LOCUS       NM_001106679            2223 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus intracisternal A particle-promoted polypeptide
            (Ipp), mRNA.
ACCESSION   NM_001106679 XM_001071097 XM_233415
VERSION     NM_001106679.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 12, 2008 this sequence version replaced NM_001106679.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.23298.1,
                                           SRR26643429.20451.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-292               JAXUCZ010000005.1  135202155-135202446
            293-724             JAXUCZ010000005.1  135206496-135206927
            725-880             JAXUCZ010000005.1  135210953-135211108
            881-1048            JAXUCZ010000005.1  135213914-135214081
            1049-1186           JAXUCZ010000005.1  135222679-135222816
            1187-1309           JAXUCZ010000005.1  135225740-135225862
            1310-1530           JAXUCZ010000005.1  135228326-135228546
            1531-2223           JAXUCZ010000005.1  135234935-135235627
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q35"
     gene            1..2223
                     /gene="Ipp"
                     /note="intracisternal A particle-promoted polypeptide"
                     /db_xref="GeneID:298439"
                     /db_xref="RGD:1306299"
     CDS             1..1755
                     /gene="Ipp"
                     /note="IAP promoted placental"
                     /codon_start=1
                     /product="actin-binding protein IPP"
                     /protein_id="NP_001100149.2"
                     /db_xref="GeneID:298439"
                     /db_xref="RGD:1306299"
                     /translation="MSKEEYAKAADSSFSSDKHAQLILAQMNKMRTGQHFCDVQLQVG
                     KETFQVHRLVLAASSPYFAALFTGGMKESSKDVVQILGVEAGIFQLLLDFIYTGLVNI
                     AVSNVQELIVAADMLQLTEVVNLCCDFLKGQIDPQNCIGLFQFSEQIACHDLLEFTEN
                     YIHVHFLEVHSGEEFLALTKDQLIRILRSEELSIEDEYQVFLAAMQWILKDLGKRRKH
                     VVEVLDPVRFPLLPSQRLLKYIEGVSDFNLRVALQTLLKEYCEVCKSPKENKFCSFLQ
                     TSKARPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQARC
                     GLGVAVLGGMVYAIGGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLGVCVCYGAI
                     YALGGWVGAEIGDTIERFDPDENKWEVVGNMAVSRYYFGCCEMQGLIYAVGGISNEGL
                     ELRSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYAIGGWNETQDALHTVEKYSF
                     EEEKWIEVASMKVPRAGMCVVAVNGLLYVSGGRSSSHDFLAPGTLDSVEVYNPHSDTW
                     TEIGNMITSRCEGGVAVL"
     exon            1..292
                     /gene="Ipp"
                     /inference="alignment:Splign:2.1.0"
     exon            293..724
                     /gene="Ipp"
                     /inference="alignment:Splign:2.1.0"
     exon            725..880
                     /gene="Ipp"
                     /inference="alignment:Splign:2.1.0"
     exon            881..1048
                     /gene="Ipp"
                     /inference="alignment:Splign:2.1.0"
     exon            1049..1186
                     /gene="Ipp"
                     /inference="alignment:Splign:2.1.0"
     exon            1187..1309
                     /gene="Ipp"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..1530
                     /gene="Ipp"
                     /inference="alignment:Splign:2.1.0"
     exon            1531..2223
                     /gene="Ipp"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtctaagg aggagtacgc caaggctgct gacagttcat tttcctctga taaacatgcc
       61 cagctcatct tggcccagat gaacaaaatg agaaccgggc agcatttctg cgatgtccag
      121 ctacaggtgg ggaaggaaac ctttcaggtt caccgtctgg tcctggccgc cagtagtcca
      181 tactttgcag ctttgttcac tggaggaatg aaagagtcct cgaaagacgt tgtacagatt
      241 ctaggagttg aagctggaat ctttcagtta cttctagatt tcatttatac agggttagtg
      301 aacatagctg tgagtaacgt ccaggagctg attgttgcag cagacatgct acagttgacc
      361 gaagttgtta atctttgctg tgattttctg aaaggacaaa ttgatcctca gaactgcatt
      421 ggactcttcc agttctctga gcaaattgcc tgccatgatc ttttggaatt tacagaaaat
      481 tatattcatg tccatttctt ggaggttcat agtggggaag agttcctggc acttacaaaa
      541 gatcaactga tcagaatttt acggagcgaa gaacttagca ttgaagacga ataccaagtc
      601 ttcttagctg caatgcagtg gattctgaaa gatctgggaa agagaaggaa acatgtggtg
      661 gaagtgttag atccagttcg attccctttg ttaccatctc agaggctttt aaagtacata
      721 gaaggagtat ctgattttaa tcttcgagtt gcactgcaaa cgcttttgaa agagtactgt
      781 gaggtctgca agtctcccaa agagaacaag ttttgtagtt ttctgcagac gtctaaagct
      841 cgacctcgga agaaagcaag aaaatatctg tatgcagtag gtggatacac gcggctgcag
      901 ggggggcgtt ggagtgacag cagagccctc agctgtgtag agcgtttcga tacctttagc
      961 cagtactgga ccactgtgtc ctcacttcat caggctcggt gcggtcttgg agttgcagtt
     1021 ttaggaggaa tggtctatgc tattggagga gaaaaggatt cgatgatctt tgactgtact
     1081 gagtgttatg atccagttac taaacaatgg acaactgttg cttcaatgaa tcacccccgc
     1141 tgtggattgg gagtgtgtgt gtgctacggg gcaatctatg ctttgggtgg gtgggttgga
     1201 gctgagattg gtgacaccat tgaacgattt gatcctgatg aaaataaatg ggaagttgtt
     1261 ggcaacatgg cagtgtcacg ctactacttt gggtgctgtg aaatgcaagg tttaatttat
     1321 gcagttggag gaatcagcaa tgagggacta gagctccgtt cctttgaggt ttatgatcca
     1381 ctttccaagc gctggtctcc acttcctcct atgggaacca gaagagcata tcttggggtg
     1441 gcagcactca atgactgcat ttatgctatt ggagggtgga atgagacaca agacgccctt
     1501 catactgtag aaaaatactc ctttgaagag gaaaagtgga ttgaagttgc ttcaatgaaa
     1561 gtgcctagag caggcatgtg tgttgtggca gtcaatggtc ttctgtatgt ttctggaggc
     1621 cgatcttcta gccatgattt cttggcccca ggtactttgg actcggttga agtttacaac
     1681 cctcattcag atacttggac tgaaattggt aatatgatca ctagtcgttg tgaagggggt
     1741 gttgctgtat tgtgacagcg aaggcacaga agcacaagga acattttgaa aatgtaggtt
     1801 ctgaccattt gcaaatgaaa catgtatttg taatatgatc ttctgattct tttgagtatt
     1861 ctatatattg aatagatgag taaagaatga ttttttttta atttgaatga gaatggatat
     1921 ggaacatatc ttaaattaat aaagtactct tacaattttt caaaacttag caacaataca
     1981 aacggtattt atgccttaca gttattcagt tctcaataga atcctaattg taagaattgt
     2041 ttgctagaat cttctagaca atagtgtgtt ttggttattc ctccagtgcc attcaagtgg
     2101 aaacatagcc tgtatatagt gtaaagatga gacagttaaa atttttctat aattcatgat
     2161 ttgatccaga acataatttc cctgatgtca cgtgacctac agagaagtca ccgaagctgt
     2221 ccc
//
