LOCUS       XM_039081112            5306 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus IQ motif containing H (Iqch),
            transcript variant X2, mRNA.
ACCESSION   XM_039081112
VERSION     XM_039081112.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081112.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5306
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5306
                     /gene="Iqch"
                     /gene_synonym="RGD1310670"
                     /note="IQ motif containing H; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 2 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:300776"
                     /db_xref="RGD:1310670"
     CDS             98..3355
                     /gene="Iqch"
                     /gene_synonym="RGD1310670"
                     /codon_start=1
                     /product="IQ domain-containing protein H isoform X1"
                     /protein_id="XP_038937040.1"
                     /db_xref="GeneID:300776"
                     /db_xref="RGD:1310670"
                     /translation="MAQAQELNDPIGSILIQVHGDLHQLKEKLIQFSAEETRDPLDIQ
                     NLETAIQRTETGLKIHIERYLGIVNQEVIMTPVKSLDSPINSKWAIPTVIDQKSFIFP
                     MAPDKLWGLQKHRGSLPRGFTRAKPKVELNKKIMQDPENMHHRAAVNVSYGISLPRIK
                     QRKAHDKVRRVRKGSTISNLTVLPSSHRTDPHFIPIPVLQKDASKGILSMIERGLIPP
                     AARITFQNPPIKPQALPLHSFDEHRKVSITASFPIAHKPRLASEKVEESQQKQKAKVL
                     THLSTEEHSLPVTGKDKRSRGQPSRKSTRITTPSRIRRSPWDYILPVYNGSVDRAAPD
                     FIAFKTRYKLIWGSIFSFLEQIEKFLKDYAISEAKVRGKSLVSLLPEFELNNKLTKTD
                     VLAVLENPLHIQMLLNLPGQRFKGRDGRTEAAVKIQATWKSYKARTSFISYRQKKWAS
                     GVIALAWLLHCHKTRLKRIVEESRQRHLDNFRIRAKHLAANWSRIRTSRRTIIHIPSL
                     GYSQSVRKHISDLDIEQNRQLGRLCDILDVNVNVIYVCSSPMNDELKLYYKKLLSLQA
                     AVKSGYYGDRSDLQNRFRIITPEAVNIFTKHHMCLATHLMYSPKAIKRIKNLIQGEEA
                     YIVGGILHRDDLAVADMLNVPILASEPELVHLYSGKSGSKRIFDNANVPMPPGVYDIY
                     TYQQLIEQLSQLVTDNLGIRRWVFKMNMEFGGNGTAFCDIPSHLQCYKWVVKESNRFG
                     PEDWKKKWAQESALMKISEELAGVLAQHVQLVNEKQFPTWRKFLHMFLTQGGIIEAYP
                     PADSITNLTVDMLIEPDGEVRVLSMGDQFHADGPFISSGTTMPQTSVDPQVLNSLCLR
                     IGNICKEKDVVGYFSIDLVTFIDPSTLEQQVWTTGLNLSYSDQLAMTQLTLYLTNGYL
                     NCSLSTLEVPRFKEDAEREKKRLSIQAELAPETSRYAVMSTQLKHDNLSLIFYYVFLQ
                     MCKAHGIGYDLEDRQGTVFILYESLKRYKLGMITIGVDLQGALMTFARNLFIIHQEIS
                     APDMQGETNFKTTIDDIETILGVTEENKMIFAGEKRRKEEEESLYEPVEIYTKTV"
ORIGIN      
        1 cgcgcgccgc gttgctatag tgactggtgc ctgcttctag aagcgctccg gagaaggcca
       61 tacctccgga gccaagcgcc ttctgcctgc ctcagtcatg gctcaggccc aggagctcaa
      121 cgaccccatt ggatccatcc taatccaggt ccatggggac ctccatcagt taaaggagaa
      181 attaattcaa ttctcagctg aggagacaag agaccctcta gacattcaaa atcttgagac
      241 agcaattcaa agaactgaaa cggggttaaa gattcacatt gagaggtatc tcggaattgt
      301 aaaccaggag gtgataatga ctcctgtgaa gagcttagac tcccctatca attccaaatg
      361 ggcgattcca actgtaattg accagaaatc ctttattttt cccatggctc ccgataaact
