LOCUS       XM_039079131            3992 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus interleukin-1 receptor-associated
            kinase 3 (Irak3), transcript variant X2, mRNA.
ACCESSION   XM_039079131
VERSION     XM_039079131.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3992
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3992
                     /gene="Irak3"
                     /note="interleukin-1 receptor-associated kinase 3; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 19 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:314870"
                     /db_xref="RGD:1308846"
     CDS             1557..2996
                     /gene="Irak3"
                     /codon_start=1
                     /product="interleukin-1 receptor-associated kinase 3
                     isoform X2"
                     /protein_id="XP_038935059.1"
                     /db_xref="GeneID:314870"
                     /db_xref="RGD:1308846"
                     /translation="MVRWAGGAWELANVTVDNVLVPEHNERGVVLHKTPISFQSILEG
                     TKHFHKDFLIGEGEIFEVYRVEIRNQTYAVKLFKQEKTMQLKKHWKRFLSELEVLLLF
                     NHPHILELAAYFTEMEKLCLVYPYMSNGTLFDRLQCTNGTTPLSWHVRISVLIGIAKA
                     IQCLHNTRPCAVICGNISSANILLDDQFQPKLTDFAAAHFRPHLEQQSSTINMTGSGR
                     KHLWYMPEEYIRQGRLTIKTDVYSFGIVIMEVLTGCKVVLDDPKHVQLRDLLMELVEK
                     RGLDSCLSFLDRKIPPCPRNFSAKLFSLAGQCVATRAKLRPTMDEVLNTLESTQPSLY
                     FAEDPPTSLKSFRCPSPLFLDNVPSIPVEDDENQNNYPVPPKEALRTDRVTQKTPFEC
                     SQSEVTFLGLDRNKGNRGSEAACNMPSSSCEECWCPELAEASQDLRPTVISLGSSWEV
                     PGYSYGSKPMEKRCSSGLFCSEHEQSKRQ"
ORIGIN      
        1 agtgttgctg ttattattac ggagaggatt ttaaacatcc tctgacggcc catacactaa
       61 agcttggttg ccagcctaca tacattgctg gtaggtgatt aaacctagtg gatctagggg
      121 gacttagtgg aaagaaatca gatctcttga agggaatttt ggcaccctgg ccctgcccgg
      181 cttcccccac ctctctctct tttcctgata ccatgaacca caaactccaa ccatggagct
      241 tcgctgtttg gttatgaacc aaacaacctt tgaatctgtt ctgtggggca ttttgtcaga
      301 aagctaacac aatcacacat ggcgatttcc tatgcagaca taggtctcag attgttttct
      361 cagctctaga aagtcaaaaa gtaacctacg ccaatcttct cttcccgcta atgcttagca
      421 tagtggcaca ggggtccttt taggcgtgta gtctgataaa accatagtcg ttaggacgaa
      481 gagacttcag aaatttcgtt caaacagttc tagtttacga gcttttacag tttttacggg
      541 aattcacaca gtgggtattg aacgcccagg caccattgct gctgatagcc agggggcgct
      601 attccaaaga gggagatctg gggtttcaaa cagccgctgg attttcaagt ggttggttac
      661 cactccattt tcccacctcc tttgaagaac ctcttcgtct actgacgaaa catccatacg
      721 gttcccgcgg tgggtcgtta cagcgtaaac ggtagagtat ttcaggacac cagtcaatgt
      781 ttcttaaact tcgtgttgca agttcgctga agcactggga ggaaggaaaa ggagactgca
      841 gtaaaaccaa gtggcactgt ggcagaggtt gccctctgta gcaaggacga gcagggtttt
      901 ttttgccctg gtttggcctg ttcgttgtgg ttttctttta cgtccattct ccccccagtg
      961 tgttcacgtt ttcttccgtt taaatttact tggcaaaaaa accgtgtttc tcggcgagta
     1021 cgtatttctt tcctgaccgg acaaagaaaa ctttaaaaga tgtaccgaaa ccctctctga
     1081 tccagtcgtg gccaggaggc cgcccatccc agggcagcag aggggtggcg gctttcccgg
     1141 attccagccg ctgcccccgc cctcattttc ttggctggtc tcctgggtca cgtcccaagg
     1201 cgaggactga cagaacggtt cataacaaga ggacagggga acggtgcgct agaggccggg
     1261 gcagcccagg tctcgcaggg gcatccctgg ggagaggctc cctgcgtcac gtgggacccg
