LOCUS       XM_017595565            3499 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus IQ motif containing H (Iqch),
            transcript variant X5, mRNA.
ACCESSION   XM_017595565
VERSION     XM_017595565.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017595565.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017595565.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3499
                     /gene="Iqch"
                     /gene_synonym="RGD1310670"
                     /note="IQ motif containing H; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 3 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:300776"
                     /db_xref="RGD:1310670"
     CDS             98..3163
                     /gene="Iqch"
                     /gene_synonym="RGD1310670"
                     /codon_start=1
                     /product="IQ domain-containing protein H isoform X4"
                     /protein_id="XP_017451054.1"
                     /db_xref="GeneID:300776"
                     /db_xref="RGD:1310670"
                     /translation="MAQAQELNDPIGSILIQVHGDLHQLKEKLIQFSAEETRDPLDIQ
                     NLETAIQRTETGLKIHIERYLGIVNQEVIMTPVKSLDSPINSKWAIPTVIDQKSFIFP
                     MAPDKLWGLQKHRGSLPRGFTRAKPKVELNKKIMQDPENMHHRAAVNVSYGISLPRIK
                     QRKAHDKVRRVRKGSTISNLTVLPSSHRTDPHFIPIPVLQKDASKGILSMIERGLIPP
                     AARITFQNPPIKPQALPLHSFDEHRKVSITASFPIAHKPRLASEKVEESQQKQKAKVL
                     THLSTEEHSLPVTGKDKRSRGQPSRKSTRITTPSRIRRSPWDYILPVYNGSVDRAAPD
                     FIAFKTRYKLIWGSIFSFLEQIEKFLKDYAISEAKVRGKSLVSLLPEFELNNKLTKTD
                     VLAVLENPLHIQMLLNLPGQRFKGRDGRTEAAVKIQATWKSYKARTSFISYRQKKWAS
                     GVIALAWLLHCHKTRLKRIVEESRQRHLDNFRIRAKHLAANWSRIRTSRRTIIHIPSL
                     GYSQSVRKHISDLDIEQNRQLGRLCDILDVNVNVIYVCSSPMNDELKLYYKKLLSLQA
                     AVKSGYYGDRSDLQNRFRIITPEAVNIFTKHHMCLATHLMYSPKAIKRIKNLIQGEEA
                     YIVGGILHRDDLAVADMLNVPILASEPELVHLYSGKSGSKRIFDNANVPMPPGVYDIY
                     TYQQESALMKISEELAGVLAQHVQLVNEKQFPTWRKFLHMFLTQGGIIEAYPPADSIT
                     NLTVDMLIEPDGEVRVLSMGDQFHADGPFISSGTTMPQTSVDPQVLNSLCLRIGNICK
                     EKDVVGYFSIDLVTFIDPSTLEQQVWTTGLNLSYSDQLAMTQLTLYLTNGYLNCSLST
                     LEVPRFKEDAEREKKRLSIQAELAPETSRYAVMSTQLKHDNLSLIFYYVFLQMCKAHG
                     IGYDLEDRQGTVFILYESLKRYKLGMITIGVDLQGALMTFARNLFIIHQEISAPDMQG
                     ETNFKTTIDDIETILGVTEENKMIFAGEKRRKEEEESLYEPVEIYTKTV"
ORIGIN      
        1 cgcgcgccgc gttgctatag tgactggtgc ctgcttctag aagcgctccg gagaaggcca
       61 tacctccgga gccaagcgcc ttctgcctgc ctcagtcatg gctcaggccc aggagctcaa
      121 cgaccccatt ggatccatcc taatccaggt ccatggggac ctccatcagt taaaggagaa
      181 attaattcaa ttctcagctg aggagacaag agaccctcta gacattcaaa atcttgagac
      241 agcaattcaa agaactgaaa cggggttaaa gattcacatt gagaggtatc tcggaattgt
      301 aaaccaggag gtgataatga ctcctgtgaa gagcttagac tcccctatca attccaaatg
      361 ggcgattcca actgtaattg accagaaatc ctttattttt cccatggctc ccgataaact
      421 ttggggactt caaaaacatc gcggttcact tccacgcggc tttacaagag caaagccaaa
      481 agtagagttg aacaagaaga tcatgcagga ccctgagaac atgcaccaca gagctgctgt
      541 aaatgtgagc tatgggatca gtttgccacg tattaaacag aggaaagcac atgataaggt
      601 tcggcgggta agaaaagggt ccacgatctc caacctcaca gttctgccat ccagtcatcg
      661 cactgacccc cattttatcc ccatacctgt cttgcaaaag gatgccagta aagggatctt
      721 aagtatgatc gaacgagggc tgatcccccc agcagcaagg attacctttc agaatccacc
