LOCUS       NM_001402221            1848 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus IQ motif containing D (Iqcd), mRNA.
ACCESSION   NM_001402221 XR_358696
VERSION     NM_001402221.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1848)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Mar 14, 2022 this sequence version replaced NM_001402221.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.1319394.1,
                                           SRR26360190.1955264.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMEA5760434 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-36                JAXUCZ010000012.1  41632970-41633005   c
            37-844              JAXUCZ010000012.1  41622545-41623352   c
            845-1078            JAXUCZ010000012.1  41620759-41620992   c
            1079-1150           JAXUCZ010000012.1  41618795-41618866   c
            1151-1848           JAXUCZ010000012.1  41616107-41616804   c
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..1848
                     /gene="Iqcd"
                     /note="IQ motif containing D"
                     /db_xref="GeneID:498184"
                     /db_xref="RGD:1560757"
     exon            1..36
                     /gene="Iqcd"
                     /inference="alignment:Splign:2.1.0"
     exon            37..844
                     /gene="Iqcd"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..1498
                     /gene="Iqcd"
                     /note="IQ domain-containing protein D"
                     /codon_start=1
                     /product="dynein regulatory complex protein 10"
                     /protein_id="NP_001389150.1"
                     /db_xref="GeneID:498184"
                     /db_xref="RGD:1560757"
                     /translation="MALNLLSIPPSYHGLIIQRIPLKTGLVPAEPLKTLAPSKSKLNT
                     IEAKRIMSVLDEAINKVELITLMSYLESHPEALEDALPENFVEAIREHLDIGQALVEK
                     ASILQRKQKELEKGEEAEEDWDQERLLSIELHKTNLWPLTHQFRDSTKTILRLLINEP
                     QLTRLLHTQAPGRSPGAQCLLTSLVELRGFLFEKLLTSPMEVREKNQFIQDISRRSKR
                     NQEIIDALQAELAEVLKNKEAEVEKENFVIQELKNHLHQVFKFSENSLLRTKQEAEKQ
                     QKVDYRASQARQAKTQQDILALRAQYHNLVMENREAEQALRKKKYKVETEIENWIQKY
                     DMEMNEKQEEYEDLETIHKEEKLQLEELKERHAVLVEEFSQIRAESEINSKKRVEAER
                     EMVRMVRAATLIQAMWKGYLVRSMLRSRKKKRVKSKGKDKGKGKEKPKEEKGKEKKAK
                     GKGKGKK"
     exon            845..1078
                     /gene="Iqcd"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1150
                     /gene="Iqcd"
                     /inference="alignment:Splign:2.1.0"
     exon            1151..1848
                     /gene="Iqcd"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aactgtgggc agagaaactt gcagctcgtg gagcagagtt actggagatt gtgaaacgca
       61 agggagcctc aagcctgccg cctcagtgcc aggatataca gaggtaaagg cagctgcctc
      121 agagatggcc ttaaacctct taagcatacc cccatcctac cacggactga tcatccaaag
      181 aatccctctg aagacaggtc tcgtcccagc agagcccttg aagaccttag ccccatccaa
      241 atccaaactc aacaccattg aggccaagag gatcatgtcg gtcctggacg aggccataaa
      301 caaggtagag ctgataaccc tgatgtccta cctggagtcc cacccagagg ctctagagga
      361 cgcgttgccg gagaattttg tagaagccat aagagagcat ttggacattg gtcaggccct
      421 ggtggagaag gccagcatcc tgcagaggaa gcaaaaagag ctggagaaag gggaagaagc
      481 agaggaagac tgggaccagg aacgcctact gtccatcgag ttgcacaaga ctaacctgtg
      541 gccactgaca caccagttcc gagactccac caagaccatc ctgaggctcc tgatcaatga
      601 gccccagctc accaggctgc tgcacacgca ggcaccaggc agaagcccag gggcccagtg
      661 cctcctcacc agtctggtgg agctccgggg cttcctcttt gagaagctcc tcaccagtcc
      721 catggaagta agggagaaga accagttcat acaggacatt agccggagga gcaagaggaa
      781 ccaggagatc atcgatgccc tccaggctga gctggccgag gtgctgaaga acaaggaggc
      841 agaggtggag aaggagaact ttgtgatcca ggaactgaag aaccatctgc accaggtgtt
      901 caagttttcg gagaacagcc ttctccgcac gaagcaggag gcagagaagc agcagaaggt
      961 ggattaccgg gcctctcagg ccaggcaggc caagacgcag caagacatcc tggcgcttcg
     1021 cgcacagtac cacaacctgg tcatggagaa ccgggaggcg gagcaggcac taaggaagaa
     1081 aaaatacaaa gtggagacag aaattgagaa ctggatccag aaatatgaca tggagatgaa
     1141 cgagaagcag gaagaatacg aggacctgga gaccatccac aaggaggaga agctgcagct
     1201 ggaggagctg aaggagaggc atgcagtgct ggtggaagag ttctctcaga tccgcgccga
     1261 gagcgagatc aattccaaga agcgcgtaga ggcagagcgc gagatggtgc gcatggtgag
     1321 agccgccacg ctcatccagg ccatgtggaa gggctacctg gtgcgctcca tgctcaggtc
     1381 caggaagaag aagcgggtca agagcaaagg caaagacaag gggaagggca aggagaagcc
     1441 caaggaagag aagggcaagg agaaaaaagc caagggcaag ggtaaaggca agaagtgacc
     1501 gctgcctggt ctggccctgc ccctgccaag cttcaaccac accctaccct gtcacgacca
     1561 tacccccatt ctgccccacc ccttctatcc ctggctttaa tgatggctaa aattaaaaac
     1621 aaataacagg actggagaga tggctcagct gttaagagca ctgactgctc ttccagaggt
     1681 cctgagttca attcccagca accgtatgat ggctcacaac catctgtaat gggattcgat
     1741 gccctcttct ggtgtgtctg aagacagcga cagtgtattc acatatataa caaaaacctt
     1801 aaaaacatat aagtaataaa aaagcaataa aacccatttt aaaccata
//
