LOCUS       XM_039079136            2575 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus interleukin-1 receptor-associated
            kinase 3 (Irak3), transcript variant X8, mRNA.
ACCESSION   XM_039079136
VERSION     XM_039079136.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039079136.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2575
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2575
                     /gene="Irak3"
                     /note="interleukin-1 receptor-associated kinase 3; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 16 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:314870"
                     /db_xref="RGD:1308846"
     CDS             1465..2448
                     /gene="Irak3"
                     /codon_start=1
                     /product="interleukin-1 receptor-associated kinase 3
                     isoform X7"
                     /protein_id="XP_038935064.1"
                     /db_xref="GeneID:314870"
                     /db_xref="RGD:1308846"
                     /translation="MAGPCGARGTLSPHSLLFDLPPALLGELCTILDSCDGPLGWRGL
                     AERLSNSWLDVRHIEKYVHQGKSGTRELLWSWAQKNKTIGDLLQVLHEMGHQRAIHLI
                     MNYGVNWTPPVQTHHELRFPNLPPNSKPVCRESDPGPLELANVTVDNVLVPEHNERGV
                     VLHKTPISFQSILEGTKHFHKDFLIGEGEIFEVYRVEIRNQTYAVKLFKQEKTMQLKK
                     HWKRFLSELEVLLLFNHPHILELAAYFTEMEKLCLVYPYMSNGTLFDRLQCTNGTTPL
                     SWHVRISVLIGIAKAIQCLHNTRPCAVICGNISRYVNAGARNTSSFFLPVV"
ORIGIN      
        1 atgcaaacat tttgagtgtt gctgttatta ttacggagag gattttaaac atcctctgac
       61 ggcccataca ctaaagcttg gttgccagcc tacatacatt gctggtaggt gattaaacct
      121 agtggatcta gggggactta gtggaaagaa atcagatctc ttgaagggaa ttttggcacc
      181 ctggccctgc ccggcttccc ccacctctct ctcttttcct gataccatga accacaaact
      241 ccaaccatgg agcttcgctg tttggttatg aaccaaacaa cctttgaatc tgttctgtgg
      301 ggcattttgt cagaaagcta acacaatcac acatggcgat ttcctatgca gacataggtc
      361 tcagattgtt ttctcagctc tagaaagtca aaaagtaacc tacgccaatc ttctcttccc
      421 gctaatgctt agcatagtgg cacaggggtc cttttaggcg tgtagtctga taaaaccata
      481 gtcgttagga cgaagagact tcagaaattt cgttcaaaca gttctagttt acgagctttt
      541 acagttttta cgggaattca cacagtgggt attgaacgcc caggcaccat tgctgctgat
      601 agccaggggg cgctattcca aagagggaga tctggggttt caaacagccg ctggattttc
      661 aagtggttgg ttaccactcc attttcccac ctcctttgaa gaacctcttc gtctactgac
      721 gaaacatcca tacggttccc gcggtgggtc gttacagcgt aaacggtaga gtatttcagg
      781 acaccagtca atgtttctta aacttcgtgt tgcaagttcg ctgaagcact gggaggaagg
      841 aaaaggagac tgcagtaaaa ccaagtggca ctgtggcaga ggttgccctc tgtagcaagg
      901 acgagcaggg ttttttttgc cctggtttgg cctgttcgtt gtggttttct tttacgtcca
      961 ttctcccccc agtgtgttca cgttttcttc cgtttaaatt tacttggcaa aaaaaccgtg
     1021 tttctcggcg agtacgtatt tctttcctga ccggacaaag aaaactttaa aagatgtacc
     1081 gaaaccctct ctgatccagt cgtggccagg aggccgccca tcccagggca gcagaggggt
     1141 ggcggctttc ccggattcca gccgctgccc ccgccctcat tttcttggct ggtctcctgg
     1201 gtcacgtccc aaggcgagga ctgacagaac ggttcataac aagaggacag gggaacggtg
     1261 cgctagaggc cggggcagcc caggtctcgc aggggcatcc ctggggagag gctccctgcg
     1321 tcacgtggga cccgccctgc gactgcccgg gcgtggagtg ttgcaagctc cgggcagccg
     1381 tcgtggagct gaatttccgc ggttgtgaaa ggaggtggca gcggcgacgt ctctgcttct
     1441 cagcgtgggg tccggggctc cgcgatggcc ggcccgtgcg gggcccgtgg tacgctgtcg
     1501 ccacactcgc tgctcttcga cctgccgccc gcgctgctgg gcgagctgtg cacgatcctg
     1561 gatagctgcg atggtccgct gggctggcgg ggcctggcgg agcgactttc aaacagctgg
     1621 ctggatgttc gtcatattga aaaatatgta caccaaggta aaagtggaac aagagaattg
     1681 ctgtggtcct gggcgcagaa aaacaagacc attggcgacc ttttacaggt tctccacgag
     1741 atggggcatc aacgagctat ccatctaatc atgaactatg gagtaaactg gactcctcca
     1801 gtgcagactc atcacgagct tcgatttccc aacttaccac ctaactcgaa gcctgtgtgc
     1861 agagaaagtg accccggacc tctggagcta gccaatgtca cagtggataa tgttcttgtt
     1921 cctgaacata atgaaagagg agtagtactg cataagaccc ctatcagctt ccaaagtatc
     1981 ctagaaggaa ccaaacattt ccacaaagac ttcctaattg gagaagggga gatatttgaa
     2041 gtatacagag tggagattag aaaccaaaca tacgccgtta aattatttaa acaggagaaa
     2101 acaatgcagc ttaagaagca ctggaagagg tttttgtcgg aactggaagt tttactcctg
     2161 ttcaatcacc cccacatact agagctggct gcatatttca cagagatgga gaaactttgt
     2221 ctggtttatc cctatatgag caatgggaca cttttcgaca gattacagtg cacaaatggc
     2281 acaaccccac tttcctggca cgttcgaatc agtgtgttga taggaatagc caaagccatc
     2341 cagtgcttgc acaacacccg gccgtgtgcc gtcatctgtg gcaacatttc cagatatgta
     2401 aatgcaggtg caagaaatac ctcgagcttc ttcctccctg ttgtctgaaa tcatccagaa
     2461 atatcacttt gtcggcgcca gcaccgacac ggtaccgaga atctaccgag aattgggcga
     2521 aagcctgtgg gatgaaagaa gcacacacac acaggttatt cgtgtcaagc cagaa
//
