LOCUS       XM_017596905            3310 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus IQ motif containing with AAA domain 1
            (Iqca1), transcript variant X1, mRNA.
ACCESSION   XM_017596905
VERSION     XM_017596905.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017596905.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017596905.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3310
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3310
                     /gene="Iqca1"
                     /note="IQ motif containing with AAA domain 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 33 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:316616"
                     /db_xref="RGD:1305311"
     CDS             343..2853
                     /gene="Iqca1"
                     /codon_start=1
                     /product="dynein regulatory complex protein 11 isoform X1"
                     /protein_id="XP_017452394.2"
                     /db_xref="GeneID:316616"
                     /db_xref="RGD:1305311"
                     /translation="MSNLMYNNMWHQTQEALNSLLDKESQKMTEPQKNKVLVFQMLAT
                     FYIKYVQIFRNMENVYDQIVHPQKRMLIRKILDGVMGRILELKNEMVELEMTEFHYFD
                     DILQDMKLSPQQLDVPIPRYFLKERLEVIKGREKTLARILDECGLNLPDVKYAVKSIA
                     LEEAVKMIQIAERARQGRLRAMFMKQIFLQECRAREMKLLGHKLSDTTLAALQIQKVW
                     RGFYQCKKTVKEREEEMVFLGMKPPPLFNEVSDAIVQSEQVSNLRDELQLKHEQKYQE
                     ALVSIKEDLRLLEGADIKEHLQDQIRQWFIECRNLTGTFPEYPNEEEGGSAVIFSNKT
                     PEQVIEDIIAAQEEEEKSKKKKKKEEKENKGKKVKKEKERKTVTKEKAAKEEDEEWKM
                     SPSLFLQLMEEGNSLYKDMWMNKDESWNFPQDYDPELVKEEKRKELEMEIRVQVDELM
                     RQELKNLKLAVNREIEPQPRLKKGKKQNKGRKGRRGKRGKKDKDLTADRTIESLYQEL
                     VEEGLLIQALKVKLSDYIGEYSYLGTTLRQVAIEPMPSLLDVRQLITLYGILPLGSAE
                     VHERAPLVKSLLLAGPPGVGKKMLVHAICTETGANLFNLSSSNIAGKYPGKTGLQMMI
                     HLVFKVARQLQPSVVWIQDTEKTFYKKVPQAEKRNEPKRLKKYLPKLLKLLRPDDRIL
                     IVGTTHRPFDAELQSFCRVYQKIILVPRPDYASRYVLWKQIILRNGGEVTNALNISCL
                     SKVTDGFTQGQIVHVIKEVLTERRIRQQAHKPLTAIEFITMMTNMNPVYREEEESFKN
                     WYAKTPLGRKRVLSLTVGGGKEKEKDKGKKGKKGKKKK"
ORIGIN      
        1 acgcatgcag gaactgcgca gaagtagagt ccccgttgct agggccccct ggagccgctc
       61 tagtgggaga agtggggttc cagagccaga ggcagcaacc aaagcgaggg aaccccagtc
      121 tgtgcctgcg ctcccggagg gtggtggcag ggtgacccac cctgtcaagc cttacctacc
      181 cctaagagac aggctgtcct ccgtccctgt ccctccctcc agaggaaccc tcaacctccg
      241 aaaacctctg ggggtgttcc cccaacgttg gcagtcagcc agcctttaga ggccaaggaa
      301 aagctttcct gtgggtgaag gaaagacgga aagaggccag ccatgtcgaa cctaatgtac
      361 aataacatgt ggcaccagac ccaagaagcc ctcaattctc tgcttgacaa agagtctcag
      421 aagatgaccg aaccacaaaa aaacaaggtc ctagtctttc agatgttagc caccttctac
      481 ataaagtatg ttcagatctt caggaatatg gagaacgtct atgaccagat agtccatcca
      541 cagaaacgca tgctaatccg aaagatcctg gatggagtga tgggtcgcat cctggaactg
      601 aagaacgaga tggtggagct ggaaatgaca gagttccatt attttgatga tatcctacag
      661 gacatgaagc tgtctcctca acagttggat gtcccaatac ccaggtattt tctgaaggag
      721 aggctggagg tcataaaagg gagagagaag accctcgctc ggatcttgga cgaatgtgga
