LOCUS       XM_039079135            2271 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus interleukin-1 receptor-associated
            kinase 3 (Irak3), transcript variant X6, mRNA.
ACCESSION   XM_039079135
VERSION     XM_039079135.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039079135.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2271
                     /gene="Irak3"
                     /note="interleukin-1 receptor-associated kinase 3; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 29 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:314870"
                     /db_xref="RGD:1308846"
     CDS             184..1275
                     /gene="Irak3"
                     /codon_start=1
                     /product="interleukin-1 receptor-associated kinase 3
                     isoform X6"
                     /protein_id="XP_038935063.1"
                     /db_xref="GeneID:314870"
                     /db_xref="RGD:1308846"
                     /translation="MEKLCLVYPYMSNGTLFDRLQCTNGTTPLSWHVRISVLIGIAKA
                     IQCLHNTRPCAVICGNISSANILLDDQFQPKLTDFAAAHFRPHLEQQSSTINMTGSGR
                     KHLWYMPEEYIRQGRLTIKTDVYSFGIVIMEVLTGCKVVLDDPKHVQLRDLLMELVEK
                     RGLDSCLSFLDRKIPPCPRNFSAKLFSLAGQCVATRAKLRPTMDEVLNTLESTQPSLY
                     FAEDPPTSLKSFRCPSPLFLDNVPSIPVEDDENQNNYPVPPKEALRTDRVTQKTPFEC
                     SQSEVTFLGLDRNKGNRGSEAACNMPSSSCEECWCPELAEASQDLRPTVISLGSSWEV
                     PGYSYGSKPMEKRCSSGLFCSEHEQSKRQ"
ORIGIN      
        1 cccctatcag cttccaaagt atcctagaag gaaccaaaca tttccacaaa gacttcctaa
       61 ttggagaagg ggagatattt gaagtataca gagtggagat tagaaaccaa acatacgccg
      121 ttaaattatt taaacaggtt caatcacccc cacatactag agctggctgc atatttcaca
      181 gagatggaga aactttgtct ggtttatccc tatatgagca atgggacact tttcgacaga
      241 ttacagtgca caaatggcac aaccccactt tcctggcacg ttcgaatcag tgtgttgata
      301 ggaatagcca aagccatcca gtgcttgcac aacacccggc cgtgtgccgt catctgtggc
      361 aacatttcca gtgcaaacat actcttggat gaccagttcc aacccaaact aaccgatttt
      421 gccgcggcgc acttccgacc ccacctagag cagcagagtt ctaccataaa tatgaccggc
      481 agcggcagga agcatctgtg gtacatgccg gaagaataca tcagacaggg aagactcacc
      541 attaaaacgg acgtctacag ctttggaatc gtgatcatgg aagttctaac gggctgcaaa
      601 gtggtgctgg atgatccaaa acatgttcag ctgagggacc tcctcatgga actggtggag
      661 aagagaggcc tagactcctg cctctcgttc ttggacagga agataccgcc ctgtcctcgg
      721 aacttctctg ccaagctctt ctctctggcg ggccagtgtg tggcaactcg ggccaagtta
      781 agacccacga tggacgaagt cctgaacact ctggagagca cacagcctag cttgtatttt
      841 gcagaagacc ctcccacttc cttgaagtcc ttcaggtgtc cttctcctct gttcttggat
      901 aatgttccaa gtattccagt agaagatgat gaaaaccaga ataactatcc agtacctccc
      961 aaggaagctt tgaggacaga tagagtgaca cagaaaaccc cctttgaatg cagccagtct
     1021 gaggtcacct ttctgggctt ggatcgaaac aaagggaaca ggggaagtga agctgcttgc
     1081 aacatgccca gttcttcttg tgaggaatgc tggtgcccag agcttgcgga agcatcccag
     1141 gacttaaggc ctactgtgat cagtttgggg tcttcttggg aagtaccagg ctattcttat
     1201 gggagcaagc caatggagaa gaggtgttcc tctggactct tttgcagtga gcacgaacag
     1261 tccaaaaggc agtgaattca ccagaagata aagcacatat cgctaaaggc acctgagcaa
     1321 acagcgttac atcaccgtgg aaagacaggg ggtctgagct ctgtgagtaa ggccaaggga
     1381 ccaacgggtg gagaatttga atagtgcaga ttagcagcaa ggaagtttgt ttcttctcca
     1441 aacagaatgt caagagatgt tttattcggg tgacgtctct cagtcaaatc caagctaaac
     1501 tggagtcgat ctgagttatc caagattttg ggttctgact gtcgaaacct atcaaagagt
     1561 ggcaggaacc ttaagtcgct ctgtcatcat ctgagtgaga cctttgtgta ggcgaccaga
     1621 gaaccaccca cattccagaa ccaggttctc cccaagccct ctccaagtaa acagccagtc
     1681 gtttaccgac agccaaatgt gatacagtgc cattcttcct ctgcgcatgc gccatgccct
     1741 ttataaaacc gaggtcttca gccccaccct ctttctgttc catcctcgct caaaggcagc
     1801 ctttgggcct actgggaggc cacctcaata aatctcccac atgaggtcta ttgcatggtg
     1861 tgacttagca tcacttggtc ctcagatcgt ttccacaaaa gctaaggaat aaacaacaac
     1921 aaaaactcac catcgttgcc accagcactc agtcagtctt tctactaggg attggatggt
     1981 ctattggctt cccacagtca caggaaacgt tgctcacatg gaaaggtgta ggaaatgtct
     2041 aatttgtaag tggtgacagg agccttttga aagaattgtg attttaagtt gcttctcttt
     2101 tgttgatcgc tggttaaccc gtcaatctgg aagtgagcca agtcaccctt gctacggcat
     2161 gttctgtgtg gagagggaat tccagtccaa agtctgcatt tctgtactta cattcttaga
     2221 agagttaccc gcgttatgcc aattgttata aaaactatat ttaaaaaaac a
//
