LOCUS       XM_006242193            2215 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus interleukin-1 receptor-associated
            kinase 4 (Irak4), transcript variant X1, mRNA.
ACCESSION   XM_006242193
VERSION     XM_006242193.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006242193.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006242193.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2215
                     /gene="Irak4"
                     /note="interleukin-1 receptor-associated kinase 4; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 1 long SRA read, 17 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 114 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:300177"
                     /db_xref="RGD:1305303"
     CDS             146..1531
                     /gene="Irak4"
                     /codon_start=1
                     /product="interleukin-1 receptor-associated kinase 4
                     isoform X1"
                     /protein_id="XP_006242255.1"
                     /db_xref="GeneID:300177"
                     /db_xref="RGD:1305303"
                     /translation="MSKPLTPSTYVRSLNVGILRKLSDFIDPQEGWKKLAVAIKKPSG
                     DDRYNQFHIRRFEALLQTGKSPTCELLFDWGTTNCTVGDLVDLLIQIELFAPATLLLP
                     DAVPQAVHSLPPREAATVAQAHRPCQEKNRTTVTPALAQKLEPSCELPDSSSPGHQSV
                     EFSDTRFHSFSFYELKSITNDFDERPVSIGGNRMGEGGFGVVYKGCVNNTTVAVKKLG
                     AMVEISTEELKQQFDQEIKVMAKCQHENLVELLGFSSDSDNLCLVYAYMPNGSLLDRL
                     SCLDGTPPLSWHMRCKIARGAANGIRFLHENHHIHRDIKSANILLDQDFTAKISDFGL
                     ARASAKLAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLELITGLAAVDEN
                     REPQLLLDIKEEIEDKEKTIEDCTDEKMSDADPASVEAMYSVASQCLHEKKNRRPDIA
                     KVQQLLQETSA"
ORIGIN      
        1 aggaaatggg cgcactcccg gcagaggaag cttggggagc cccacagcct ctgcgcgctg
       61 gtctgctgcc cgggtgtctc gcttgctcgc agtggggagc ataggaagct gacagtccat
      121 caacaggtag agggagaggt agaagatgag caagcctttg acaccgtcaa cgtacgtacg
      181 cagcctcaat gttggaatcc tcaggaagct gtcggatttt attgatcccc aagaaggctg
      241 gaagaaacta gcagtagcta ttaaaaagcc atcgggtgat gacagataca atcagttcca
      301 tataaggaga ttcgaagccc tacttcagac tggaaagagc cccacttgtg aactgctgtt
      361 tgactggggc accacgaact gcacagtggg cgaccttgtg gatcttctga tccagattga
      421 gctgtttgcc cctgccactc tcctgctgcc agatgctgtt ccccaagccg tccacagcct
      481 acctcctaga gaagcagcaa cagtggcgca ggcacacagg ccctgccagg aaaagaacag
      541 gacaaccgta acgcctgcgc ttgcgcagaa gctagaaccc agctgtgagc tgcccgactc
      601 ctccagtcca ggccatcaaa gtgtagaatt tagcgacact cgatttcaca gtttctcatt
      661 ttatgaactg aagagcatca cgaatgactt cgacgagcga cctgtgtcta tcgggggcaa
      721 ccgaatggga gaggggggat ttggagtggt gtacaaaggc tgtgtgaaca acacaaccgt
      781 agcggtgaag aagcttggag caatggtgga aatcagtact gaagaactaa agcaacagtt
      841 tgaccaagaa attaaagtaa tggccaagtg tcagcacgaa aacctggtgg agctgctggg
      901 cttctcgagc gacagtgaca acctgtgctt agtgtatgct tacatgccca atggttcctt
      961 gctagacaga ctgtcctgcc tggacggaac gccaccactt tcctggcaca tgagatgcaa
     1021 gattgctcgg ggtgcagcaa acggcatccg ttttttgcat gaaaatcatc atattcacag
     1081 agatattaaa agtgcaaata tcttactaga ccaagacttt actgccaaaa tatctgactt
     1141 tgggcttgca cgggcttccg cgaagcttgc acaaacggtc atgaccagcc gaattgtggg
     1201 cacaacggct tatatggcac ctgaagcttt gcgaggagaa ataacaccca aatctgacat
     1261 ctacagcttc ggtgtggttt tattggagct gataaccgga cttgcggctg tggatgaaaa
     1321 ccgcgaacct caactactac tggatattaa agaagagatt gaagacaagg agaagacgat
     1381 cgaagattgc acagacgaga agatgagcga tgcggaccct gcgtcggtcg aggcgatgta
     1441 ctctgttgct agccagtgtc tgcacgagaa gaaaaacaga cggccagaca ttgcaaaggt
     1501 tcaacagctg ctacaagaga cctctgcata aaactaatga agtaaacata gacgttttta
     1561 cttcgtggtc ctggagaccg gaaaagcact ttgacactga gctgcatcac ttgcctattg
     1621 tttgcgtttg tttttgtttt tcctgaacgt gctttgtctt taacaaggca gcatggtgcg
     1681 atgtactggt tagttgatga atgtgtcggc ctggggcaga agtggcggtt gcatggtagc
     1741 acttggcccc gcccacttag tacggagctc atttcaacat taccagtgta cagtgaacta
     1801 aagattcagg aaatcagccc tgtgctttac agagatccta gggttactgg ggagtggagg
     1861 aggtgaggta agacagggtt tctctgtgta cccctgaatg tcctggaact tgctctgtag
     1921 accaggctgg ccttgaactc agcaatctgc ctgcctctgc ctacttcatg ttgggattga
     1981 aggtgtgtgc caccaccttc cagctgggga tcgaggtttg aagctcagca aaccccacta
     2041 gtaatttcct gcaaagcttt ggaccagctc ttagctacca taagccttag ttttggcttt
     2101 tgttttttgt tatgaactct gtgctcctgt aaataactcc tcacctatgt ccctgtaagg
     2161 aacctctccc cacagtccct ataaccccaa ctaaactcgt tggttcaacc atgta
//