      421 ttggggactt caaaaacatc gcggttcact tccacgcggc tttacaagag caaagccaaa
      481 agtagagttg aacaagaaga tcatgcagga ccctgagaac atgcaccaca gagctgctgt
      541 aaatgtgagc tatgggatca gtttgccacg tattaaacag aggaaagcac atgataaggt
      601 tcggcgggta agaaaagggt ccacgatctc caacctcaca gttctgccat ccagtcatcg
      661 cactgacccc cattttatcc ccatacctgt cttgcaaaag gatgccagta aagggatctt
      721 aagtatgatc gaacgagggc tgatcccccc agcagcaagg attacctttc agaatccacc
      781 cattaaaccc caagcacttc ctctgcatag ctttgatgag catcggaagg tatcaataac
      841 agcctccttt ccgatagctc ataagccacg cctggcttca gaaaaagtgg aggagtctca
      901 acagaaacag aaagccaagg tactcacaca tctaagcacg gaagaacaca gtctacctgt
      961 gacgggaaaa gacaaaaggt caagaggaca acccagtagg aagagcacga ggattactac
     1021 accgtctagg attaggagat caccatggga ttacatcttg cctgtttaca acggctctgt
     1081 agacagggca gccccagact ttatagcatt caaaacacgt tacaaattaa tctggggaag
     1141 cattttttct ttcctggaac aaattgagaa atttctcaag gactatgcaa tatcagaagc
     1201 caaagtaaga gggaagagtc tggtgtccct gcttccagag tttgagctga acaacaaact
     1261 taccaaaact gacgttctgg ctgtgctaga gaacccgctc cacatccaga tgctgctaaa
     1321 tcttcctgga cagaggttca agggccggga cggaaggaca gaggctgccg tcaagatcca
     1381 agccacatgg aaaagttata aggcaagaac ttccttcatt tcttatcgcc agaagaagtg
     1441 ggcctcggga gtgatcgccc tggcatggct tctacattgc cacaaaacaa gactaaagag
     1501 gatagtggag gaatctcgac agagacacct ggataacttc cgaattcgag ccaagcatct
     1561 ggcagccaac tggagtcgca tcaggacctc caggaggact attatccata taccatcatt
     1621 aggatattcc cagtctgtgc gaaaacacat atctgatttg gacatagagc agaacaggca
     1681 gttggggagg ctgtgtgaca tcctagatgt caacgtcaat gtcatctacg tctgctccag
     1741 tcccatgaat gacgagttaa agctgtacta caaaaaactc ctgagtctgc aagcagctgt
     1801 caaatcgggc tactatgggg ataggtctga cctgcaaaac aggttcagaa ttatcacccc
     1861 tgaagctgta aacatcttca ctaaacatca catgtgcctg gctactcacc tgatgtacag
     1921 tcccaaggca atcaaaagaa taaaaaatct catccaagga gaagaggcct acatcgtggg
     1981 cgggatcctc cacagagatg atttagctgt ggctgacatg ttgaatgtac ccatcctggc
     2041 ctcagagcct gagctggttc acctttacag tggcaagtct ggaagtaaac ggatctttga
     2101 taacgctaat gtgccaatgc ctcctggagt atatgacatc tatacttacc agcagctgat
     2161 agaacaattg agtcagttgg tgactgataa cctgggaatc cgacgctggg tctttaaaat
     2221 gaacatggaa tttggaggaa atgggacagc attttgcgac atcccttccc atctacagtg
     2281 ctacaaatgg gtggtgaagg agagtaacag attcggccct gaggactgga agaagaagtg
     2341 ggcacaagag tcagctctga tgaagatctc cgaggagctg gcgggcgttt tagcacagca
     2401 cgtacagcta gtcaatgaga aacagttccc gacatggaga aaattcctcc acatgtttct
     2461 cactcaaggt ggcatcattg aagcataccc acctgcagac agcatcacca acctcaccgt
     2521 agacatgttg atagagcctg acggagaagt cagagtgctg tcaatggggg accagtttca
     2581 tgctgatggc ccctttattt cttctggtac caccatgcct cagacttcag tggatcccca
     2641 agttctcaat tctttgtgcc tccgaattgg aaatatctgc aaagagaaag atgtggttgg
     2701 ttatttttct atagatctgg tgacttttat tgatccaagc accttagagc agcaggtatg
     2761 gacaacaggc ctcaacctct catacagtga ccagctagcc atgacgcagc tcaccctgta
     2821 cctgacaaat ggttatctga attgtagtct gagcaccctg gaagtgcccc gttttaaaga
