LOCUS       XM_017595563            3607 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus IQ motif containing H (Iqch),
            transcript variant X3, mRNA.
ACCESSION   XM_017595563
VERSION     XM_017595563.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017595563.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017595563.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3607
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3607
                     /gene="Iqch"
                     /gene_synonym="RGD1310670"
                     /note="IQ motif containing H; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 3 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:300776"
                     /db_xref="RGD:1310670"
     CDS             98..3271
                     /gene="Iqch"
                     /gene_synonym="RGD1310670"
                     /codon_start=1
                     /product="IQ domain-containing protein H isoform X2"
                     /protein_id="XP_017451052.1"
                     /db_xref="GeneID:300776"
                     /db_xref="RGD:1310670"
                     /translation="MAQAQELNDPIGSILIQVHGDLHQLKEKLIQFSAEETRDPLDIQ
                     NLETAIQRTETGLKIHIERYLGIVNQEVIMTPVKSLDSPINSKWAIPTVIDQKSFIFP
                     MAPDKLWGLQKHRGSLPRGFTRAKPKVELNKKIMQDPENMHHRAAVNVSYGISLPRIK
                     QRKAHDKVRRVRKGSTISNLTVLPSSHRTDPHFIPIPVLQKDASKGILSMIERGLIPP
                     AARITFQNPPIKPQALPLHSFDEHRKVSITASFPIAHKPRLASEKVEESQQKQKAKVL
                     THLSTEEHSLPVTGKDKRSRGQPSRKSTRITTPSRIRRSPWDYILPVYNGSVDRAAPD
                     FIAFKTRYKLIWGSIFSFLEQIEKFLKDYAISEAKVRGKSLVSLLPEFELNNKLTKTD
                     VLAVLENPLHIQMLLNLPGQRFKGRDGRTEAAVKIQATWKSYKARTSFISYRQKKWAS
                     GVIALAWLLHCHKTRLKRIVEESRQRHLDNFRIRAKHLAANWSRIRTSRRTIIHIPSL
                     DVNVNVIYVCSSPMNDELKLYYKKLLSLQAAVKSGYYGDRSDLQNRFRIITPEAVNIF
                     TKHHMCLATHLMYSPKAIKRIKNLIQGEEAYIVGGILHRDDLAVADMLNVPILASEPE
                     LVHLYSGKSGSKRIFDNANVPMPPGVYDIYTYQQLIEQLSQLVTDNLGIRRWVFKMNM
                     EFGGNGTAFCDIPSHLQCYKWVVKESNRFGPEDWKKKWAQESALMKISEELAGVLAQH
                     VQLVNEKQFPTWRKFLHMFLTQGGIIEAYPPADSITNLTVDMLIEPDGEVRVLSMGDQ
                     FHADGPFISSGTTMPQTSVDPQVLNSLCLRIGNICKEKDVVGYFSIDLVTFIDPSTLE
                     QQVWTTGLNLSYSDQLAMTQLTLYLTNGYLNCSLSTLEVPRFKEDAEREKKRLSIQAE
                     LAPETSRYAVMSTQLKHDNLSLIFYYVFLQMCKAHGIGYDLEDRQGTVFILYESLKRY
                     KLGMITIGVDLQGALMTFARNLFIIHQEISAPDMQGETNFKTTIDDIETILGVTEENK
                     MIFAGEKRRKEEEESLYEPVEIYTKTV"
ORIGIN      
        1 cgcgcgccgc gttgctatag tgactggtgc ctgcttctag aagcgctccg gagaaggcca
       61 tacctccgga gccaagcgcc ttctgcctgc ctcagtcatg gctcaggccc aggagctcaa
      121 cgaccccatt ggatccatcc taatccaggt ccatggggac ctccatcagt taaaggagaa
      181 attaattcaa ttctcagctg aggagacaag agaccctcta gacattcaaa atcttgagac
      241 agcaattcaa agaactgaaa cggggttaaa gattcacatt gagaggtatc tcggaattgt
      301 aaaccaggag gtgataatga ctcctgtgaa gagcttagac tcccctatca attccaaatg
      361 ggcgattcca actgtaattg accagaaatc ctttattttt cccatggctc ccgataaact
      421 ttggggactt caaaaacatc gcggttcact tccacgcggc tttacaagag caaagccaaa
      481 agtagagttg aacaagaaga tcatgcagga ccctgagaac atgcaccaca gagctgctgt
      541 aaatgtgagc tatgggatca gtttgccacg tattaaacag aggaaagcac atgataaggt
      601 tcggcgggta agaaaagggt ccacgatctc caacctcaca gttctgccat ccagtcatcg
      661 cactgacccc cattttatcc ccatacctgt cttgcaaaag gatgccagta aagggatctt
      721 aagtatgatc gaacgagggc tgatcccccc agcagcaagg attacctttc agaatccacc
