LOCUS       XM_039103497            4313 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus importin 11 (Ipo11), mRNA.
ACCESSION   XM_039103497
VERSION     XM_039103497.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 4 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-171               JACYVU010000065.1  30848029-30848199   c
            172-314             JACYVU010000065.1  30838422-30838564   c
            315-415             JACYVU010000065.1  30833031-30833131   c
            416-431             JACYVU010000065.1  30825638-30825653   c
            432-432             "N"                1-1
            433-487             JACYVU010000065.1  30825583-30825637   c
            488-632             JACYVU010000065.1  30825092-30825236   c
            633-692             JACYVU010000065.1  30825031-30825090   c
            693-806             JACYVU010000065.1  30812152-30812265   c
            807-825             JACYVU010000065.1  30812132-30812150   c
            826-884             JACYVU010000065.1  30810398-30810456   c
            885-933             JACYVU010000065.1  30808673-30808721   c
            934-1008            JACYVU010000065.1  30807273-30807347   c
            1009-1127           JACYVU010000065.1  30803849-30803967   c
            1128-1189           JACYVU010000065.1  30803786-30803847   c
            1190-1353           JACYVU010000065.1  30802519-30802682   c
            1354-1397           JACYVU010000065.1  30800183-30800226   c
            1398-1488           JACYVU010000065.1  30784402-30784492   c
            1489-1536           JACYVU010000065.1  30781453-30781500   c
            1537-1642           JACYVU010000065.1  30780526-30780631   c
            1643-1769           JACYVU010000065.1  30778231-30778357   c
            1770-1803           JACYVU010000065.1  30775940-30775973   c
            1804-1844           JACYVU010000065.1  30775260-30775300   c
            1845-1961           JACYVU010000065.1  30774529-30774645   c
            1962-2075           JACYVU010000065.1  30770759-30770872   c
            2076-2191           JACYVU010000065.1  30763429-30763544   c
            2192-2268           JACYVU010000065.1  30755056-30755132   c
            2269-2295           JACYVU010000065.1  30752357-30752383   c
            2296-2375           JACYVU010000065.1  30752088-30752167   c
            2376-2456           JACYVU010000065.1  30751594-30751674   c
            2457-2552           JACYVU010000065.1  30737242-30737337   c
            2553-2666           JACYVU010000065.1  30736350-30736463   c
            2667-2788           JACYVU010000065.1  30729545-30729666   c
            2789-2884           JACYVU010000065.1  30709072-30709167   c
            2885-2969           JACYVU010000065.1  30696004-30696088   c
            2970-4313           JACYVU010000065.1  30674958-30676301   c
FEATURES             Location/Qualifiers
     source          1..4313
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4313
                     /gene="Ipo11"
                     /note="importin 11; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: inserted 1 base in
                     1 codon; deleted 3 bases in 3 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 25 ESTs, 1 long SRA read, 2 Proteins, and 91%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:310056"
                     /db_xref="RGD:1311133"
     CDS             177..3134
                     /gene="Ipo11"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 3 bases in 3 codons; substituted 2 bases at 2
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:585..587,aa:OTHER)
