgca aggataactt ttatcttcaa aaactattct gagagccaga
     1801 ctcgttggtg gatattcata atctcagcac tggattatga gttcaaggac aacctggggg
     1861 agacttctat ttcctttttc taaagctata tcttctttca tttctaagaa actggaaagt
     1921 tccaaagggt gtgatctcag aggaaatttt gctatcctcc caatccctaa ctctaaacct
     1981 aagctgtatg tatgtgtgta tgtatatata taaatatata tttcccccct cagttctcac
     2041 tagaataaaa taaaatttag ctgggtgagg tagtacacac tcggcacata ggagtgtatg
     2101 tgcagaggca ggaagattgt gagttcaaat tcaaggccag ccttggtgat actgtctgtc
     2161 tccaaacagt aaataaaagc ttactaagag agagagatca ggatctgatt cgttaggaga
     2221 gggtggcagg ggttaagatg gagaccaagg tacccagtat ctgggttctc tgtcacatgg
     2281 tgtttctggg cctagccaga gtgccatagt ctctaaccca tggtgatttc tcctgcccta
     2341 gcctcctgag tgttggggtt ctgggtgtac accactatgc ctggccgtac ccccatgtct
     2401 ccctcccttt actctttttt ccagttgacc ttcccgcccc cctttttttt tcagacttga
     2461 cctggtactt cgagggtaag gggcccccac ccaagttaca ggcaactgag attggattgg
     2521 ggtcaacctc taagacaggc actgttgcct acaggcagac agcactatag ccacaaggcg
     2581 gtttgaatga gattagcctc cataggctca tatgtgaatt cttggtcctc agtggaccca
     2641 cctgggaaag gtcaggaggt gtggcgttgg atgaggtgtg tcagtcacta gccatgggct
     2701 ttgaggtttc cctgctagca cactctctgt gtctcgtgct tgtaaatcag atgtaagctc
     2761 tcaaccccag taccattcct ggctgcctgc ctgctgctgt gttcactgcc gttttggtca
     2821 cggactctaa gcctttagaa atgtgagccc caaattaaac tttgtcattc ctaa
//