      781 cattaaaccc caagcacttc ctctgcatag ctttgatgag catcggaagg tatcaataac
      841 agcctccttt ccgatagctc ataagccacg cctggcttca gaaaaagtgg aggagtctca
      901 acagaaacag aaagccaagg tactcacaca tctaagcacg gaagaacaca gtctacctgt
      961 gacgggaaaa gacaaaaggt caagaggaca acccagtagg aagagcacga ggattactac
     1021 accgtctagg attaggagat caccatggga ttacatcttg cctgtttaca acggctctgt
     1081 agacagggca gccccagact ttatagcatt caaaacacgt tacaaattaa tctggggaag
     1141 cattttttct ttcctggaac aaattgagaa atttctcaag gactatgcaa tatcagaagc
     1201 caaagtaaga gggaagagtc tggtgtccct gcttccagag tttgagctga acaacaaact
     1261 taccaaaact gacgttctgg ctgtgctaga gaacccgctc cacatccaga tgctgctaaa
     1321 tcttcctgga cagaggttca agggccggga cggaaggaca gaggctgccg tcaagatcca
     1381 agccacatgg aaaagttata aggcaagaac ttccttcatt tcttatcgcc agaagaagtg
     1441 ggcctcggga gtgatcgccc tggcatggct tctacattgc cacaaaacaa gactaaagag
     1501 gatagtggag gaatctcgac agagacacct ggataacttc cgaattcgag ccaagcatct
     1561 ggcagccaac tggagtcgca tcaggacctc caggaggact attatccata taccatcatt
     1621 aggatattcc cagtctgtgc gaaaacacat atctgatttg gacatagagc agaacaggca
     1681 gttggggagg ctgtgtgaca tcctagatgt caacgtcaat gtcatctacg tctgctccag
     1741 tcccatgaat gacgagttaa agctgtacta caaaaaactc ctgagtctgc aagcagctgt
     1801 caaatcgggc tactatgggg ataggtctga cctgcaaaac aggttcagaa ttatcacccc
     1861 tgaagctgta aacatcttca ctaaacatca catgtgcctg gctactcacc tgatgtacag
     1921 tcccaaggca atcaaaagaa taaaaaatct catccaagga gaagaggcct acatcgtggg
     1981 cgggatcctc cacagagatg atttagctgt ggctgacatg ttgaatgtac ccatcctggc
     2041 ctcagagcct gagctggttc acctttacag tggcaagtct ggaagtaaac ggatctttga
     2101 taacgctaat gtgccaatgc ctcctggagt atatgacatc tatacttacc agcaggagtc
     2161 agctctgatg aagatctccg aggagctggc gggcgtttta gcacagcacg tacagctagt
     2221 caatgagaaa cagttcccga catggagaaa attcctccac atgtttctca ctcaaggtgg
     2281 catcattgaa gcatacccac ctgcagacag catcaccaac ctcaccgtag acatgttgat
     2341 agagcctgac ggagaagtca gagtgctgtc aatgggggac cagtttcatg ctgatggccc
     2401 ctttatttct tctggtacca ccatgcctca gacttcagtg gatccccaag ttctcaattc
     2461 tttgtgcctc cgaattggaa atatctgcaa agagaaagat gtggttggtt atttttctat
     2521 agatctggtg acttttattg atccaagcac cttagagcag caggtatgga caacaggcct
     2581 caacctctca tacagtgacc agctagccat gacgcagctc accctgtacc tgacaaatgg
     2641 ttatctgaat tgtagtctga gcaccctgga agtgccccgt tttaaagaag atgcagaaag
     2701 ggaaaagaaa cgtctgagca tccaggcaga gctggcccca gaaaccagtc gctatgcagt
     2761 gatgtccaca cagctgaagc acgacaatct ctcactcatc ttctattatg tttttctcca
     2821 gatgtgtaag gcccatggca tcggctatga ccttgaggac agacaaggaa ctgtttttat
     2881 attatatgaa tctctgaaga gatacaagtt gggcatgata acaatcggtg tggatctcca
     2941 gggggccctc atgacctttg ctcgcaatct cttcatcatc catcaagaaa tatcagcacc
     3001 tgatatgcaa ggcgagacca attttaagac taccattgat gatattgaaa ccattttagg
     3061 agtaacagaa gaaaataaaa tgatatttgc aggagaaaaa cggcgcaaag aggaggaaga
     3121 gagcctgtat gagcctgttg agatatacac aaaaacagta tgactttgga tacctgtcta
     3181 aagcgagaaa aaaggtttgc tttgtaatta atgtaaaagt gaggaagtta gtttgctttg
     3241 tttgccaaga gataaatcag aacaaattgt aacataatag tctttaaaat ctttgcttat
     3301 tttccagtgt tattttactc attaaggtta aacctaccgg tgttttcatt gtgagtgcta
     3361 agaatccctt cctcctcccc aaaacaaaga agccagagga aggctttggc ccactactgc
     3421 tccacttctt ttctcctgct tccaaaagcc acttagggtc ttcatttaaa ataccaaata
     3481 aaccagagtg atcacttgt
//