                     /transl_except=(pos:672..674,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: importin-11"
                     /protein_id="XP_038959425.1"
                     /db_xref="GeneID:310056"
                     /db_xref="RGD:1311133"
                     /translation="MDLNSASSVVLQVLTQATSQDTAVLKPAEEQLKQWETRQVFYSV
                     LLNIFTNHTLDINVRWLAVLYFKHGIDRYWRRVAPHALSEEXKSTLRAGLITNFNEPI
                     NQIATLIAVLIAKVARLDCPRQWPELIPTLVESVXVQDDLRQHRALLTFYHVTKTLAS
                     KRLDCXQKAIYDLASGIYNFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVL
                     RKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRDRLEKTIILFTKV
                     VTLGLLDQPPISFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAY
                     KPSKFFPDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGF
                     TVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLI
                     KDAVYNAVGLAAFELFDSVDFDQWFKTQLLPELQVSHNRYKPLRRRVIWLIGQWISVK
                     FKSDLRPRLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLF
                     QLLQQVTECDTKMHVLHVLSCVIERVNIQIRPYVGCLVQYLPLLWKQSEEHNMLRCAI
                     LTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCV
                     TPELLRIFQNMSPLLELPSSCLANELSSENLRTCFKIINGYIFLSSTEFLQTYAAGLC
                     QSFYELLPEITTEGQVQVLKVVENTLKVNPVLGPQMFQRILPYVFRGVIEGERYPVVM
                     SIYLAVMGRVLLQNASFFSSLLNEMGHEFNQEMDQLLGNVIEMWVDRMDNITQPERKK
                     LSALALLSLLPSDNSVIQDKFCGIINISVEALHDVMTEDPETRTYKDCMLMSHHEEPK
                     VTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQEILGEQGFQSLMETVDT
                     EIVTQLQEFLQGF"
ORIGIN      
        1 tcgtcgtttg gagtggcgac gcggaagatg gcgcgttcct agaagccgtt ttcggcatca
       61 gtaggcggca ccgtgtggat taggagtgtg ggggcgcgga agtcaaccaa cgccgcttcg
      121 tgtgaacaag tggaaagggg cgggccggac ggttccggac cgaagcacga ggcttcatgg
      181 atctcaatag tgccagctct gtagttcttc aggtcttaac acaggccacc agtcaggata
      241 ctgctgtctt aaagccagcc gaggagcagt tgaaacagtg ggagacacgc caggttttct
      301 actcagtgtt gctgaatatt tttacgaatc acacccttga tataaatgta aggtggcttg
      361 ctgtactcta ttttaaacat gggattgatc gttactggag acgtgtagca cctcatgctc
      421 tctcagaaga angaaagtca acattgcgag caggactcat caccaacttt aatgaaccaa
      481 taaaccagat tgctaccctg attgcagtgc tgattgcgaa ggtggctcgg ttagactgcc
      541 ctaggcagtg gcccgagctc atccccactc tcgtagagtc tgtttaagtc caagatgatc
      601 ttcgacagca cagagctttg cttaccttct accatgttac caagacactg gcgtccaaac
      661 gcctggactg ctgacagaaa gctatttatg atttagcttc tggaatttat aattttgcct
      721 gttctctgtg gaaccatcat acggacacat tcctacagca ggtttcttct ggcaatgagg
      781 ctgcagttct gagttcacta gagcgaacac tgctgtcgtt aaaagtgctg cggaagttaa
      841 ctgtgaatgg atttgtggaa cctcataaga atatggaggt gatgggtttt ttgcatggaa
      901 tatttgaacg tctaaaacag tttctggagt gcagcaggag tataggtaca gataatgtgt
      961 gtcgagacag actggagaag accatcatcc ttttcactaa agtggtgact cttggacttc
     1021 ttgatcagcc acccatttca tttactcctc tgattcagag gtcactggaa ttctctgtaa
     1081 gctatgtttt tactgaagtc ggtgaaggcg ttacatttga gcggttcatt gtccagtgca
     1141 tgaatcttat taaaatgatt gtcaaaaatt atgcttataa gccatccaaa ttttttccag
     1201 atagcagccc tgaaacactt gaagcccata agattaagat ggcattcttc acatatccca
     1261 cattgacaga gatatgtcga cgattagtct ctcattactt tttattaact gaagaagaac
     1321 tgactatgtg ggaggaagat ccagaaggct ttacagtgga agaaacggga ggagactctt
     1381 ggaaatacag tttgaggcct tgcactgaag tattatttat agatatattc cacgaatata
