LOCUS       XM_017598488            4751 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus IQ motif containing E (Iqce),
            transcript variant X1, mRNA.
ACCESSION   XM_017598488
VERSION     XM_017598488.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017598488.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017598488.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4751
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4751
                     /gene="Iqce"
                     /note="IQ motif containing E; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 20
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 25 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:304318"
                     /db_xref="RGD:1311349"
     CDS             327..2795
                     /gene="Iqce"
                     /codon_start=1
                     /product="IQ domain-containing protein E isoform X1"
                     /protein_id="XP_017453977.1"
                     /db_xref="GeneID:304318"
                     /db_xref="RGD:1311349"
                     /translation="MSLGTTDLTSETGDDSLSAISFDSDVESKTKRKPLHKPPSTSPK
                     SPYYSKPKKVTSWRSLKTAGSMPLSSRMSLTPQKLWLGTSKQGSVTQPLSSLLTTEHT
                     WTHPPSCTPGYLTEAVRAKRADLRRSSSHGHVSGTSVYREKEDMYDEIIELKKSLHMQ
                     KSDVDLMRTKLRRLEEENSRKDRQIEQLLDPGRGPDFVRTLAEKKPDTGWVITGLKQR
                     IFRLEQQCKEKDSTINKLQTDMKTTNLEEMRIAMETYYEEIHRLQTLLASSEATGKKP
                     ILEKKMGVKRQKKMSSALLNLTRSVQELTEENQSLKEDLDRMLSNSPTVSKIKGYVDW
                     SKPRLLRRIAELEKKVSSSESPKNSASELVKPNPVVPSPSNISVQKQLKGDQSKEDQP
                     KVDPSEDQEHLQGTVKTLREELSALQEQLLGKDLEMKQMLQSKIDLEKELETAREGEK
                     ESQEREQALREEVEALTKKCQELEEAKRQETQERQDSFIAMTHEAHPEVHAPSPCSRH
                     SEPDSDNNADNNAGEDGGSQPPALCSEERREAAIRTLQAQWKAHRCKKRKAALDEVSQ
                     AATVLQAAFRGHLARSKLVPNKAPDSRSPSLPGLPSPLNQSSPSPPVPSPISPAEDSL
                     TQEESIIVIQSILRGYLAQARVIANCCQEKTGPSQREAVSVTPSESASPPSLEASPEW
                     CSSGKDSEESGGEVAEDEDEAEEPPDPQPYSGALSMGLHAEEELRETAASEPAPSVPD
                     SARGGQGDCPSSSSLEAVPCGKDAMCEERSSSTGSARPSLAEPSPPGLQPLSPPPVED
                     ICSDDSDDIIFSPFLPRKKSPSPF"
ORIGIN      
        1 ttggatctga gagcacggct ggctccgaca tagaaagtca gccttgcctg cgggaggcca
       61 taggttcaat tcgtgcaccc ggcgagacca aaaacagcca caagagacaa ggtgcgattg
      121 cgcagtgcaa ccccgggaga gtgcatggtt ggcccctcgc tcgtgcacac actgcgcgtg
      181 cacaggattc gccgggcatc ggaggaagga ccacatccgg ggccctgtgg ccgcggcacg
      241 gttgccatgg taccaggttg gctggcaggc ctcccaagct gagggccgag ctcgcaggac
      301 cgccgaggcc gcgcagcgcc gccgctatga gcctgggcac cacagatctg acctcggaga
      361 cgggagatga cagtctgtct gctatttcct ttgattctga cgtggaatcg aaaacaaaaa
