LOCUS       NM_001399437            4675 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus IQ motif containing N (Iqcn), mRNA.
ACCESSION   NM_001399437 XM_017600333
VERSION     NM_001399437.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4675)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Jan 7, 2022 this sequence version replaced XM_017600333.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.3288696.1,
                                           SRR26360186.713290.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-120               JAXUCZ010000016.1  18765267-18765386   c
            121-245             JAXUCZ010000016.1  18760696-18760820   c
            246-3632            JAXUCZ010000016.1  18756878-18760264   c
            3633-4675           JAXUCZ010000016.1  18750492-18751534   c
FEATURES             Location/Qualifiers
     source          1..4675
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..4675
                     /gene="Iqcn"
                     /note="IQ motif containing N"
                     /db_xref="GeneID:102547294"
                     /db_xref="RGD:7549926"
     exon            1..120
                     /gene="Iqcn"
                     /inference="alignment:Splign:2.1.0"
     exon            121..245
                     /gene="Iqcn"
                     /inference="alignment:Splign:2.1.0"
     exon            246..3632
                     /gene="Iqcn"
                     /inference="alignment:Splign:2.1.0"
     CDS             267..4592
                     /gene="Iqcn"
                     /note="mucin-17-like"
                     /codon_start=1
                     /product="IQ domain-containing protein N"
                     /protein_id="NP_001386366.1"
                     /db_xref="GeneID:102547294"
                     /db_xref="RGD:7549926"
                     /translation="MAAMQPAAQLQFQNLMSPSRPCLPQPTPIHQEKVAKLRPQIQND
                     SYPPKELTVLASQEVPRLRAVVESQAFRNILVDEMDMMVSRAATVIQANWKGYRLRQK
                     LISQMTAAKAIQEAWRRFSTRRLMHSNKLTAKKAKREDDGDIPYHQPQQVRFHAPEDQ
                     SPLMVTKETQFPSSDNLVSSQATAGPCASRVPRGGLDRHTGPKHQPCMLTKTFQSSCL
                     MRHLEGDSVKIRHVASKTIKVGTLEPAATGRYGQAIHGSLKTQTQTHTETDVPKVPLH
                     IYQINKVPTKVCPAAAAAPKSPATMSTAPKSAPQTRPSSPATVTTVTTVTKMPAPTSP
                     TSPMIRPLVPVPPNSSLSSTTPQMQVRSMVPGVRAQPPVSAVSPTIKALPRLGTFVTK
                     APLQTGPGFAVTKNLIQTRPVTRSQAQTCAVSTPSKTCQSSPTVKPSPQTRLAAMITK
                     TPAQLRSVAAVFRTLCGGSTEAAVPSSPKSSSQSPVIAGNTASQVHLTNPKAKVTVST
                     KQTPAVVKVASQSYLAEGKGRCGPQGNLDIIPKPPPAKSPLEVEKMKPCPARASKKEA
                     ALKTNTTIATRALSWTKVMEDRSKALTQIEQRAEIVKVHFRVYMPEEITVTLSQAQLA
                     VPLTKTCPQTRPSPCHARTLLASPCCKALSQSCTPSRLAPGTPEGRRPPVGLSASLSS
                     SPLAAHLMSLTAQLQPAGEQARSVSRDHPTTSRPTSACPQSRSSGMTSVPPEVYPHTY
                     SHISAPQHPMASILTKNSSQLRPPAEHVKTMNAKTAKAACQVCPSAKLNKAPSLAQLI
                     TCLAKVPSQAQIATETAKCLLTAHPPTDLSSKTQSQTFLSTSKASVQLWQHLGTLSTG
                     PRAKPDDRSVAQPQPHSHAPNKTVQNSRSVATDPQGMLVPLMTPSGHPVCNAESWGDS
                     GRPRTPPPSPMPNQAVSCHEDLAASIASLCADLVAMLGSPEDLRALLVKTLSQGEVRT
                     ALSQALSREVLGPSVVKAMPQGMLGMALMKALSWGELGISLSRALSRGELRPELSKAT