      781 cattaaaccc caagcacttc ctctgcatag ctttgatgag catcggaagg tatcaataac
      841 agcctccttt ccgatagctc ataagccacg cctggcttca gaaaaagtgg aggagtctca
      901 acagaaacag aaagccaagg tactcacaca tctaagcacg gaagaacaca gtctacctgt
      961 gacgggaaaa gacaaaaggt caagaggaca acccagtagg aagagcacga ggattactac
     1021 accgtctagg attaggagat caccatggga ttacatcttg cctgtttaca acggctctgt
     1081 agacagggca gccccagact ttatagcatt caaaacacgt tacaaattaa tctggggaag
     1141 cattttttct ttcctggaac aaattgagaa atttctcaag gactatgcaa tatcagaagc
     1201 caaagtaaga gggaagagtc tggtgtccct gcttccagag tttgagctga acaacaaact
     1261 taccaaaact gacgttctgg ctgtgctaga gaacccgctc cacatccaga tgctgctaaa
     1321 tcttcctgga cagaggttca agggccggga cggaaggaca gaggctgccg tcaagatcca
     1381 agccacatgg aaaagttata aggcaagaac ttccttcatt tcttatcgcc agaagaagtg
     1441 ggcctcggga gtgatcgccc tggcatggct tctacattgc cacaaaacaa gactaaagag
     1501 gatagtggag gaatctcgac agagacacct ggataacttc cgaattcgag ccaagcatct
     1561 ggcagccaac tggagtcgca tcaggacctc caggaggact attatccata taccatcatt
     1621 agatgtcaac gtcaatgtca tctacgtctg ctccagtccc atgaatgacg agttaaagct
     1681 gtactacaaa aaactcctga gtctgcaagc agctgtcaaa tcgggctact atggggatag
     1741 gtctgacctg caaaacaggt tcagaattat cacccctgaa gctgtaaaca tcttcactaa
     1801 acatcacatg tgcctggcta ctcacctgat gtacagtccc aaggcaatca aaagaataaa
     1861 aaatctcatc caaggagaag aggcctacat cgtgggcggg atcctccaca gagatgattt
     1921 agctgtggct gacatgttga atgtacccat cctggcctca gagcctgagc tggttcacct
     1981 ttacagtggc aagtctggaa gtaaacggat ctttgataac gctaatgtgc caatgcctcc
     2041 tggagtatat gacatctata cttaccagca gctgatagaa caattgagtc agttggtgac
     2101 tgataacctg ggaatccgac gctgggtctt taaaatgaac atggaatttg gaggaaatgg
     2161 gacagcattt tgcgacatcc cttcccatct acagtgctac aaatgggtgg tgaaggagag
     2221 taacagattc ggccctgagg actggaagaa gaagtgggca caagagtcag ctctgatgaa
     2281 gatctccgag gagctggcgg gcgttttagc acagcacgta cagctagtca atgagaaaca
     2341 gttcccgaca tggagaaaat tcctccacat gtttctcact caaggtggca tcattgaagc
     2401 atacccacct gcagacagca tcaccaacct caccgtagac atgttgatag agcctgacgg
     2461 agaagtcaga gtgctgtcaa tgggggacca gtttcatgct gatggcccct ttatttcttc
     2521 tggtaccacc atgcctcaga cttcagtgga tccccaagtt ctcaattctt tgtgcctccg
     2581 aattggaaat atctgcaaag agaaagatgt ggttggttat ttttctatag atctggtgac
     2641 ttttattgat ccaagcacct tagagcagca ggtatggaca acaggcctca acctctcata
     2701 cagtgaccag ctagccatga cgcagctcac cctgtacctg acaaatggtt atctgaattg
     2761 tagtctgagc accctggaag tgccccgttt taaagaagat gcagaaaggg aaaagaaacg
     2821 tctgagcatc caggcagagc tggccccaga aaccagtcgc tatgcagtga tgtccacaca
     2881 gctgaagcac gacaatctct cactcatctt ctattatgtt tttctccaga tgtgtaaggc
     2941 ccatggcatc ggctatgacc ttgaggacag acaaggaact gtttttatat tatatgaatc
     3001 tctgaagaga tacaagttgg gcatgataac aatcggtgtg gatctccagg gggccctcat
     3061 gacctttgct cgcaatctct tcatcatcca tcaagaaata tcagcacctg atatgcaagg
     3121 cgagaccaat tttaagacta ccattgatga tattgaaacc attttaggag taacagaaga
     3181 aaataaaatg atatttgcag gagaaaaacg gcgcaaagag gaggaagaga gcctgtatga
     3241 gcctgttgag atatacacaa aaacagtatg actttggata cctgtctaaa gcgagaaaaa
     3301 aggtttgctt tgtaattaat gtaaaagtga ggaagttagt ttgctttgtt tgccaagaga
     3361 taaatcagaa caaattgtaa cataatagtc tttaaaatct ttgcttattt tccagtgtta
     3421 ttttactcat taaggttaaa cctaccggtg ttttcattgt gagtgctaag aatcccttcc
     3481 tcctccccaa aacaaagaag ccagaggaag gctttggccc actactgctc cacttctttt
     3541 ctcctgcttc caaaagccac ttagggtctt catttaaaat accaaataaa ccagagtgat
     3601 cacttgt
//
