LOCUS       XM_039089960            2352 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus IQ motif containing E (Iqce),
            transcript variant X7, mRNA.
ACCESSION   XM_039089960
VERSION     XM_039089960.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089960.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2352
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2352
                     /gene="Iqce"
                     /note="IQ motif containing E; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 1 Protein, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 119 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:304318"
                     /db_xref="RGD:1311349"
     CDS             43..2352
                     /gene="Iqce"
                     /codon_start=1
                     /product="IQ domain-containing protein E isoform X7"
                     /protein_id="XP_038945888.1"
                     /db_xref="GeneID:304318"
                     /db_xref="RGD:1311349"
                     /translation="MSLGTTDLTSETGDDSLSAISFDSDVESKTKRKPLHKPPSTSPK
                     SPYYSKPKKVTSWRSLKTAGSMPLSSRMSLTPQKLWLGTSKQGHVSGTSVYREKEDMY
                     DEIIELKKSLHMQKSDVDLMRTKLRRLEEENSRKDRQIEQLLDPGRGPDFVRTLAEKK
                     PDTGWVITGLKQRIFRLEQQCKEKDSTINKLQTDMKTTNLEEMRIAMETYYEEIHRLQ
                     TLLASSEATGKKPILEKKMGVKRQKKMSSALLNLTRSVQELTEENQSLKEDLDRMLSN
                     SPTVSKIKGYVDWSKPRLLRRIAELEKKVSSSESPKNSASELVKPNPVVPSPSNISVQ
                     KQLKGDQSKEDQPKVDPSEDQEHLQGTVKTLREELSALQEQLLGKDLEMKQMLQSKID
                     LEKELETAREGEKESQEREQALREEVEALTKKCQELEEAKRQETQERQDSFIAMTHEA
                     HPEVHAPSPCSRHSEPDSDNNADNNAGEDGGSQPPALCSEERREAAIRTLQAQWKAHR
                     CKKRKAALDEAATVLQAAFRGHLARSKLVPNKAPDSRSPSLPGLPSPLNQSSPSPPVP
                     SPISPAEDSLTQEESIIVIQSILRGYLAQARVIANCCQEKTGPSQREAVSVTPSESAS
                     PPSLEASPGKDSEESGGEVAEDEDEAEEPPDPQPYSGALSMGLHAEEELRETAASEPA
                     PSVPDSARGGQGDCPSSSSLEAVPCGKDAMCEERSSSTGSARPSLAEPSPPGLQPLSP
                     PPVEDICSDDSDDIIFSPFLPRKKSPSPF"
ORIGIN      
        1 gccgagctcg caggaccgcc gaggccgcgc agcgccgccg ctatgagcct gggcaccaca
       61 gatctgacct cggagacggg agatgacagt ctgtctgcta tttcctttga ttctgacgtg
      121 gaatcgaaaa caaaaagaaa acctttgcac aaacctcctt ccacatcacc aaagtcacct
      181 tactactcca agcccaaaaa agtgacttcc tggagatctc tgaagacagc agggagcatg
      241 cctctgagta gcagaatgtc cttgacccca cagaagctat ggctgggaac ctcgaaacag
      301 ggtcacgtct ctgggacttc tgtctacaga gagaaagagg acatgtacga tgagatcatc
      361 gagttgaaga agtccttaca catgcagaaa agtgatgtag atctgatgag aacaaagctt
      421 cggcgcttgg aagaggagaa cagcagaaag gatcggcaga tagaacagct tctggatcca
      481 ggtcgaggcc cagacttcgt gcgaaccttg gcagagaaga agcctgacac tggctgggtc
      541 attactgggc tcaagcagag gatcttcagg ctggagcagc agtgcaagga gaaggacagc
      601 actatcaaca aactgcagac ggacatgaag accaccaacc tggaagagat gcgcatcgcc
      661 atggaaacat actatgaaga gatccatcgt ctgcagaccc tcctggcaag ttcagaagcc
      721 acaggaaaga agcccatact ggagaagaag atgggtgtga agaggcagaa gaagatgagt
      781 agcgccctgc tgaacttaac caggagcgtg caggagctga cagaggagaa ccagagtctg
      841 aaggaggacc tggaccgcat gctgagcaat tcccccacgg tctccaaaat aaagggttac
      901 gtggactgga gcaagccccg gctgctgaga cgaattgcag agctagaaaa gaaagtgagt
      961 tcctcagaaa gcccgaagaa ctctgcttca gagctggtca agccgaatcc cgtggtcccc
     1021 tccccatcca acatctcagt gcaaaagcag ctgaaagggg accagtccaa agaggaccag
     1081 cccaaagtgg atccgtctga ggaccaagaa catctccagg gaaccgtgaa gaccctgagg
     1141 gaggagctga gcgcactgca ggagcagctg ctggggaagg acctggagat gaagcagatg
     1201 ctacagtcca agatcgacct ggagaaggag ctggagacgg ccagggaagg cgagaaggag
     1261 agccaggagc gggagcaggc tttgagggag gaagttgaag cacttaccaa aaagtgtcaa
     1321 gaactggaag aagctaagag acaagagaca caggagagac aagactcctt catagcaatg
     1381 actcatgagg ctcacccaga ggtccacgca ccctcaccct gcagcaggca ctccgagcca
     1441 gactccgaca acaatgctga caacaatgct ggtgaggacg gtggctccca accccctgcc
     1501 ctgtgctcag aggagaggag agaggctgca atcaggaccc tgcaggccca gtggaaagcc
     1561 cacaggtgca agaaaagaaa agcagctttg gatgaggcag cgactgtgct ccaggcggcc
     1621 ttcaggggac acctagctcg ttcgaagctt gtgcccaaca aagccccaga ctccaggtct
     1681 cccagcctgc cgggccttcc cagccctctt aaccagagct ctccttcacc ccctgtccca
     1741 agcccgatct ccccggctga agacagccta acacaagagg agtccatcat tgtcatccag
     1801 tccatcctcc gtggatacct ggcccaggcc agggtcattg ccaactgctg ccaagagaaa
     1861 accgggccct ctcagaggga agcagtttca gtgacacctt cagaatctgc ctccccaccc
     1921 tccctcgaag cttctcctgg aaaggacagc gaggagagcg gtggggaggt tgctgaggac
     1981 gaagatgagg cagaggagcc gccagacccc cagccctact caggagcact aagcatgggg
     2041 ctccatgccg aggaggagct gagggagacc gctgcatctg aacctgcccc ctcggtcccc
     2101 gactccgccc gaggtggcca gggggactgc ccgtcctcat ccagtctgga ggctgtgccc
     2161 tgtgggaagg atgcgatgtg tgaggaaagg agcagcagca ccggaagtgc aaggccatcc
     2221 ctggctgagc cctctccccc aggactgcag cccttgtcac cgccacctgt ggaggacatc
     2281 tgctcggatg actcagatga cattatcttt tcaccatttc tgcccaggaa gaaaagcccc
     2341 tccccattct ag
//
