LOCUS       NM_001024317            2583 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus IQ motif containing with AAA domain 1 like
            (Iqca1l), mRNA.
ACCESSION   NM_001024317 XM_575324
VERSION     NM_001024317.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2583)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2583)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Dec 31, 2009 this sequence version replaced NM_001024317.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.21258.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-39                JAXUCZ010000004.1  11509121-11509159
            40-367              JAXUCZ010000004.1  11509749-11510076
            368-487             JAXUCZ010000004.1  11510868-11510987
            488-673             JAXUCZ010000004.1  11511798-11511983
            674-745             JAXUCZ010000004.1  11512539-11512610
            746-951             JAXUCZ010000004.1  11513879-11514084
            952-1036            JAXUCZ010000004.1  11514501-11514585
            1037-1162           JAXUCZ010000004.1  11514991-11515116
            1163-1238           JAXUCZ010000004.1  11515242-11515317
            1239-1345           JAXUCZ010000004.1  11515652-11515758
            1346-1429           JAXUCZ010000004.1  11516345-11516428
            1430-1488           JAXUCZ010000004.1  11516519-11516577
            1489-1571           JAXUCZ010000004.1  11517606-11517688
            1572-1679           JAXUCZ010000004.1  11517838-11517945
            1680-1879           JAXUCZ010000004.1  11518464-11518663
            1880-1966           JAXUCZ010000004.1  11518977-11519063
            1967-2144           JAXUCZ010000004.1  11519322-11519499
            2145-2389           JAXUCZ010000004.1  11519812-11520056
            2390-2583           JAXUCZ010000004.1  11520552-11520745
FEATURES             Location/Qualifiers
     source          1..2583
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q11"
     gene            1..2583
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /note="IQ motif containing with AAA domain 1 like"
                     /db_xref="GeneID:499971"
                     /db_xref="RGD:1564789"
     exon            1..39
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..2497
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /codon_start=1
                     /product="IQ and AAA domain-containing protein 1-like"
                     /protein_id="NP_001019488.2"
                     /db_xref="GeneID:499971"
                     /db_xref="RGD:1564789"
                     /translation="MSEGTYQRLWEASHATLEEVLEKEPSPLEPVLTRERQSFQYRIS
                     VLYLYYLGLLRRFNLAYDQMVQPQKRRLLRRLLDGVAGRVLELKDELVRVDLCETHCL
                     DRVLQELKLTPADLEVPIPKYFQLEQTSTMKARQQMLAEILARLEPLASQENLRGMSR
                     TEALIIVQCAERARQGRLRATFMREIRKEEERDRRIRENGRQKFSQDQGAIVIQKVWK
                     GYLQRKRIEQDRRMEMEFIGMLPSSSQTTRQNALAQAFVGEESRRTRQVEKEEEFQEA
                     IAKTHESLTETEGPDMKERMKDQIRQWFIECHALTGRFPDYPDEASGGSYLIFADKTP
                     EQVRQELEAQAQENKKKEQEKNKDKVKEKKEKKKKKTKEEKAKKDPEVMFKVLPSKSI
                     PVINAGHEEFTSIWKSRYDNKHPSQSFDSETLREEKRKQVEMEIRVQVDELMRQELRN
                     LRLAVDREETRPLKSPKKKGGKKSGKKKKEKDLTPDRSVDSLFEELVVIGLIKKSLLV
                     TLNDYIGDCLYLGSTLTLANKIPMPSLFDIRQNIALYGVLRLGSHDIHTMAPLVRSIL
                     LVGPSGMGKKMLVQAVCTETGANLFDLSPGNVMGKYPGKNGSQLLMHIVFKVARVFQP
                     SVIWIGNTEKTFYKKIPKEERRMDPKRIKKDLMRATRQLGPGDRVMLIGTTERPQLAE
                     MKGLCRFYERILFIPRPDYASRYVLWKRMIENQGIGVQQTQSLDISALARVSDGYTPG
                     HILQSIQSVLTERRLLQLTKKPLVASEFVVHLAKLDPVYREEEESLKEWFYKTPLGKK
                     NIKFTKDQQEAEEARLAKEKKKKK"
     exon            40..367
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            368..487
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            488..673
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            674..745
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            746..951
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            952..1036