     1441 atcaaactct tactcctgta cttctagaaa tgatgcaaac gcttcaaggt ccaaccaatg
     1501 tagaagatat gaatgcactg ttaatcaaag atgctgtgta taatgctgtg ggattagctg
     1561 cttttgagct gtttgacagt gttgattttg atcagtggtt taaaacccaa cttcttccag
     1621 aattacaagt ttctcataat aggtataagc cattacgacg cagggtgatt tggctcattg
     1681 gtcagtggat ttctgtgaaa ttcaagtctg acttgagacc caggctgtat gaagcaatct
     1741 gtaacttgct tcaagatcag gatttggtgg tccgaattga aacagcaaca actctgaagt
     1801 taactgttga tgattttgaa tttaggacag atcaattttt accgtatctg gaaaccatgt
     1861 tcacactgct ttttcagttg ctgcagcaag ttacagaatg tgatacaaag atgcatgttt
     1921 tgcatgtcct ttcctgtgtg attgaaagag tcaacataca gatacggccg tatgtagggt
     1981 gtttggtgca gtatttgcct cttctctgga agcagagtga ggaacacaac atgttacgat
     2041 gcgctattct gacaacactt atccatcttg ttcagggatt aggagcagac agcaagaact
     2101 tgtatccttt cctgctccca gttatccagc tgagtaccga tgtttcccag cctccacatg
     2161 tctaccttct ggaagatggt ctggaattat ggttagtgac attggagaac agcccatgtg
     2221 tcacaccaga actgcttcgt atatttcaga acatgtcacc tcttcttgag cttccatcca
     2281 gctgccttgc aaacgaatta agctcagaga atctcagaac ctgctttaag atcatcaatg
     2341 gctatatctt tttatcatca acggaatttt tacagacata tgcagcaggt ttgtgccagt
     2401 ccttttatga gctgctaccg gagattacta cagaaggtca agttcaagtg ctcaaggttg
     2461 tggaaaatac ccttaaagtg aatccagtat tgggcccaca gatgtttcaa cgaattctac
     2521 cctatgtttt cagaggtgtt attgaaggcg agaggtatcc agtagtgatg tccatctatc
     2581 ttgctgttat gggtcgagtc ttactacaga atgccagttt cttttcttca cttctcaatg
     2641 agatgggaca tgagtttaat caggagatgg atcagctttt aggaaatgtg attgaaatgt
     2701 gggttgatcg aatggacaac atcacacagc ccgagagaaa gaaactttca gctttggctt
     2761 tactttctct tctgccttct gacaatagtg ttatccaaga taaattttgt ggaattataa
     2821 atatctcagt ggaggccctt catgatgtca tgacagaaga ccctgaaaca agaacttaca
     2881 aagattgtat gctgatgtct catcatgagg aaccgaaggt aacagaagac gaagaaccac
     2941 ccacagaaca agacaagagg aaaaagatgc tggccctgaa ggaccctgtg cacacagtgt
     3001 ctctgcagca gttcatctat gagaagctca aagcacagca ggagatcctg ggggagcaag
     3061 gcttccagtc cctcatggag acggtggaca cagagattgt cacccagctg caggagtttt
     3121 tgcagggatt ctaaggcgtg ctaagtggcc gccgtccctc tgagagaggc cgaatacccc
     3181 aacctgccat ccggatgtga gcctgctgag gaggtcattt gtgtatgaat ataaagaaac
     3241 caagaccata catttttact ataaaatata aagaataagt ataaatccca aatattaaag
     3301 tcagaaaact attcctcaaa agaatttaat tttatattta tgagggggcc ctgtgtttac
     3361 tagaggtgca tttatcgaga gtagctgcat tgcctcttgt taagaacctc gttgattaca
     3421 ttttaatcat gggctcttaa cactcgagaa gatgaaggct gatgttccag atgttttcag
     3481 caacccgaat tacttatatt tggttgcctt atcctaattt ttttaagcta atgaaacaag
     3541 tttgagaaat gagaatgctg tgtaaatgac agaattaaat ttgtgcatag gcaaacatca
     3601 tgacagctgc ccactacctg ggtatctcac cagggagctg ttttcatcaa atcaaatgct
     3661 tttattttca ttctagtagt ctgacatagg aattggtaaa ggcactttta actttacttt
     3721 gagtgcatac attgcaaggc acatggaagt gaacctgcag tactgtagtg ccaagtggga
     3781 gaccactggt gaggctctag ccctggcttc tttgctacat gtgaaggcca gtagccctgg
     3841 gagcaccagg aagaaccaga taactccaag tcccctccgc tgtgacagtc atgcttggct
     3901 gtgacaagct gcccagtatt tacccatctc aggttcctca gtgcaggggt gcgtcagcac
     3961 ttcagtgcca tgggtgcacc tcagaggacc caacagcaac ccccagggta ctagcactga
     4021 cataactagt cttccttcct attcctccat tgcactaagc atgcgagggg gagaactgac
     4081 gccttacttt gcattacttg ccattgtgag gaacctttag agcatctctt aggaaatact
     4141 caaaagcaag attggaaatg tcttatcttt ctatagaaat ttgggtacag tgtataactg
     4201 tgggaaaacc actacccctc tgtaagctat ggaacccata atgtctacgg atatatgatg
     4261 ttttcagcaa agaaagaaaa tatggtccaa ttaaattttc caaagatacc tca
//