     1321 ccctgcgact gcccgggcgt ggagtgttgc aagctccggg cagccgtcgt ggagctgaat
     1381 ttccgcggtt gtgaaaggag gtggcagcgg cgacgtctct gcttctcagc gtggggtccg
     1441 gggctccgcg atggccggcc cgtgcggggc ccgtggtacg ctgtcgccac actcgctgct
     1501 cttcgacctg ccgcccgcgc tgctgggcga gctgtgcacg atcctggata gctgcgatgg
     1561 tccgctgggc tggcggggcc tgggagctag ccaatgtcac agtggataat gttcttgttc
     1621 ctgaacataa tgaaagagga gtagtactgc ataagacccc tatcagcttc caaagtatcc
     1681 tagaaggaac caaacatttc cacaaagact tcctaattgg agaaggggag atatttgaag
     1741 tatacagagt ggagattaga aaccaaacat acgccgttaa attatttaaa caggagaaaa
     1801 caatgcagct taagaagcac tggaagaggt ttttgtcgga actggaagtt ttactcctgt
     1861 tcaatcaccc ccacatacta gagctggctg catatttcac agagatggag aaactttgtc
     1921 tggtttatcc ctatatgagc aatgggacac ttttcgacag attacagtgc acaaatggca
     1981 caaccccact ttcctggcac gttcgaatca gtgtgttgat aggaatagcc aaagccatcc
     2041 agtgcttgca caacacccgg ccgtgtgccg tcatctgtgg caacatttcc agtgcaaaca
     2101 tactcttgga tgaccagttc caacccaaac taaccgattt tgccgcggcg cacttccgac
     2161 cccacctaga gcagcagagt tctaccataa atatgaccgg cagcggcagg aagcatctgt
     2221 ggtacatgcc ggaagaatac atcagacagg gaagactcac cattaaaacg gacgtctaca
     2281 gctttggaat cgtgatcatg gaagttctaa cgggctgcaa agtggtgctg gatgatccaa
     2341 aacatgttca gctgagggac ctcctcatgg aactggtgga gaagagaggc ctagactcct
     2401 gcctctcgtt cttggacagg aagataccgc cctgtcctcg gaacttctct gccaagctct
     2461 tctctctggc gggccagtgt gtggcaactc gggccaagtt aagacccacg atggacgaag
     2521 tcctgaacac tctggagagc acacagccta gcttgtattt tgcagaagac cctcccactt
     2581 ccttgaagtc cttcaggtgt ccttctcctc tgttcttgga taatgttcca agtattccag
     2641 tagaagatga tgaaaaccag aataactatc cagtacctcc caaggaagct ttgaggacag
     2701 atagagtgac acagaaaacc ccctttgaat gcagccagtc tgaggtcacc tttctgggct
     2761 tggatcgaaa caaagggaac aggggaagtg aagctgcttg caacatgccc agttcttctt
     2821 gtgaggaatg ctggtgccca gagcttgcgg aagcatccca ggacttaagg cctactgtga
     2881 tcagtttggg gtcttcttgg gaagtaccag gctattctta tgggagcaag ccaatggaga
     2941 agaggtgttc ctctggactc ttttgcagtg agcacgaaca gtccaaaagg cagtgaattc
     3001 accagaagat aaagcacata tcgctaaagg cacctgagca aacagcgtta catcaccgtg
     3061 gaaagacagg gggtctgagc tctgtgagta aggccaaggg accaacgggt ggagaatttg
     3121 aatagtgcag attagcagca aggaagtttg tttcttctcc aaacagaatg tcaagagatg
     3181 ttttattcgg gtgacgtctc tcagtcaaat ccaagctaaa ctggagtcga tctgagttat
     3241 ccaagatttt gggttctgac tgtcgaaacc tatcaaagag tggcaggaac cttaagtcgc
     3301 tctgtcatca tctgagtgag acctttgtgt aggcgaccag agaaccaccc acattccaga
     3361 accaggttct ccccaagccc tctccaagta aacagccagt cgtttaccga cagccaaatg
     3421 tgatacagtg ccattcttcc tctgcgcatg cgccatgccc tttataaaac cgaggtcttc
     3481 agccccaccc tctttctgtt ccatcctcgc tcaaaggcag cctttgggcc tactgggagg
     3541 ccacctcaat aaatctccca catgaggtct attgcatggt gtgacttagc atcacttggt
     3601 cctcagatcg tttccacaaa agctaaggaa taaacaacaa caaaaactca ccatcgttgc
     3661 caccagcact cagtcagtct ttctactagg gattggatgg tctattggct tcccacagtc
     3721 acaggaaacg ttgctcacat ggaaaggtgt aggaaatgtc taatttgtaa gtggtgacag
     3781 gagccttttg aaagaattgt gattttaagt tgcttctctt ttgttgatcg ctggttaacc
     3841 cgtcaatctg gaagtgagcc aagtcaccct tgctacggca tgttctgtgt ggagagggaa
     3901 ttccagtcca aagtctgcat ttctgtactt acattcttag aagagttacc cgcgttatgc
     3961 caattgttat aaaaactata tttaaaaaaa ca
//