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1037..1162
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1163..1238
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1239..1345
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1346..1429
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1430..1488
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1489..1571
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1572..1679
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1680..1879
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1880..1966
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1967..2144
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            2145..2389
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            2390..2583
                     /gene="Iqca1l"
                     /gene_synonym="Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acaaagggca tcgagaggtg aaggcaccat gtctgaggga acttaccaac gcctctggga
       61 ggcctcccac gcgactctgg aagaggtgct ggaaaaagag ccatctccgc ttgaacccgt
      121 gctcacccgg gagcggcaga gcttccagta caggatctcg gtgctttacc tgtactacct
      181 ggggctgctg cgccgcttca acctggccta cgaccagatg gtgcagccac agaagcgtag
      241 gttgctgcgg cgccttctgg acggtgtggc aggacgcgtg ctggagctta aggacgagct
      301 ggtgcgcgtc gacttgtgtg agacccactg cctggaccga gtgttgcagg aactcaagct
      361 aaccccggca gacttggagg ttcccatccc caagtatttt cagctggagc agaccagcac
      421 catgaaggcc cgtcagcaga tgctggccga gatcctggcc agactggagc cactggcttc
      481 tcaagagaat cttcgaggaa tgagccggac tgaggccctg attatagtgc aatgtgccga
      541 gagggctagg cagggccgac tacgagccac cttcatgcga gagattagga aagaggagga
      601 acgggaccgg aggattcgag agaatgggcg acagaaattc agtcaggacc agggagccat
      661 tgtcatacag aaggtgtgga aaggttacct acagagaaaa cgtattgagc aagatcgacg
      721 catggagatg gagttcattg gcatgctccc ctcgtccagc cagacaacga gacagaatgc
      781 ccttgcccag gccttcgtgg gggaggagtc acggaggacc cggcaggtgg aaaaggaaga
      841 ggaattccag gaagccatag cgaaaaccca cgagtctctc acggagaccg agggccctga
      901 catgaaggag aggatgaagg accagatacg acagtggttt attgaatgcc atgcccttac
      961 tggtcggttc cctgattatc cagacgaggc ttcaggtgga tcctacctga tcttcgcaga
     1021 caagactcca gagcaggtga gacaagaact ggaagcacag gcccaggaga ataaaaagaa
     1081 ggaacaagag aagaataagg acaaagtgaa ggaaaaaaag gaaaagaaga aaaagaaaac
     1141 caaggaagaa aaggccaaga aggacccaga agtgatgttc aaagtgctgc catccaaatc
     1201 tatccctgtg attaacgctg gtcacgagga attcacaagt atttggaaga gccgctatga
     1261 caacaaacac cccagccaga gctttgactc tgagaccctc cgggaggaga aaaggaagca
     1321 agtggagatg gagatccggg tgcaggtgga tgagctaatg agacaggaac tgaggaattt
     1381 gcgtctggct gtggacaggg aagagaccag acccctcaag tctccaaaga aaaaaggcgg
     1441 gaaaaagagt ggaaagaaga agaaggaaaa ggatctgacc ccagacaggt ctgtggactc
     1501 attgtttgaa gagcttgttg tcatcggcct tataaagaag tctctgcttg tgacactgaa
     1561 tgactacatt ggtgactgcc tctatctcgg gtccactctg accttggcaa acaagatacc
     1621 catgccttcc ctgtttgata tacggcagaa catagcactg tatggtgttc ttcggttggg
     1681 ctcccatgac atacatacca tggcacccct tgtccgctcc atcctcctgg tgggaccctc
     1741 tggcatgggg aagaagatgt tggtccaagc ggtgtgcaca gaaactggtg ccaacctgtt
     1801 tgacctgtca cctggcaacg tgatgggcaa atacccaggg aagaatggat cacagctatt
     1861 gatgcacatc gtctttaagg tggcccgggt cttccagccc tctgtcattt ggattggaaa
     1921 tactgagaaa accttctaca agaagatccc aaaggaagaa aggaggatgg acccaaagag
     1981 aataaagaaa gacctcatga gggccacgag acagctgggc cctggtgacc gagtgatgct
     2041 gataggaacc acggagcgcc cacagctggc cgagatgaag gggttgtgcc ggttctatga
     2101 gcgcatcctc ttcatacccc ggcctgatta cgcttctcgt tatgtgctct ggaaacggat
     2161 gatagagaac cagggaatag gggtacagca gacccagagt ctggacatta gtgccctggc
     2221 tagggtgtct gatggctaca cacctggtca cattctacaa tccatccagt cagtgctgac
     2281 agaacgccgg ctccttcaac tgaccaagaa gccactggtt gcctccgagt ttgtggtgca
     2341 cttggcaaag ctggatccag tatacaggga ggaggaggaa tccctaaagg aatggtttta
     2401 taagactccg ctgggaaaaa agaatataaa atttaccaag gaccaacagg aggctgagga
     2461 ggccagactg gcgaaggaga agaagaagaa aaagtgaagg tctttgctgt tgggtgtgat
     2521 gtggtgaggg gggggggtgc ctcgagagtg tgacagacac ataaaggccc agctggctcc
     2581 tga
//