                     QGKLAEVLCKALTEDERATLSQALCQGELGAVFTQSLAQMAQRTGAFLPKASSKTVGS
                     RMTTAPAPMEVTCSGSLSVAWGPTMGPVGARCSKGPVDAGLAAGQSWNSKVPNVSVRA
                     TAHAGAPPGIWPSRGHKPWDPSGAEAALDRKPSAELLMSVQAMEKVVVQAVVTIQACT
                     RGYLVRRTVKVWHQWATIIQATWRGYRVRRNLERLFRATTIIQAAWRGYSIRRARTRH
                     ILLPTAWPEHGGRTQGNLDSRSSSEHRCFLSCQPDVCSVCQSLGPPVESPPSVVMLVG
                     SQPRTCHVCGHTLSTRVVQGFGQGASVHSVSRWTSASQQSTLSQQHRACTIIQAAWKG
                     YRTRRQLRQQQSAAKMVQAMWRGHYTRSCLTTDALLGTGGPWSISRDISRRTSRAYSL
                     HWPGV"
     exon            3633..4675
                     /gene="Iqcn"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgccccggt cccaaggctg ggctatcagg gctggtggct tcagctctgg ggataggtga
       61 gtgggctggt gggggaccac actcagctct tgctaagaat gtctgcgtcc tctggctgtg
      121 aaccagccca gagcgctgct gtgtacattt cttggaatga agaactgaag acagcctccc
      181 cttacaggct ggcttccaag attacacctt cttctgctcc ttttccaact ctatgaccct
      241 ccaagacttc tctggccggc tcaggaatgg cagcaatgca gcctgcagct cagctccagt
      301 tccagaacct catgtcacca agcaggccat gtctccctca gcctaccccc attcaccaag
      361 agaaagtggc caagctacgt cctcagatcc agaatgactc ctatccgccc aaggagctga
      421 cagtgttagc gtcacaggaa gtgccccgcc tgcgggcggt ggtggagagc caggccttca
      481 ggaacatcct ggtagatgag atggacatga tggtctcacg ggcagccact gtcatccaag
      541 ccaactggaa gggctaccgg ctgcggcaga aactcatctc ccagatgaca gcagccaagg
      601 ccatccagga ggcctggcga cgcttcagca cccgcaggct gatgcactcc aacaagctga
      661 cggctaagaa agctaagagg gaggatgatg gggacatccc ttaccaccag ccacagcagg
      721 tgcgctttca tgccccagag gaccagtcac cactcatggt gactaaagag actcagttcc
      781 catcatctga caacctggtc tcctcacaag ccacagcagg cccctgtgct agcagagtcc
      841 ccagaggtgg cctcgacaga cacacaggtc ccaagcatca gccctgcatg ttgaccaaga
      901 cttttcagag ctcttgtctc atgagacact tggaggggga cagtgtgaag atcaggcatg
      961 tggcttccaa gaccatcaaa gtggggaccc tagagccagc agcaacaggg agatatggcc
     1021 aggccattca tggatccctg aagacccaga cccagaccca cacagaaaca gatgttccca
     1081 aggtcccact gcatatatat caaatcaaca aggtccctac caaggtgtgt ccagcggctg
     1141 ctgctgcccc caaatcccca gccacaatgt ctacagcacc aaagagtgca ccacagacac
     1201 gcccctcatc cccagcaaca gtcacgacag tcacgacagt cacgaagatg ccagctccaa
     1261 ccagcccaac ctctccgatg atcaggccct tggttcctgt gccacccaac tcttcactct
     1321 ctagtactac accgcagatg caggttcgtt ccatggtccc tggggtcagg gcacagcccc
     1381 cagtgtctgc tgtgtcccct acaatcaagg ccttaccacg cttaggaact tttgtcacca
     1441 aggccccact gcaaactggc cctgggttcg cagtgacaaa gaacttaatt cagacacgcc
     1501 cggtgaccag aagccaagct cagacatgcg cagtgtccac tccatccaaa acctgccagt
     1561 caagccccac ggtcaagcct tcaccccaga cacgcctggc agccatgata accaagaccc
     1621 cagctcaatt acgatccgta gctgctgtct tccggaccct gtgtggtggc tcaactgagg
     1681 cggcggtacc ctcaagtccc aagagttcat ctcaaagtcc ggtgattgcc ggtaacactg
     1741 catcccaggt ccacttaact aacccaaagg ccaaggtcac cgtgagcacc aagcagaccc
     1801 ccgccgttgt caaggtggcc tctcagtcgt acttggccga ggggaagggc aggtgcgggc
     1861 cccagggaaa tctagacatt attcctaagc ctcctccagc caagtcgcca ctggaagtag
     1921 aaaagatgaa gccttgtcct gcaagggcct ccaagaagga agcagctctc aagaccaaca
     1981 caaccattgc aaccagggct ctgtcttgga caaaagtgat ggaagacagg agtaaggccc
     2041 tgactcagat cgagcagagg gcagagattg ttaaggttca cttcagggtg tacatgcccg