      421 gaaaaccttt gcacaaacct ccttccacat caccaaagtc accttactac tccaagccca
      481 aaaaagtgac ttcctggaga tctctgaaga cagcagggag catgcctctg agtagcagaa
      541 tgtccttgac cccacagaag ctatggctgg gaacctcgaa acagggcagt gtgacccaac
      601 ccctgagctc cctgcttacc acggagcaca cgtggaccca cccccccagc tgcactcccg
      661 gctacctgac agaagctgtg agagcgaaga gggcagacct caggcgttcc agcagccatg
      721 gtcacgtctc tgggacttct gtctacagag agaaagagga catgtacgat gagatcatcg
      781 agttgaagaa gtccttacac atgcagaaaa gtgatgtaga tctgatgaga acaaagcttc
      841 ggcgcttgga agaggagaac agcagaaagg atcggcagat agaacagctt ctggatccag
      901 gtcgaggccc agacttcgtg cgaaccttgg cagagaagaa gcctgacact ggctgggtca
      961 ttactgggct caagcagagg atcttcaggc tggagcagca gtgcaaggag aaggacagca
     1021 ctatcaacaa actgcagacg gacatgaaga ccaccaacct ggaagagatg cgcatcgcca
     1081 tggaaacata ctatgaagag atccatcgtc tgcagaccct cctggcaagt tcagaagcca
     1141 caggaaagaa gcccatactg gagaagaaga tgggtgtgaa gaggcagaag aagatgagta
     1201 gcgccctgct gaacttaacc aggagcgtgc aggagctgac agaggagaac cagagtctga
     1261 aggaggacct ggaccgcatg ctgagcaatt cccccacggt ctccaaaata aagggttacg
     1321 tggactggag caagccccgg ctgctgagac gaattgcaga gctagaaaag aaagtgagtt
     1381 cctcagaaag cccgaagaac tctgcttcag agctggtcaa gccgaatccc gtggtcccct
     1441 ccccatccaa catctcagtg caaaagcagc tgaaagggga ccagtccaaa gaggaccagc
     1501 ccaaagtgga tccgtctgag gaccaagaac atctccaggg aaccgtgaag accctgaggg
     1561 aggagctgag cgcactgcag gagcagctgc tggggaagga cctggagatg aagcagatgc
     1621 tacagtccaa gatcgacctg gagaaggagc tggagacggc cagggaaggc gagaaggaga
     1681 gccaggagcg ggagcaggct ttgagggagg aagttgaagc acttaccaaa aagtgtcaag
     1741 aactggaaga agctaagaga caagagacac aggagagaca agactccttc atagcaatga
     1801 ctcatgaggc tcacccagag gtccacgcac cctcaccctg cagcaggcac tccgagccag
     1861 actccgacaa caatgctgac aacaatgctg gtgaggacgg tggctcccaa ccccctgccc
     1921 tgtgctcaga ggagaggaga gaggctgcaa tcaggaccct gcaggcccag tggaaagccc
     1981 acaggtgcaa gaaaagaaaa gcagctttgg atgaggtaag ccaggcagcg actgtgctcc
     2041 aggcggcctt caggggacac ctagctcgtt cgaagcttgt gcccaacaaa gccccagact
     2101 ccaggtctcc cagcctgccg ggccttccca gccctcttaa ccagagctct ccttcacccc
     2161 ctgtcccaag cccgatctcc ccggctgaag acagcctaac acaagaggag tccatcattg
     2221 tcatccagtc catcctccgt ggatacctgg cccaggccag ggtcattgcc aactgctgcc
     2281 aagagaaaac cgggccctct cagagggaag cagtttcagt gacaccttca gaatctgcct
     2341 ccccaccctc cctcgaagct tctcctgaat ggtgttcatc aggaaaggac agcgaggaga
     2401 gcggtgggga ggttgctgag gacgaagatg aggcagagga gccgccagac ccccagccct
     2461 actcaggagc actaagcatg gggctccatg ccgaggagga gctgagggag accgctgcat
     2521 ctgaacctgc cccctcggtc cccgactccg cccgaggtgg ccagggggac tgcccgtcct
