LOCUS       XM_039089961            2623 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus IQ motif containing E (Iqce),
            transcript variant X10, mRNA.
ACCESSION   XM_039089961
VERSION     XM_039089961.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089961.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2623
                     /gene="Iqce"
                     /note="IQ motif containing E; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 17 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:304318"
                     /db_xref="RGD:1311349"
     CDS             325..2370
                     /gene="Iqce"
                     /codon_start=1
                     /product="IQ domain-containing protein E isoform X10"
                     /protein_id="XP_038945889.1"
                     /db_xref="GeneID:304318"
                     /db_xref="RGD:1311349"
                     /translation="MSLGTTDLTSETGDDSLSAISFDSDVESKTKRKPLHKPPSTSPK
                     SPYYSKPKKVTSWRSLKTAGSMPLSSRMSLTPQKLWLGTSKQGSVTQPLSSLLTTEHT
                     WTHPPSCTPGYLTEAVRAKRADLRRSSSHGHVSGTSVYREKEDMYDEIIELKKSLHMQ
                     KSDVDLMRTKLRRLEEENSRKDRQIEQLLDPGRGPDFVRTLAEKKPDTGWVITGLKQR
                     IFRLEQQCKEKDSTINKLQTDMKTTNLEEMRIAMETYYEEIHRLQTLLASSEATGKKP
                     ILEKKMGVKRQKKMSSALLNLTRSVQELTEENQSLKEDLDRMLSNSPTVSKIKGYVDW
                     SKPRLLRRIAELEKKVSSSESPKNSASELVKPNPVVPSPSNISVQKQLKGDQSKEDQP
                     KVDPSEDQEHLQGTVKTLREELSALQEQLLGKDLEMKQMLQSKIDLEKELETAREGEK
                     ESQEREQALREEVEALTKKCQELEEAKRQETQERQDSFIAMTHEAHPEVHAPSPCSRH
                     SEPDSDNNADNNAGEDGGSQPPALCSEERREAAIRTLQAQWKAHRCKKRKAALDEVSQ
                     AATVLQAAFRGHLARSKLVPNKAPDSRSPSLPGLPSPLNQSSPSPPVPSPISPAEDSL
                     TQEESIIVIQSILRGYLAQARVIANCCQEKTGPSQREAVSVTPSESASPPSLEASPA"
ORIGIN      
        1 ggatctgaga gcacggctgg ctccgacata gaaagtcagc cttgcctgcg ggaggccata
       61 ggttcaattc gtgcacccgg cgagaccaaa aacagccaca agagacaagg tgcgattgcg
      121 cagtgcaacc ccgggagagt gcatggttgg cccctcgctc gtgcacacac tgcgcgtgca
      181 caggattcgc cgggcatcgg aggaaggacc acatccgggg ccctgtggcc gcggcacggt
      241 tgccatggta ccaggttggc tggcaggcct cccaagctga gggccgagct cgcaggaccg
      301 ccgaggccgc gcagcgccgc cgctatgagc ctgggcacca cagatctgac ctcggagacg
      361 ggagatgaca gtctgtctgc tatttccttt gattctgacg tggaatcgaa aacaaaaaga
      421 aaacctttgc acaaacctcc ttccacatca ccaaagtcac cttactactc caagcccaaa
      481 aaagtgactt cctggagatc tctgaagaca gcagggagca tgcctctgag tagcagaatg
      541 tccttgaccc cacagaagct atggctggga acctcgaaac agggcagtgt gacccaaccc
      601 ctgagctccc tgcttaccac ggagcacacg tggacccacc cccccagctg cactcccggc
      661 tacctgacag aagctgtgag agcgaagagg gcagacctca ggcgttccag cagccatggt
      721 cacgtctctg ggacttctgt ctacagagag aaagaggaca tgtacgatga gatcatcgag
      781 ttgaagaagt ccttacacat gcagaaaagt gatgtagatc tgatgagaac aaagcttcgg
      841 cgcttggaag aggagaacag cagaaaggat cggcagatag aacagcttct ggatccaggt
      901 cgaggcccag acttcgtgcg aaccttggca gagaagaagc ctgacactgg ctgggtcatt
      961 actgggctca agcagaggat cttcaggctg gagcagcagt gcaaggagaa ggacagcact
     1021 atcaacaaac tgcagacgga catgaagacc accaacctgg aagagatgcg catcgccatg
     1081 gaaacatact atgaagagat ccatcgtctg cagaccctcc tggcaagttc agaagccaca
     1141 ggaaagaagc ccatactgga gaagaagatg ggtgtgaaga ggcagaagaa gatgagtagc
     1201 gccctgctga acttaaccag gagcgtgcag gagctgacag aggagaacca gagtctgaag
     1261 gaggacctgg accgcatgct gagcaattcc cccacggtct ccaaaataaa gggttacgtg
     1321 gactggagca agccccggct gctgagacga attgcagagc tagaaaagaa agtgagttcc
     1381 tcagaaagcc cgaagaactc tgcttcagag ctggtcaagc cgaatcccgt ggtcccctcc
     1441 ccatccaaca tctcagtgca aaagcagctg aaaggggacc agtccaaaga ggaccagccc
     1501 aaagtggatc cgtctgagga ccaagaacat ctccagggaa ccgtgaagac cctgagggag
     1561 gagctgagcg cactgcagga gcagctgctg gggaaggacc tggagatgaa gcagatgcta
     1621 cagtccaaga tcgacctgga gaaggagctg gagacggcca gggaaggcga gaaggagagc
     1681 caggagcggg agcaggcttt gagggaggaa gttgaagcac ttaccaaaaa gtgtcaagaa
     1741 ctggaagaag ctaagagaca agagacacag gagagacaag actccttcat agcaatgact
     1801 catgaggctc acccagaggt ccacgcaccc tcaccctgca gcaggcactc cgagccagac
     1861 tccgacaaca atgctgacaa caatgctggt gaggacggtg gctcccaacc ccctgccctg
     1921 tgctcagagg agaggagaga ggctgcaatc aggaccctgc aggcccagtg gaaagcccac
     1981 aggtgcaaga aaagaaaagc agctttggat gaggtaagcc aggcagcgac tgtgctccag
     2041 gcggccttca ggggacacct agctcgttcg aagcttgtgc ccaacaaagc cccagactcc
     2101 aggtctccca gcctgccggg ccttcccagc cctcttaacc agagctctcc ttcaccccct
     2161 gtcccaagcc cgatctcccc ggctgaagac agcctaacac aagaggagtc catcattgtc
     2221 atccagtcca tcctccgtgg atacctggcc caggccaggg tcattgccaa ctgctgccaa
     2281 gagaaaaccg ggccctctca gagggaagca gtttcagtga caccttcaga atctgcctcc
     2341 ccaccctccc tcgaagcttc tcctgcgtga gctgcctcga cctacgttca tcccttatgg
     2401 aggagactga gactcactct cctccagtcc tcctgggacc acagctgggg gtcgaggcgg
     2461 ttggtggcgt ggcatgggtc ctgtgtctgc gtgtccctgt gaagctgtgc agtcgaaggt
     2521 tacccggctc cttgggccag gcttctcctg attgctcgtt tagggaaaca ctgcttttat
     2581 tccttttcta ctccattaaa gcccaaagct gtttgaaaat cca
//