     2881 agatgcagaa agggaaaaga aacgtctgag catccaggca gagctggccc cagaaaccag
     2941 tcgctatgca gtgatgtcca cacagctgaa gcacgacaat ctctcactca tcttctatta
     3001 tgtttttctc cagatgtgta aggcccatgg catcggctat gaccttgagg acagacaagg
     3061 aactgttttt atattatatg aatctctgaa gagatacaag ttgggcatga taacaatcgg
     3121 tgtggatctc cagggggccc tcatgacctt tgctcgcaat ctcttcatca tccatcaaga
     3181 aatatcagca cctgatatgc aaggcgagac caattttaag actaccattg atgatattga
     3241 aaccatttta ggagtaacag aagaaaataa aatgatattt gcaggagaaa aacggcgcaa
     3301 agaggaggaa gagagcctgt atgagcctgt tgagatatac acaaaaacag tatgactttg
     3361 gatacctgtc taaagcgaga aaaaagatct ctctaatcca tacgaggggc ctattgtcca
     3421 aacacttgac ggataggaag tgctacatgc ccgatagagt tgctcttaca tcgaagccag
     3481 agcaacataa ggtccaggag actcattagt tcactggcac agtcatgtcc tgagagtaaa
     3541 tgaaaccctc tgtctcctta tggctctcat ctgctctgga ctttaaaaga aaactgtctc
     3601 cgttttgttc agcacagcag tggatcattc acgtggccaa agccctcctc acaaaaccat
     3661 taaagccata gggaagttcc gagtgtggac tgtgattagc actcctgagc ctggagctgc
     3721 tggcaacagt aaaggagctc actctcctgt aggttttttt aaccacatga ttggtttctc
     3781 aaacaatact gcttgccttc tttgcataca tccttatttt acaacacaaa acacttgatt
     3841 ctaaactcag gccttttcag attcaggtcc accctacaga gatagaaaga aggctctctg
     3901 tccaaacacc tacagcttca aagtgacagg caaaaatatc tgtgggctaa aacaatcacg
     3961 tcaagtaatt gatggacgaa gacagaggac cagattaaat tagtgaaatg ctttaattac
     4021 agaacatttg caaggaagca taatctatta tcttccagta catatatgtt acaaagatat
     4081 tgtggagcta acaaactaaa ttcaatttga aaatgtgctt atttgtgtgt gtggtgtcta
     4141 aagtatccca aacactgtca aatgaggatg aactgctgaa tttttactgg cctgttagta
     4201 aaagtaaaat gtgtcatttt tctgctgaac agtagagcta attctgtatg agatatgatc
     4261 tactgtctaa tgctgaagat ctgcagtggc aaagcgtaca cagcacatag gagagcatta
     4321 tcggtatctt ctttgataca ctgcccatct cataccaata ggtcagacaa ccacgctgtc
     4381 cactgacatg cctcctgccc accagctact tctacttgct acttactgaa tacttagtag
     4441 gtctagatac aagccggact agaagctctt tagcttcttc ccagcaaacc catacagtta
     4501 ttactactgc cctcacctaa catacggggg ataaaagcaa gatttacgta agaatatttc
     4561 accccatgct ttagtaaagt gaaaataaat ttgagatttg ctccttttag ccatgaattt
     4621 tagcattttg tataaagtag aaagtttaag ttcacttgct ccacattaca caactggttt
     4681 gctttctttt ataccaaatt ctagtgtgat gcctaaaata taggaaaaca agttaattta
     4741 tgcacatctc ttgataataa aatcaacttg ctaaagcatt cctggggagg attggagcaa
     4801 gggcacaaag ggagggtata tgtggccaag atacattata tccattttaa aattttcaag
     4861 tgataaatat aaaattttaa tttatgtatt tatttattct gagataggat ctcactatgt
     4921 agcatttgtt gacctagaac tcattatgta gaccaggctg gcttcaaaat cacagatctg
     4981 tttctcagat cccaggtgct aggagtaaag gtatgtacca ccatgccaaa caaactttat
     5041 ttttaaataa aatcacttta tttaattatc ttacaaatga aaacattata cagctacatt
     5101 aaggaaacca tttaagcacc tgcccagtcc ccaactctac atctcaatga atttctctac
     5161 agtgagaatg actattctga agcaatggga ctttgtggta gtttgagtaa gaatggcctc
     5221 cacaggctca tggatttgaa tgcttggtca cccaggagtg gcactattaa ttaggaaatg
     5281 tgaccttgtt agaggaagta ggggtt
//