     2101 aggagataac tgtgaccctg tcccaggccc agctggctgt gcccctgacc aagacctgcc
     2161 cccaaacccg gccatccccc tgccatgccc gaactctgtt ggcctcaccc tgctgtaaag
     2221 ctctgtccca gtcttgcaca ccatccaggc tggccccagg cacacctgaa ggacggcgtc
     2281 cacctgtagg tctctctgcc tctctatcct cctcgccact ggctgcacac ctgatgtccc
     2341 tcacagccca gctccaacct gccggtgaac aggccagatc tgtgtctcga gatcatccga
     2401 ccacgtcacg tccaacctcg gcttgcccgc agtcacgctc ctctgggatg acctcagtcc
     2461 ctcctgaggt atacccacac acatattcac acatctctgc tccccagcac cccatggcct
     2521 ctatcctgac aaaaaactcc tctcagctgc gtccacctgc tgagcatgtc aagaccatga
     2581 acgctaaaac cgccaaggca gcatgccagg tctgtccatc cgctaagctt aacaaggccc
     2641 cgtccctggc ccagctcatt acgtgtctgg ctaaggttcc atcccaggcc cagatagcca
     2701 cggaaacagc caagtgcctc ttgactgccc accctcccac tgaccttagt agcaagaccc
     2761 agtcgcagac attcctgagc acttccaagg catctgtcca gttgtggcaa catttgggga
     2821 cacttagcac cggaccccgt gccaagccag atgacaggag tgtagcccag ccccagcccc
     2881 atagccatgc accaaacaag accgtgcaga actctcgttc agtggccaca gatccccaag
     2941 gcatgctggt acctctgatg acacccagtg gacaccctgt gtgcaatgca gaatcctggg
     3001 gtgacagtgg acggccacgg accccacctc catcccctat gcccaaccag gcagtgtcat
     3061 gccacgaaga cctggcagca tccatcgcat ctctatgtgc agacttggtg gccatgctgg
     3121 gctcccctga ggacctgcgg gcactcctgg tcaagacact ttctcagggg gaagtaagga
     3181 cagcattgag ccaggccctg tcccgggagg tcctgggacc atctgtggtc aaggccatgc
     3241 ctcaaggcat gctgggaatg gcactgatga aggcactgtc atggggtgaa ttgggcatct
     3301 ccctgtcccg ggccctgtct cgtggtgagc tgcgtccaga actcagcaag gccacacagg
     3361 gaaagctggc cgaggtcctg tgcaaagcct tgacagaaga cgagagggcc acactcagcc
     3421 aggcactgtg ccagggtgag ctgggtgctg tcttcactca gtccttggcc caaatggccc
     3481 agaggacagg tgccttcctc cctaaggcct cctcaaaaac agtggggagt cggatgacca
     3541 cagcgcctgc cccaatggag gtgacttgca gcgggagtct gtcggtggcg tggggaccta
     3601 cgatgggtcc tgtaggagca cggtgtagca agggccctgt ggatgccggc ctggctgctg
     3661 gccagtcatg gaattccaaa gtccccaacg tatcggtcag agccacagca catgctgggg
     3721 cacctccagg catatggccc agcaggggcc acaagccatg ggacccctct ggtgcagagg
     3781 cagcgctgga ccgcaagcct tcagctgagc tgctgatgtc agtacaagct atggagaaag
     3841 ttgtcgtcca ggccgttgtc accatccaag cttgcactcg tggctacctg gtgcgccgta
     3901 ctgtgaaagt gtggcatcaa tgggccacca tcatccaagc tacgtggcgt ggttaccgtg
     3961 tacgtcggaa tctggaaagg ctgttcagag ccaccaccat catccaggct gcctggcgtg
     4021 gctattccat tcgccgggcc cggactcgcc atatcctgct tcctactgcg tggccagagc
     4081 acggtggcag aacccaggga aacttggaca gcagaagcag ctcagagcac cgatgcttcc
     4141 tatcctgtca gccagatgtc tgcagtgtct gccaatccct gggtccccca gtagagagtc
     4201 cacccagcgt tgtgatgctt gtggggtccc agccacgcac ttgtcacgtg tgtggccaca
     4261 cgctgtccac gcgcgtggtg cagggctttg gccagggcgc ctcagtccac tccgtctctc
     4321 gatggacctc agcatcccag cagagcactc ttagccagca gcacagagcg tgcaccatca
     4381 tccaggcagc ctggaagggc tacaggaccc gccggcagct ccgtcagcag cagtctgcag
     4441 ccaagatggt tcaggccatg tggaggggac attatactcg aagctgcctc accacggatg
     4501 cactcctggg aacaggaggc ccgtggagca tctccaggga catttcacgc cgtacctcaa
     4561 gggcttactc tttgcattgg cctggcgtct aggcccctcc ctggctgtgg gcaagagaca
     4621 ccatcatggc cacgtggccc catgagtctt gtgaataaag catgctacag cctga
//