      781 ttgaacctcc ctgacgtgaa atacgccgta aagagcatag ccttggaaga ggctgttaaa
      841 atgatccaga tagccgagcg ggcaaggcag ggccgcctca gggcgatgtt catgaagcag
      901 atcttcctcc aggagtgcag agccagggag atgaagctgc tgggacacaa actctcagac
      961 accaccttgg cggcgctcca gattcagaaa gtttggcgag gtttctatca atgcaagaaa
     1021 acagtgaagg agcgggaaga agagatggta ttcctgggta tgaaaccacc ccctctcttc
     1081 aacgaagtca gtgatgccat cgtccagtca gaacaagtgt caaatctgcg ggacgagttg
     1141 cagctcaaac acgagcagaa gtaccaggaa gccttagtga gtatcaagga ggacctgcgg
     1201 ctgttggaag gcgcagatat caaggagcac ctgcaggacc agatccggca gtggttcata
     1261 gaatgcagga atctgacggg cacattccca gaatacccta atgaggaaga agggggctca
     1321 gctgtcatct tttccaacaa gaccccagag caggttatcg aggatatcat agccgcccaa
     1381 gaggaggaag aaaaatcaaa aaagaaaaag aagaaagaag aaaaggagaa taagggcaaa
     1441 aaagtcaaaa aggagaagga gaggaaaact gtcacgaaag agaaggctgc aaaggaagaa
     1501 gatgaggaat ggaagatgtc accaagtctt ttccttcaat tgatggagga aggaaatagc
     1561 ttatacaaag acatgtggat gaataaagat gaatcttgga atttccctca ggactatgac
     1621 ccagaattgg tcaaggagga aaaacggaag gaattagaga tggagataag ggttcaggtg
     1681 gacgagctga tgagacagga attgaaaaac cttaagctgg ctgtgaacag agagatagaa
     1741 ccccaacccc ggctaaagaa agggaaaaag caaaataaag ggagaaaagg ccggagaggg
     1801 aaacggggaa agaaggacaa agacctgacg gctgacagga ccatcgagtc cctgtaccag
     1861 gagctggttg aagaaggcct gctgatccaa gctctgaagg tcaaactctc cgactatatt
     1921 ggtgagtaca gctacctggg gacgactctg cgtcaggttg ccatagagcc catgccatcc
     1981 ctcctggacg tcagacagct catcaccctg tatggaatct tgcctctggg gtccgcagaa
     2041 gtacatgaga gagctccctt ggtgaagtcg ctgctattgg ccggaccccc aggggtaggg
     2101 aagaaaatgc tggtccatgc catctgcaca gaaacagggg ctaacctctt caacctgtct
     2161 agctcaaaca tcgccgggaa gtacccgggc aaaaccggcc tgcagatgat gatacacttg
     2221 gtcttcaagg tagctcgcca gcttcagccg tccgtggtgt ggatccagga cacagagaaa
     2281 accttctaca agaaagtccc gcaggccgag aaacggaatg aaccaaaacg cctaaaaaaa
     2341 tacctcccca aactcctgaa gctcctgaga ccagacgaca ggatcctgat tgtggggacc
     2401 acacaccggc ccttcgatgc cgagcttcag tccttctgca gagtttacca aaagatcatt
     2461 ttggttccca gacccgacta tgcctccaga tacgttctgt ggaaacaaat cattctacgc
     2521 aacggaggtg aggtcaccaa tgccctgaac atcagttgcc tgtctaaagt cactgacggc
     2581 tttacacaag gacagatcgt ccatgtgatc aaagaggtgc tcacggagcg cagaatccgg
     2641 cagcaggctc acaagccact cactgccatc gagtttatca ccatgatgac caacatgaac
     2701 cctgtgtaca gagaggagga agagagtttt aagaactggt atgccaaaac ccctctgggg
     2761 agaaagcgag tcttgtcact aacagttgga ggcggcaagg aaaaggaaaa ggacaaagga
     2821 aagaaaggaa agaagggcaa aaagaagaag taatgtcctc ctcagcagcc gcctcaagca
     2881 actttgagat ggtgtcggcc ccagcttgtc agggagaggc tcacccctgc ccacctgggg
     2941 aagcccaccg agaagctaag gtgcgagcag ccaccccaag tcactgtacc ctaactcctg
     3001 tgttccgtta tcctttagga ggctgcacac caagcgagat gtccttacag ccatatccac
     3061 agtttgccac tgttccttaa ctcatgccaa ttctgtctat atcacatttg ctttccgcac
     3121 cccgcactct ccccagctct cgcactcgtc agtattagtt agcaccaaga ttacaacgta
     3181 tagggaggtc tctcccgcgg tgagagtacc taattgtatt gttggtacac tagctcttta
     3241 gtaacccata tgcactgtat attttgttgc acatatttta ataaattatt tgctatagtc
     3301 atgaatatca
//