     2581 catccagtct ggaggctgtg ccctgtggga aggatgcgat gtgtgaggaa aggagcagca
     2641 gcaccggaag tgcaaggcca tccctggctg agccctctcc cccaggactg cagcccttgt
     2701 caccgccacc tgtggaggac atctgctcgg atgactcaga tgacattatc ttttcaccat
     2761 ttctgcccag gaagaaaagc ccctccccat tctaggaccc caatcgttgc ctccaggtga
     2821 ggtggccgtg gggacaagtt agaggactct gaatttgaga agatgactat ctcgctaggg
     2881 aaagagccct gcctcaggaa cacctcagcc atcgattttc tcacgtgtca tgcctgtgcc
     2941 tttgagggac cctggtggct ctgtgttctc tggggacaga gggaaggagg gaggggggtc
     3001 cacctcccac ttccgtttct agtttcagcc catgtgtttc cagtgcccac agataacgtt
     3061 caccccaagt cagggcagca gggagtcctg caaagacagg aactcttgca aagtctacta
     3121 cttgccctta accttggcac tgccagctgc catgtaggcc tagccctcct ggtccactgc
     3181 tgcctggtgc cttaacaggt gctacagcta agtcttccgt gcccacatgg aatgcagtca
     3241 tacaagagcc agcaagaagc tgtggacatc agggtcccca actgagtccc tgtcccatgg
     3301 gctccttgtt cctcctgttc ttatccccca ccatctccac acaccccacc tcccccccag
     3361 gaggatgaac tctgggaaga gtcccaagca gcatcgacac agagttgagt gacacggctg
     3421 ctatggtaaa gcagccggag gatggcttag gtcacccaga cccaaggcag agagcagggc
     3481 caggaggcag cccgttgtcg tcccagagga cataggtctc agggaaggac aaattccagt
     3541 atggccctgt cagtgggtgt gcagaggtgc ctgtaggcca ccggtgccat ctggcccatt
     3601 cagcatccag cagcttgagg tgttggtccc ttgtctgtga aattagctcc tgtcagtggg
     3661 tgaggatgag gaactttggg cttgcacagg gttttaggag tatctaagct ccgtgcagct
     3721 taggcctgct gcccaggtgt cccctctaga gtgcctgtcg gactggctgc tgggggtctc
     3781 cacaggtcac tggagatgga acttcctggt cccatagact aactggcttt tgtctcagga
     3841 aaacctaatg ttataaggtt ccttcttgga tgaggccagt ggagacaccc aagaggtttg
     3901 cttttaggga ccatttaatt cctggcatct tcctcacaaa acacctgagc atgggacact
     3961 caggaatgag ctgggcttgg cggtcagagt ccaggaagag ggccccatgc tttgtctact
     4021 ggacagacct gctcctggaa ggtttaagtt cccctaatac tgtgatggga ccaggcacaa
     4081 ctgcctactc atttttctcc accagggggc aaaaaaaacc caactcagcc agacctggcc
     4141 atctcatttg gcctgtaggc tgcctgccaa gttagtttct cagtgaaatg atggtaactt
     4201 ttctcacatg gaagccggct ggagcactct gtagatctgc ttccttgtca gaacttggct
     4261 gtgttccctg tgattgatgc cactgcttga agctccatac cccacccacc aaggcacaag
     4321 acggtggcta caggtggtcc tcaagtgcct gtaccttccc cagggctggg agaggggagg
     4381 gcccacatac cactgctctg tccctccctt cttcaacggc agccatttgt gcattgagtg
     4441 ttctgagtga gcgagcagcc acgagtctgg ggtggggcga ctttgccttc acctgagggg
     4501 gtgcctcacc tcaggaaaag gggctatgca agatggcacc ccagctgcag ggcagggtct
     4561 atatatcttg gggccagcct gtacagtccg cctggccagt gggcagtaag gtctggtcag
     4621 ccgctgtact tgggttttct aagaactaca ggaaagctgt aaccctcccg gcctttggta
     4681 tagcagctaa tctattaaag gcaaacccta tcttgaagct gccccattaa atgggtgcct
     4741 gagcctctgc c
//
